mRNA_Ecto-sp13_S_contig7795.19044.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7795.19044.1
Unique NamemRNA_Ecto-sp13_S_contig7795.19044.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7795.19044.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 1160 bits (3000), Expect = 0.000e+0
Identity = 598/688 (86.92%), Postives = 631/688 (91.72%), Query Frame = 3
Query:  168 GASTNTKSAQAMADLCVQKPSPLSRSFDNELFRALNWVKRHVIESCSPLTLGETEGVKTNVLLSARGFPPSRIRKQEVKRMVVECYAATAARFKKEIATEVAGVPCLHLSLELWVDKSSSLKYMGVRLFYVNSAWHLKSYLLAVRQFNPSPGTLKNERLSELLEKYVFAVLEEFGVDASLLFSATNDAPGDVKRLCSVLLPGLREWCVCHMLNDSLAEAIGNCVDPQKPGDRAARNVVVTVKKAVERVRKSPAGKDIFTEEQLLHFSQCSNRKVVNAAPQRWSGVTSILEAIVTNRAAINEVYAEEGKDNPLSPHVHEIDELYSLI*PVAEVIATCQQTHVPTGQAAVLGLAALKLSTLNADAPLDILASASKPTQDATEAAGGEQRTTARAHNDLTRVGREDRERLASALNWRDFDKRYKSTVSESTDLVSDMQMGLHPCTADLQYVSRLAPTEGHAAAVKKSITDKIIGLAVELADKEAEGKGNEMEHGGPVAKQAPQASAPGDTYPMFASAQYQKEATTTAIMAGLGLIATKDVETSASSIERARAELETLRSAKEDALFGDTSCEGVYSWWERKGHSYPLLARAARVVFAAPASVMVQERELSSAGLMMTSSRSTSDAEYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTDGDEREG 2231
            GASTN  SAQAMADLCVQKPSP +R FDNEL RAL WV+RHVIE CSPLTLGETEGVKT+VLLSAR F PSRIRKQEVKRMVVECYAATAA+FK+E+ATEVAGVPCLHLSLELWVDKSSSLKYMGVR FYVNS W LKSYLLAVRQFNP+P TLKNERLSELLEKYVFAVLEEFG+DASLLFSAT+DA GDVKRLCSVLLPGLREWCVCHML+DSLAEA+G CV PQ+PG RAARNVV+ VKKAVERVRKSPA KDIFTEEQ++ FSQCSNRKVVNAAPQRWSGVT  LEA VTNRAAIN VYAEEG+D+PLSPHVHEIDELYSLI PVAEVIATCQQTH PTGQAAVLGLAALKLSTLNADAPLDIL  ASKPTQ ATE AGGEQRTTARAH DLTRVGRE RE LASAL+WRDFDKRYKSTV++ST LV DMQMGLHPCTADLQYVSRLAPTEGHAA VKK+ITDKII LA +LADK+AE KG E E G P AK+APQASAPG+TYPMFASA+Y KEATTTAIMAGLGLIAT+D  TSAS IERARAELETLRSA +DALFGDTSCEGV +WW+RK HSYPLLAR ARVVFAAPASVMVQER+L SAG MMTSSRST DA+YVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLT+ DE EG
Sbjct:   79 GASTNVISAQAMADLCVQKPSPFTRFFDNELSRALEWVQRHVIECCSPLTLGETEGVKTSVLLSARSFAPSRIRKQEVKRMVVECYAATAAQFKEEMATEVAGVPCLHLSLELWVDKSSSLKYMGVRFFYVNSVWQLKSYLLAVRQFNPTPETLKNERLSELLEKYVFAVLEEFGIDASLLFSATSDAGGDVKRLCSVLLPGLREWCVCHMLSDSLAEAVGTCVGPQQPGGRAARNVVMAVKKAVERVRKSPASKDIFTEEQVIQFSQCSNRKVVNAAPQRWSGVTGALEATVTNRAAINGVYAEEGEDSPLSPHVHEIDELYSLIQPVAEVIATCQQTHFPTGQAAVLGLAALKLSTLNADAPLDILTPASKPTQGATEGAGGEQRTTARAHKDLTRVGREAREHLASALHWRDFDKRYKSTVAKSTGLVFDMQMGLHPCTADLQYVSRLAPTEGHAAVVKKNITDKIIALAAKLADKKAERKGIEAEQGEPAAKRAPQASAPGNTYPMFASARYHKEATTTAIMAGLGLIATRDEGTSASPIERARAELETLRSASDDALFGDTSCEGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTNDDESEG 766          
BLAST of mRNA_Ecto-sp13_S_contig7795.19044.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 691 bits (1784), Expect = 1.300e-237
Identity = 399/675 (59.11%), Postives = 469/675 (69.48%), Query Frame = 3
Query:  270 LNWVKRHVIESCSPLTLGETEGVKTNV-LLSARGFPPSRIRKQEVKRMVVECYAATAARFKKEIATEVAGVPCLHLSLELWVDKSSSLKYMGVRLFYVNSAWHLKSYLLAVRQFNPSPGTLKNERLSELLEKYVFAVLEEFGVDASLLFSATNDAPGDVK-RLCSVLLPGLREWCVCHMLNDSLAEAIGNCVDPQKPGDRAARNVVVTVKKAVERVR--KSPAGKDIFTEEQLLHFSQCSNRKVVNAAPQRWSGVTSILEAIVTNRAAINEVYAEEGKDNPLSPHVHEIDELYSLI*PVAEVIATCQQTHVPTGQAAVLGLAALKLSTLNADAPLDILASASKPTQDATEAAGGEQR---TTARAHNDLTRVGREDRERLASALNWRDFDKRYKSTVSE-STDLVSDMQMGLHPCTADLQYVSRLAPTEGHAAAVKKSITDKIIGLAVELADKEAEGKGNEMEHGGPVAKQAPQASAPGDTYPMFASAQYQKEATTTAIMAGLGLIATKDVETSASSIER----ARAELETLRSAKEDALFGDTSCEGVYSWWERKGHSYPLLARAARVVFAAPASVMVQERELSSAGLMMTSSRSTSDAEYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLT---------DGDEREG 2231
