mRNA_Ecto-sp13_S_contig7742.18978.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7742.18978.1
Unique NamemRNA_Ecto-sp13_S_contig7742.18978.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7742.18978.1 vs. uniprot
Match: A0A6H5KVE7_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE7_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 9.180e-26
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    7 VEGDTNKAIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFI 165
            VEGDTNK IHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAF+
Sbjct:  123 VEGDTNKTIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFV 175
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BLAST of mRNA_Ecto-sp13_S_contig7742.18978.1 vs. uniprot
Match: D8LLT5_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.730e-25
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    7 VEGDTNKAIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFI 165
            VEGDTNK IHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAF+
Sbjct:  379 VEGDTNKTIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFV 431
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BLAST of mRNA_Ecto-sp13_S_contig7742.18978.1 vs. uniprot
Match: D8LKC9_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC9_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.900e-14
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   16 DTNKAIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFI 165
            DT K IH+ YDLKGSSLGR AK GEKVLKDNDL  + GK+HLGSQ+ AF+
Sbjct:  637 DTYKEIHNTYDLKGSSLGRDAKPGEKVLKDNDLAERQGKLHLGSQREAFL 686
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BLAST of mRNA_Ecto-sp13_S_contig7742.18978.1 vs. uniprot
Match: A0A6H5KUU1_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.910e-14
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   16 DTNKAIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFI 165
            DT K IH+ YDLKGSSLGR AK GEKVLKDNDL  + GK+HLGSQ+ AF+
Sbjct:  912 DTYKEIHNTYDLKGSSLGRDAKPGEKVLKDNDLAERQGKLHLGSQREAFL 961
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BLAST of mRNA_Ecto-sp13_S_contig7742.18978.1 vs. uniprot
Match: A0A6H5JMY7_9PHAE (PIPK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMY7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.440e-9
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    7 VEGDTNKAIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFI 165
            ++G     IH KYDLKGS + R+AKEGEKVLKDN+L     K  LGSQ+ AF+
Sbjct:  261 IDGTAQMKIHKKYDLKGSKVHRTAKEGEKVLKDNNLREAKTKFRLGSQRDAFL 313
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7742.18978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KVE7_9PHAE9.180e-2696.23PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LLT5_ECTSI3.730e-2596.23PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LKC9_ECTSI1.900e-1472.00PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUU1_9PHAE1.910e-1472.00PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JMY7_9PHAE1.440e-956.60PIPK domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7742contigEcto-sp13_S_contig7742:6727..6891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score105.1
Seed ortholog evalue1e-20
Seed eggNOG ortholog2880.D8LLT5
Model size165
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
EC2.7.1.68
Cds size165
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464044.440857-CDS-Ecto-sp13_S_contig7742:6726..68911681464044.440857-CDS-Ecto-sp13_S_contig7742:6726..6891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7742 6727..6891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7742.18978.1prot_Ecto-sp13_S_contig7742.18978.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7742 6727..6891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7742.18978.1

>prot_Ecto-sp13_S_contig7742.18978.1 ID=prot_Ecto-sp13_S_contig7742.18978.1|Name=mRNA_Ecto-sp13_S_contig7742.18978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
NSVEGDTNKAIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQ
KAAFI
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mRNA from alignment at Ecto-sp13_S_contig7742:6727..6891-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7742.18978.1 ID=mRNA_Ecto-sp13_S_contig7742.18978.1|Name=mRNA_Ecto-sp13_S_contig7742.18978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7742:6727..6891- (Ectocarpus species13 EcNAP12_S_4_19m)
AACAGCGTGGAGGGGGATACGAACAAGGCGATCCATTCCAAGTATGACCT
CAAGGGGAGCAGCCTGGGCCGTTCGGCCAAGGAAGGGGAGAAGGTCCTCA
AGGATAACGACCTCGACGTCAAGTACGGGAAGATACACCTGGGCTCCCAG
AAGGCCGCGTTTATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7742:6727..6891-

>mRNA_Ecto-sp13_S_contig7742.18978.1 ID=mRNA_Ecto-sp13_S_contig7742.18978.1|Name=mRNA_Ecto-sp13_S_contig7742.18978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7742:6727..6891- (