            +NWVK HVIE   PL+ GE   V+ ++  ++A+GFP  R+ K+ V +MVVE YAAT A+F+ EI  EV GVP LHL L+LWVDKSS+L +MGVRLFY++  W LKS LLAVRQFNP+    +NERLS +LEKY+  VLEEFG+D S+LFSAT+DA  DVK RLC  L+P L + CVCHMLN SL EAIG  VD +KPG+ AAR VV+ VKK VE +R  KSP  K IF EEQ+ H+SQC +RK+VN APQRWSGV+ +LEA + NR  I+ VYA EG  NPL+PH +EIDELYSLI PVAE+I TCQQTHVPTGQAAVLGLA LKLST N DA LD+L       Q   E  GG +R   +  R HN LT+VGR+ RE LASAL+ R FD+ YKS  SE +TD V DMQMGLHP TADLQYV +L  TE HAA VKKSITDKII LAVELA+KE E K    E    VAK+A  A+APG      A A+ +K+   TA  A LGL   +     AS        ARAELETLR  +   L  D SCEGV  WW++ G  YPLLARAARVVF APAS  V ER+ + A  MM SSRS  DA+YVEMVLFLHGN+DL+PE IPEL  + V   Q KIPGRLSNP+ ELH LDG  G VDLT         +G+E EG
Sbjct:    1 MNWVKWHVIEGFCPLSYGEKRWVRESLNQIAAKGFPLGRLHKEAVAKMVVEYYAATTAQFQAEITAEVGGVPRLHLDLDLWVDKSSTLMFMGVRLFYIDREWRLKSRLLAVRQFNPTLEMFENERLSAVLEKYLTDVLEEFGLDVSMLFSATSDAGSDVKHRLCHTLIPRLWKSCVCHMLNCSLVEAIGTRVDSRKPGNPAARKVVLAVKKVVEHIRRSKSPGAKAIFQEEQVRHYSQCLHRKLVNVAPQRWSGVSGVLEATIVNRVGIDGVYAREGSVNPLAPHENEIDELYSLIKPVAELIVTCQQTHVPTGQAAVLGLATLKLSTFNVDARLDVLTPVRA--QGWPEGTGGGERKATSVPRLHNHLTQVGRDAREHLASALDRRYFDRCYKSADSEKTTDFVFDMQMGLHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIALAVELAEKEMERKQAGPEQDESVAKRARPAAAPGSLQTAVAKARNKKDDAATAKFASLGLFKKRRGGGEASQQPTFEPMARAELETLRGVEAGTLTDDLSCEGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKIPGRLSNPIPELHGLDGTLGLVDLTNDEGGVGPGEGEESEG 670          
BLAST of mRNA_Ecto-sp13_S_contig7795.19044.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 568 bits (1463), Expect = 1.380e-188
Identity = 330/662 (49.85%), Postives = 423/662 (63.90%), Query Frame = 3
Query:  249 DNELFRALNWVKRHVIESCSPLTLGETEGVKTNVLLSA-RGFPPSRIRKQEVKRMVVECYAATAARFKKEIATEVAGVPCLHLSLELWVDKSSSLKYMGVRLFYVNSAWHLKSYLLAVRQFNPSPGTLKNERLSELLEKYVFAVLEEFGVDASLLFSATNDAPGDVKRLCSVLLPGLREWCVCHMLNDSLAEAIGNCVDPQKPGDRAARNVVVTVKKAVERVRKSPAGKDIFTEEQLLHFSQCSNRKVVNAAPQRWSGVTSILEAIVTNRAAINEVYAEEGKDNPLSPHVHEIDELYSLI*PVAEVIATCQQTHVPTGQAAVLGLAALKLSTLNADAPLDILASASKPTQDATEAAGGEQR---TTARAHNDLTRVGREDRERLASALNWRDFDKRYKSTVSESTDLVSDMQMGLHPCTADLQYVSRLAPTEGHAAAVKKSITDKIIGLAVELADKEAEGKGNEMEHGGPVAKQAPQASAPGDTYPMFASAQYQKEATTTAIMAGLGLIAT---KDVETSASSIERARAELETLRSAKEDALFGDTSCEGVYSWWERKGHSYPLLARAARVVFAAPASVMVQERELSSAGLMMTSSRSTSDAEYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTD 2213
            D+  F A+NWVK ++IE   PL+ GE E V+ ++ L+A + FP + I  + VK+M+                    G+  LH +L+LWVDK SSLKY+G+RLFY +  W L+S L+AVRQFNP+   L++ RLS LL+KY+ +VLEE+G+D SLLFSAT+DA  DVKRLC VLLPGL EWCVCHM+N +L EA G  VDP K G+  AR V+ TVKK VE +RKSP  K IF EEQ+  ++QC +RK+VNAAPQRWSGVT++LEA++ NRAAI+ VY  EGKD+PL+    EIDELYS+I P A+VI  CQQT VPTGQ AVL LAALKL TLN D+PL+IL  A K  Q  T   GG +R   +T R H+  T V +  R+ +  +++W  FDKRYKS  S+ TD VS  +    PCT          P    AA     ++    G A   AD+             P AK+A QA+APG  +P+F +   ++E  TT + A LGL      +  E   S  + ARAEL  LR+ +  +L    SCE V  WW+   H+YPLLAR ARVVF APAS  V ER+ S+AG MMTSSRST D++YVEM++FLHGN+DL+PE I +L        +TKIPGRL+NP+  L  LDG F PVDLTD
Sbjct:  103 DHARFLAMNWVKCNIIEGFCPLSHGEKEWVRASLKLTALKNFPITGIHNKAVKQMI-------------------GGMRLLHHNLDLWVDKFSSLKYIGIRLFYADRTWVLRSRLIAVRQFNPTKELLEDNRLSALLQKYLESVLEEYGLDVSLLFSATSDAGSDVKRLCDVLLPGLWEWCVCHMINCALVEAFGTHVDPAKSGNPGARKVITTVKKVVEHIRKSPRAKAIFEEEQVQQYAQCYHRKLVNAAPQRWSGVTNVLEAVIVNRAAIDGVYTAEGKDSPLTSLTEEIDELYSIIKPAAQVIVKCQQTSVPTGQVAVLALAALKLITLNVDSPLEILTPARKLAQAETSGIGGGERPATSTPREHSLSTGVAKGTRQHICESVDWWWFDKRYKSAESQDTDYVSTCRW---PCTR---------PRLTCAALHTGDVSTTPAGSAA--ADE-------------PAAKRARQAAAPGSVHPLFKAPVNKREEATTNMYASLGLFGPGGDEQNEEPPSFEQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAA---RTKIPGRLANPVERLEQLDGVFAPVDLTD 715          
BLAST of mRNA_Ecto-sp13_S_contig7795.19044.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 455 bits (1170), Expect = 5.610e-148
Identity = 265/565 (46.90%), Postives = 338/565 (59.82%), Query Frame = 3
Query:  540 GVRLFYVNSAWHLKSYLLAVRQFNPSPGTLKNERLSELLEKYVFAVLEEFGVDASLLFSATNDAPGDVKRLCSVLLPGLREWCVCHMLNDSLAEAIGNCVDPQKPGDRAARNVVVTVKKAVERVRKSPAGKDIFTEEQLLHFSQCSNRKVVNAAPQRWSGVTSILEAIVTNRAAINEVYAEEGKDNPLSPHVHEIDELYSLI*PVAEVIATCQQTHVPTGQAAVLGLAALKLSTLNADAPLDILASASKPTQDATEAAGGEQRTTARAHNDLTRVGREDRERLASALNWRDFDKRYKSTVSESTDLVSDMQMGLHPCTADLQYVSRLAPTEGHAAAVKKSITDKIIGLAVELADKEAEGKGN-------EMEHGGPVAKQAPQASAPGDTYPMFASAQYQKEATTTAIMAGLGLIATKDVETSASSIERARAELETLRSAKEDALFGDTSCEGVYSWWERKGHSYPLLARAARVVFAAPASVMVQERELSSAGLMMTSSRSTSDAEYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTD 2213
            G+RL+YV+  W L+S L+AVRQFNP+   L++ RLS LL+KY+  VL E+G+D SLLFSAT+DA  DVKRLC VLLPGL EWCVCHM+N ++ +A G  VDP K  +  AR V+ TVK  VE +RKSP  K IF EEQ+  ++QC +RK+VNAAPQRWSGVT++LEA++ NR AI+ VYA EGK +PL+    EIDEL+ +I P A+VI + ++                                                 +T R H+ LT V R  R+ +  +++WR FDKRYKS  S+ TD V DMQM LHP TADL+YV +LA T   A AVK +ITDK+I LAV+LA+  A   G+             P AK+A QA+APG                                E   S  + ARAEL  LR+ +  +L     CE V  WW+   H+YPLLAR ARVV  A AS  V E + S+AG MMTSSRST D++YVEM+LFLHGN+DL+PE I +L  + V   +TKIPGRL+NP+  L  LDG F PVDLTD
Sbjct:    3 GIRLYYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSTLLQKYLERVLAEYGLDVSLLFSATSDAGSDVKRLCDVLLPGLWEWCVCHMMNCAVVKAFGMHVDPAKSRNPGARKVITTVKTIVEHIRKSPRAKAIFEEEQVRQYAQCYHRKLVNAAPQRWSGVTNVLEAVIVNRPAIDGVYAAEGKHSPLTSLTDEIDELHYIIKPAAQVIVSGERPAT----------------------------------------------STPREHSLLTGVARGTRQHMCESVDWRWFDKRYKSAKSQDTDYVFDMQMALHPTTADLRYVDKLASTSAFAGAVKSTITDKVISLAVKLAEAAALHTGDGSTTPAWSAAADKPAAKRARQAAAPGSK------------------------------EEPPSFEQTARAELTKLRAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEAV--ARTKIPGRLANPVEGLEQLDGAFAPVDLTD 488          
BLAST of mRNA_Ecto-sp13_S_contig7795.19044.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 387 bits (994), Expect = 1.900e-122
Identity = 247/477 (51.78%), Postives = 288/477 (60.38%), Query Frame = 3
Query:  822 AIGNCVDPQKPGDRAARNVVVTVKKAVERVRKS--PAGKDIFTEEQLLHFSQCSNRKVVNAAPQRWSGVTSILEAIVTNRAAINEVYAEEGKDNPLSPHVHEIDELYSLI*PVAEVIATCQQTHVPTGQAAVLGLAALKLSTLNADAPLDILASASKPTQDATEAAGGEQRTTARAHNDLTRVGREDRERLASALNWRDFDKRYKSTVS-ESTDLVSDMQMGLHPCTADLQYVSRLAPTEGHAAAVKKSITDKIIGLAVELADKEAEGKGNEMEHGGPVAKQAPQASAPGDTYPMFASAQYQKEATTTAIMAGLGLIATKDVETSASSIER----ARAELETLRSAKEDALFGDTSCEGVYSWWERKGHSYPLLARAARVVFAAPASVMVQERELSSAGLMMTSSRSTSDAEYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTDGDEREG 2231
            AIG  VD +KPG+RAAR +V+ VKK VE +RKS  P  + IF EEQ+ H+SQC +RK+VN APQRWSGV  +LEA + NR  I+ VYA EG  NPL+PH H+IDELYS+I PVAE+I T QQTHVPTGQAA LGLAALKLST N DA LD+L  A    Q   E AGG            T V R                  YK   S ++TD V DMQMGLHP TADLQYV +LA ++ HAA V K ITDKII LAVELA KE E K    E    VAKQA  A+AP  ++P  A A+ + E   TA    L L   + V  +AS        A AE ETLR  +  +L  D  CEGV  WWE+   SYPLLARAARV F APA+                      DA+YVEMVLFLHG +DL PE IPEL  + ++    KIPGRLSNP+ ELH LDG  GPVDLT  +E  G
Sbjct:   13 AIGTRVDSRKPGNRAARKMVLAVKKVVEHIRKSKSPGAQAIFQEEQVRHYSQCLHRKLVNVAPQRWSGVGGVLEATIVNRVDIDGVYAREGSVNPLAPHEHDIDELYSVIKPVAELIVTYQQTHVPTGQAAALGLAALKLSTFNVDARLDVLTPARA--QGRPEGAGG-------VEPKATSVPR-----------------CYKPADSAKTTDFVFDMQMGLHPTTADLQYVDKLASSKVHAAFVTKRITDKIITLAVELATKEMERKQAGPEQHESVAKQARPAAAPKSSHPAVARARNKNEDAATAKFTSLRLFKKRRVGANASQQPTFEPMACAEFETLRGVEAGSLTDDLGCEGVLKWWEKWEGSYPLLARAARVDFGAPAA---------------------GDAKYVEMVLFLHGKLDLFPEQIPELRDEDIHA---KIPGRLSNPVPELHGLDGTLGPVDLTHDEEGVG 439          
BLAST of mRNA_Ecto-sp13_S_contig7795.19044.1 vs. uniprot
Match: A0A6H5KWS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS6_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 1.970e-100
Identity = 162/292 (55.48%), Postives = 219/292 (75.00%), Query Frame = 3
Query:  261 FRALNWVKRHVIESCSPLTLGETEGVKTNVLLSA-RGFPPSRIRKQEVKRMVVECYAATAARFKKEIATEVAGVPCLHLSLELWVDKSSSLKYMGVRLFYVNSAWHLKSYLLAVRQFNPSPGTLKNERLSELLEKYVFAVLEEFGVDASLLFSATNDAPGDVKRLCSVLLPGLREWCVCHMLNDSLAEAIGNCVDPQKPGDRAARNVVVTVKKAVERVRKSPAGKDIFTEEQLLHFSQCSNRKVVNAAPQRWSGVTSILEAIVTNRAAINEVYAEEGKDNPLSPHVHEIDEL 1133
            F A+ WVK ++IE   P++ GE E V+ ++ L+A + FP + I  + VK+MVVE YAATA++FK E+A ++ G+  LHLSL+LWVDK SSLKY+G+ LFYV+  W L+S L+AVRQFNP+   L++ RLS L++K++ +VLEE+G+D SL+FSAT+D+  DVKRLC VLLPGL EWCVCHM+N +L EA G  VD  K  +  AR V+   KK VE + KSP  K IF +EQ+  ++QC +RK+VNAAPQRWSGVT++LEA++ NRAA+N VY  EGKD+PL+   +EIDEL
Sbjct:  162 FLAMKWVKCNMIEGFCPVSHGEKEWVRASLKLTALKNFPITGIHNEAVKQMVVEMYAATASQFKMEMAAQIGGMRLLHLSLDLWVDKFSSLKYVGIPLFYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSALVQKHLESVLEEYGLDVSLVFSATSDSGSDVKRLCDVLLPGLWEWCVCHMINCALVEAFGTHVDSAKSRNPGARKVITMGKKVVEHIPKSPRAKAIFEQEQVRQYAQCYHRKLVNAAPQRWSGVTNVLEAVIVNRAAVNAVYTTEGKDSPLTSLTNEIDEL 453          
BLAST of mRNA_Ecto-sp13_S_contig7795.19044.1 vs. uniprot
Match: A0A6H5KEC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC8_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 6.310e-95
Identity = 158/293 (53.92%), Postives = 215/293 (73.38%), Query Frame = 3
Query:  267 ALNWVKRHVIESCSPLTLGETEGVKTNVLLSA-RGFPPSRIRKQEVKRMVVECYAATAARFKKEIATEVAGVPCLHLSLELWVDKSSSLKYMGVRLFYVNSAWHLKSYLLAVRQFNPSPGTLKNERLSELLEKYVFAVLEEFGVDASLLFSATNDAPGDVKRLCSVLLPGLREWCVCHMLNDSLAEAIGNCVDPQKPGDRAARNVVVTVKKAV---ERVRKSPAGKDIFTEEQLLHFSQCSNRKVVNAAPQRWSGVTSILEAIVTNRAAINEVYAEEGKDNPLSPHVHEIDEL 1133
            A+NWVK ++I+   PL+ GE E V+ ++ L+A + FP + I  + VK+MVVE YAATA++FK E+A ++ G+  LHL+L+LWVDK SSLKY+G+RLFYV+  W L+S L+AVRQFNP+   L++ RLS LL+KY+ +VLEE+G+D SLLFSAT+DA  DVKRLC VLLPGL EWCVCHM+N +L EA G  V+P K  +          +K      ++ +S  G  IF +EQ+  ++QC +RK+VNAAPQRWSGVT++LEA++ NRAA+N VY  EGKD+PL+   +EIDEL
Sbjct:   11 AMNWVKCNIIQGFCPLSHGEKEWVRASLQLTALKNFPITGIHNKAVKQMVVEMYAATASQFKMEMAAQIGGMRLLHLNLDLWVDKFSSLKYIGIRLFYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSALLQKYLESVLEEYGLDVSLLFSATSDAGSDVKRLCDVLLPGLWEWCVCHMINCALVEAFGTHVNPAKSINPRCTQSDHDGEKGCGVHPQISQSEVGA-IFEQEQVRQYAQCYHRKLVNAAPQRWSGVTNVLEAVIVNRAAVNAVYTTEGKDSPLTSLTNEIDEL 302          
BLAST of mRNA_Ecto-sp13_S_contig7795.19044.1 vs. uniprot
Match: A0A6H5JM59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM59_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 2.100e-78
Identity = 157/350 (44.86%), Postives = 211/350 (60.29%), Query Frame = 3
Query:  270 LNWVKRHVIESCSPLTLGETEGVKTNVLLSARGFPPSRIRKQEVKRMVVECYAATAARFKKEIATEVAGVPCLHLSLELWVDKSSSLKYMGVRLFYVNSAWHLKSYLLAVRQFNPSPGTLKNERLSELLEKYVFAVLEEFGVDASLLFSATNDAPGDVKRLCSVLLPGLREWCVCHMLNDSLAEAIGNCVDPQKPGDRAARNVVVTVKKAVERVRKSPAGKDIFTEEQLLHFSQCSNRKVVNAAPQRWSGVTSILEAIVTNRAAINEVYAEEGKDNPLSPHVHEIDELYSLI*PVAEVIATCQQTHVPTGQAAVLGLAALKLSTLNADAPLDILASASKPTQDATEAAGG 1319
            +NWVK ++IE   PL+ G  E V+ ++ L+A       +  + VK++VV+ YAATA+++K E+A ++ G+  LHL+ +LWVDK SSLK +G+RLFY++  W L+S L+AVRQFNP+   L++ RL  LL+KY+ +VLEE+G+D SLLFSAT+DA  D                           A G  VDP K      R V+ TVK  +E +RKSP  K                   V+ A     GVT++LEA++ NRAAI+ VY  EGKD+PL+    EIDEL+S+I P A+VI  CQQT VPT Q AVL LAALKL+TLN D+PL+IL  A K  Q  T   GG
Sbjct:    1 MNWVKCNIIEGFCPLSHGGKEWVRASLKLTA-------LNNKAVKQVVVDMYAATASQYKMEMAAQIGGMRLLHLNRDLWVDKFSSLKCIGIRLFYIDRTWVLRSRLIAVRQFNPTKELLEDNRLLALLQKYLESVLEEYGLDVSLLFSATSDAGSD---------------------------AFGTHVDPAKSRSPVVRKVIATVKMVMEHIRKSPRAK-------------------VSFAVVIGCGVTNVLEAVIVNRAAIDGVYTTEGKDSPLTSLTDEIDELFSIIKPAAQVIVKCQQTSVPTVQLAVLALAALKLTTLNVDSPLEILTPARKLAQAGTSGIGG 297          
BLAST of mRNA_Ecto-sp13_S_contig7795.19044.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.080e-56
Identity = 130/279 (46.59%), Postives = 158/279 (56.63%), Query Frame = 3
Query: 1386 LASALNWRDFDKRYKSTVSESTDLVSDMQMGLHPCTADLQYVSRLAPTEGHAAAVKKSITDKIIGLAVELADKEAEGKGNEMEHGGPVAKQAPQASAPGDTYPMFASAQYQKEATTTAIMAGLGLIATK---DVETSASSIERARAELETLRSAKEDALFGDTSCEGVYSWWERKGHSYPLLARAARVVFAAPASVMVQERELSSAGLMMTSSRSTSDAEYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTD 2213
            +  +++WR FDKRYKS  S+ TD V DMQM LHP TA L+YV +LA T   A AVK +ITDK+I L V LA+  A   G+                  G T P         E  TT + A LGL         E   S  + ARAEL  LR+ +   L     CE V  WW+   H+YPLLAR ARVVF APAS  V E   S+AG M TSSRST D+ YVEM++FLHGN++L+PE I +L        +TK PGRL+NP+  L  LDG F PVDLTD
Sbjct:    1 MCESVDWRRFDKRYKSAESQDTDYVFDMQMALHPTTAGLRYVEKLASTSAFAGAVKSTITDKVIFLTVRLAEAAALHTGD------------------GSTTPAG-------EEATTNMHASLGLFGPGVDGQNEEPQSFKQTARAELTKLRAVQGGRLAARLRCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKLTEVVA---RTKFPGRLANPVDGLEPLDGAFAPVDLTD 251          
BLAST of mRNA_Ecto-sp13_S_contig7795.19044.1 vs. uniprot
Match: A0A6H5KHW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW5_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.180e-53
Identity = 104/186 (55.91%), Postives = 134/186 (72.04%), Query Frame = 3
Query:  225 PSPLSRSFDNELFRALNWVKRHVIESCSPLTLGETEGVKTNV-LLSARGFPPSRIRKQEVKRMVVECYAATAARFKKEIATEVAGVPCLHLSLELWVDKSSSLKYMGVRLFYVNSAWHLKSYLLAVRQFNPSPGTLKNERLSELLEKYVFAVLEEFGVDASLLFSATNDAPGDVK-RLCSVLLPGL 776
            PS +S     ++   + W   HVIE C PL+ GE   V+ ++  ++A+GFP  R+ K+ V +MVVE YAAT A+FK EIA EV GVP LHL LELWVDKSS+L +MGVRLFY++  W L+S LLAVRQFNP+P   +NERLS+LLEK++  VLE FG+D  +LFSAT+DA  DVK RLC +L+P L
Sbjct:    2 PSKISSKVGQDVNPKVKW---HVIEGCCPLSYGEKRRVRESLNQIAAKGFPLDRLHKETVAKMVVEYYAATTAQFKAEIAAEVGGVPRLHLDLELWVDKSSTLMFMGVRLFYIDREWRLRSRLLAVRQFNPTPEMFENERLSKLLEKHLTDVLE-FGLDVYMLFSATSDAGSDVKHRLCYILIPRL 183          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7795.19044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFP4_ECTSI0.000e+086.92Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI1.300e-23759.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE1.380e-18849.85Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE5.610e-14846.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEK6_9PHAE1.900e-12251.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWS6_9PHAE1.970e-10055.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEC8_9PHAE6.310e-9553.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM59_9PHAE2.100e-7844.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JML0_9PHAE1.080e-5646.59Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KHW5_9PHAE1.180e-5355.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7795contigEcto-sp13_S_contig7795:807..5210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score136.0
Seed ortholog evalue3.3e-29
Seed eggNOG ortholog2880.D7G3L2
Model size2672
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2CZK4@1,2SARG@2759
Cds size987
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7795.19044.1prot_Ecto-sp13_S_contig7795.19044.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7795 1193..3686 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464049.6588612-UTR-Ecto-sp13_S_contig7795:806..9161681464049.6588612-UTR-Ecto-sp13_S_contig7795:806..916Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7795 807..916 +
1681464049.669023-UTR-Ecto-sp13_S_contig7795:1141..11921681464049.669023-UTR-Ecto-sp13_S_contig7795:1141..1192Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7795 1142..1192 +
1681464049.7401228-UTR-Ecto-sp13_S_contig7795:3686..52101681464049.7401228-UTR-Ecto-sp13_S_contig7795:3686..5210Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7795 3687..5210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464049.6810188-CDS-Ecto-sp13_S_contig7795:1192..11991681464049.6810188-CDS-Ecto-sp13_S_contig7795:1192..1199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7795 1193..1199 +
1681464049.6905892-CDS-Ecto-sp13_S_contig7795:1679..20511681464049.6905892-CDS-Ecto-sp13_S_contig7795:1679..2051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7795 1680..2051 +
1681464049.702956-CDS-Ecto-sp13_S_contig7795:2304..25851681464049.702956-CDS-Ecto-sp13_S_contig7795:2304..2585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7795 2305..2585 +
1681464049.715611-CDS-Ecto-sp13_S_contig7795:3106..32171681464049.715611-CDS-Ecto-sp13_S_contig7795:3106..3217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7795 3107..3217 +
1681464049.7267826-CDS-Ecto-sp13_S_contig7795:3470..36861681464049.7267826-CDS-Ecto-sp13_S_contig7795:3470..3686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7795 3471..3686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7795.19044.1

>prot_Ecto-sp13_S_contig7795.19044.1 ID=prot_Ecto-sp13_S_contig7795.19044.1|Name=mRNA_Ecto-sp13_S_contig7795.19044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=329bp
MTGASTNTKSAQAMADLCVQKPSPLSRSFDNELFRALNWVKRHVIESCSP
LTLGETEGVKTNVLLSARGFPPSRIRKQEVKRMVVECYAATAARFKKEIA
TEVAGVPCLHLSLELWVDKSSSLKYMGVRLFYVNSAWHLKSYLLAVRQFN
PSPGTLKNERLSELLEKYVFAVLEEFGVDASLLFSATNDAPGDVKRLCSV
LLPGLREWCVCHMLNDSLAEAIGNCVDPQKPGDRAARNVVVTVKKAVERV
RKSPAGKDIFTEEQLLHFSQCSNRKVVNAAPQRWSGVTSILEAIVTNRAA
INEVYAEEGKDNPLSPHVHEIDELYSLI*
back to top

mRNA from alignment at Ecto-sp13_S_contig7795:807..5210+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7795.19044.1 ID=mRNA_Ecto-sp13_S_contig7795.19044.1|Name=mRNA_Ecto-sp13_S_contig7795.19044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4404bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7795:807..5210+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTGGCAGTACGGTGTTCAGGGCCAGAAGCAAGAACGGTGTGTTTGTCG GCATCTCCAAGCACACAGGGTCGAACGCCCGGGACCACGTGAAGCACAAG CACGGCGCAGGTGAGCAGTGCAATACCAGAGCAAATTGAAAATGCAACAG GTCCTTTGAGGCAGTTGGGTTTTGTTCATGGATGTTTGCTATAGAATTGC TACGGTCATCAGGGAGTAGGGGATTTGATTGAGATATGATAGCGAACCTT AGCTTACGTGTAAGGCGCTATTACAGCAGCATGCAACAGCAAGCAGACGA GAGTAAGCCTGCATGTCCGCCGTTCGAAACCACAGAAGCCTCTCCCTGGT GCCCAGCGTCGAACCTCTGTGTGTATCCTGGTTCGGATGACGGGTGAGTT TTGCGGTGAAAAACTTCTCGCCGTCTTTCCTCTCGCATACTTACATACAC GTTCCTACAGCGTCGGGTACTTCCTTCCCCTGCTCCCGTTTTTTCTTGTC AACAGAGACTCCACCCCTGTCAAGATTGCCGATATCGAATGTAAGCTACT TAAGAATTATATTCTTTTACCTTGTGTTTAGTAGGTTTTCCCTCAAGTGT TTGTCAGACCACAAGCCTAGTACCGGAAGCATGTGCTTGTTACTTTTGTG TCGAATTACTTATTTCGTTTTTGCTTCTGTTTGTTGTTGGCAAGACATGC ACGCAGACGGTGTGGGTGGCGATCGTTTTTCGTGCCAAAATGTGTGCTAC TGTGTAGAGTTAATGGTGTCTTTTATCAACAACCAAAACCATCGATACTG AAGTACCCCCCGCCTTACAATGTTTTGAAACTCAGATTTCATGCCTCTCG TCACAACCCGAAACGGTTCGCAGGGGCCTCTACGAACACGAAATCCGCTC AGGCGATGGCAGATCTGTGTGTGCAAAAGCCCAGCCCGCTCAGCAGAAGT TTCGACAACGAGCTGTTTCGGGCGTTGAATTGGGTCAAGCGGCACGTGAT TGAGAGTTGCTCGCCTCTAACCCTCGGCGAGACCGAAGGGGTGAAGACAA ACGTGCTGTTGTCCGCTCGGGGCTTCCCTCCCAGCCGCATCCGCAAGCAA GAGGTGAAGAGGATGGTGGTCGAGTGCTATGCCGCTACCGCTGCCCGATT CAAGAAGGAGATAGCCACTGAGGTGGCGGGCGTGCCGTGTCTGCACCTCA GCCTCGAACTGTGGGTTGACAAGTCATCGAGCTTAAAATACATGGGTGAG CAGCAGAGGGTGACCGATATCGCTGAGGCGGTCTATCGAACCCTAGCGTG TGTCACGATAGCTGAGGTAGCGATGCCCCTGCCCGTTTGGTCTTGTCGCT GTTTTCAAGCGTTGATACGAAAGGAACACATTGTAGACACGTGTGTCCGC CGAGCTGTAATTAAGTGACCGGTGTTCCAGATGACGCCCTTCACTCTCAT TGAACTAATGAGCAACGTTTGAATGTCTTCGCTTTTCATCGATTGCAGGT GTTCGGCTGTTCTACGTCAACTCTGCTTGGCATCTGAAGTCATACCTCCT CGCCGTTCGGCAGTTCAACCCTTCGCCGGGGACGCTCAAGAATGAGCGTC TCTCTGAGCTCCTCGAGAAGTACGTCTTCGCCGTGCTGGAGGAGTTCGGC GTCGACGCGTCGCTGCTGTTCTCAGCGACAAACGATGCCCCCGGCGACGT CAAGCGCCTGTGCAGTGTGCTGCTCCCGGGGCTACGGGAGTGGTGCGTGT GCCACATGCTCAATGATTCTCTGGCTGAGGTGCGTGTCTTTGAGGCTGCG CACAACAACAGCTCTCTTGCTTGAGCAGGAAATGTTTGTACTCCTCCGAG TTGTTGATGAGCAAAGTGAGTTGCGTGTCTTGTACTAGTGCAACCAATGA TGGTCGTGCGGCAAAACGGCTTGTGTTTCGCGGAGAGATTGCCGCCGTTC GTAACCGTTCCATAATCCTCCATGCTTTTGCGTTGCTGTTTCTCTTCGAG GACGAAAAGCGTTTTTCCCTCGCGAAGACTGGCCCAGGGTTTGGGTGGGG GTTCTCATTTCCCCAGGGTTAACACATGGTGAAAGAAACACTCCCTCCCG TAAGGGGACGTTTCCCGTCACGGCATCTTCTCTTTTTCATGACGCCCCAC TGCTAGAGTTTGCTCTTGGGCATACTTTTGCATCGTGTTGGACGACCAGC CCACACGGCCAAGTCAGACCCAAACTTGCGCACTTGACATGGTTGTTCAA ATATATTGTTTCTACATGTTTTGTGTCGCCTTTGCACATTGAAACCGCAG GCCATCGGTAACTGCGTGGACCCACAAAAGCCGGGCGATCGTGCCGCACG CAACGTGGTCGTGACGGTGAAGAAAGCCGTGGAGCGCGTTCGCAAGTCTC CTGCTGGAAAGGTGAATGTAACGTTCATGATTCTTTTCTCCCTGTTCGTC TGATTGTGTCTTGGAGTATATCACAGGGTGAAGTACACCAGAAAAAGCGA GGGGTAGAGACTCCTCTATAGCGCCTCCTGTGATGGGAGGTCATGGCATC TTTGCCTGGTTGGGTACGTATGTGCGTTGCATTGAGTTGTCGTTTGCATG TTGCATGTTACGTCCGTTACGGATCAACACCCCACCGCCTCCCCCCCACA CGCACTCAAAACAGGATATCTTTACGGAGGAGCAACTTCTTCACTTCTCG CAGTGCTCAAACCGCAAGGTGGTCAACGCGGCACCACAGCGGTGGTCTGG TGTGACCAGCATCCTCGAGGCAATCGTCACCAACCGTGCTGCCATCAACG AGGTGTATGCCGAGGAAGGGAAGGACAACCCGCTGTCGCCGCATGTGCAC GAGATCGACGAGCTGTATTCCCTCATTTAGCCGGTTGCGGAGGTCATCGC TACGTGCCAGCAAACCCATGTCCCCACCGGGCAAGCTGCTGTGCTCGGCC TGGCGGCACTCAAGCTCAGCACCTTGAACGCCGACGCCCCGCTCGACATC CTGGCCTCGGCGAGCAAGCCGACACAGGATGCGACGGAGGCCGCTGGCGG CGAGCAACGAACGACCGCGAGGGCGCACAATGATCTGACTCGAGTGGGTC GCGAGGATCGCGAACGCCTCGCTTCGGCCTTGAACTGGCGGGACTTCGAC AAGCGTTATAAGTCAACCGTGTCCGAGAGCACGGACTTGGTGTCCGACAT GCAGATGGGGCTGCACCCGTGCACGGCCGACCTCCAGTACGTTAGCAGGC TCGCCCCGACGGAAGGGCATGCCGCGGCCGTCAAGAAGAGCATCACCGAC AAGATCATTGGCTTGGCTGTGGAGCTGGCGGACAAGGAGGCAGAAGGCAA GGGGAATGAAATGGAGCATGGCGGGCCGGTCGCGAAGCAGGCGCCCCAGG CGTCTGCTCCCGGCGACACGTACCCGATGTTTGCCAGCGCCCAATACCAG AAGGAGGCGACGACCACTGCGATTATGGCGGGCCTCGGACTCATCGCGAC CAAGGATGTGGAGACGAGCGCGTCGTCTATAGAGCGCGCTCGCGCCGAGC TCGAGACGCTGAGAAGCGCAAAGGAGGATGCACTGTTCGGCGACACGAGC TGCGAGGGCGTGTACAGCTGGTGGGAGAGAAAGGGGCACTCGTACCCACT CCTGGCTAGGGCAGCGCGCGTCGTCTTCGCCGCCCCCGCGTCGGTGATGG TGCAGGAGCGCGAACTAAGTTCCGCTGGGCTCATGATGACGTCATCGAGG AGCACCAGTGACGCCGAGTACGTGGAGATGGTCCTCTTTCTGCACGGTAA CGTGGACCTCCTTCCGGAGATCATCCCGGAGCTGCCAGCCGACGGAGTTA ACGGAGTCCAAACCAAGATTCCCGGGCGGTTGTCCAACCCCATGCTGGAG CTGCATGCGCTTGATGGCGAGTTCGGCCCAGTGGACCTTACCGACGGCGA CGAAAGAGAGGGATAAAGGCGGCGCGGCGAGACGCCGTTGACCGGGCTTT TCATGTGCATGTTTACGCACCCGTTTCTGATAAAGGGGGTGCAGGTTGAT AAGTGCGTTGTGTCAAACGAGGAACTGGGTTCCCAACGAGGAAATGACAT TGATTTTCAAAATGGGTGGCAGACAGCGGAAGGTACAGCCTGTACTGGGT GCTAGCGCGGTGTTGGTTGCGAGAGGGTACTCTGTGGCGCCTTTGTCTAC GCTCGTGATGGTGCTCATGAATTGAGAGCAGACGATAGGCCGGCAGGGCA TGAGGGTGTGGCGGGTTTCTCTCTGTGTTTGAGGAGAACGTGTGTATTTG TGTTTTGTGTAGAGATCAGAGGTCGTGTGTATGCTTGGGCTTCCGCAATC CGTGTTTTCAAGCACAATCCACTACCTGACCGTTAAAATAACCTTTCCTA CGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7795:807..5210+

>mRNA_Ecto-sp13_S_contig7795.19044.1 ID=mRNA_Ecto-sp13_S_contig7795.19044.1|Name=mRNA_Ecto-sp13_S_contig7795.19044.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7795:807..5210+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGGGGCCTCTACGAACACGAAATCCGCTCAGGCGATGGCAGATCT
GTGTGTGCAAAAGCCCAGCCCGCTCAGCAGAAGTTTCGACAACGAGCTGT
TTCGGGCGTTGAATTGGGTCAAGCGGCACGTGATTGAGAGTTGCTCGCCT
CTAACCCTCGGCGAGACCGAAGGGGTGAAGACAAACGTGCTGTTGTCCGC
TCGGGGCTTCCCTCCCAGCCGCATCCGCAAGCAAGAGGTGAAGAGGATGG
TGGTCGAGTGCTATGCCGCTACCGCTGCCCGATTCAAGAAGGAGATAGCC
ACTGAGGTGGCGGGCGTGCCGTGTCTGCACCTCAGCCTCGAACTGTGGGT
TGACAAGTCATCGAGCTTAAAATACATGGGTGTTCGGCTGTTCTACGTCA
ACTCTGCTTGGCATCTGAAGTCATACCTCCTCGCCGTTCGGCAGTTCAAC
CCTTCGCCGGGGACGCTCAAGAATGAGCGTCTCTCTGAGCTCCTCGAGAA
GTACGTCTTCGCCGTGCTGGAGGAGTTCGGCGTCGACGCGTCGCTGCTGT
TCTCAGCGACAAACGATGCCCCCGGCGACGTCAAGCGCCTGTGCAGTGTG
CTGCTCCCGGGGCTACGGGAGTGGTGCGTGTGCCACATGCTCAATGATTC
TCTGGCTGAGGCCATCGGTAACTGCGTGGACCCACAAAAGCCGGGCGATC
GTGCCGCACGCAACGTGGTCGTGACGGTGAAGAAAGCCGTGGAGCGCGTT
CGCAAGTCTCCTGCTGGAAAGGATATCTTTACGGAGGAGCAACTTCTTCA
CTTCTCGCAGTGCTCAAACCGCAAGGTGGTCAACGCGGCACCACAGCGGT
GGTCTGGTGTGACCAGCATCCTCGAGGCAATCGTCACCAACCGTGCTGCC
ATCAACGAGGTGTATGCCGAGGAAGGGAAGGACAACCCGCTGTCGCCGCA
TGTGCACGAGATCGACGAGCTGTATTCCCTCATTTAG
back to top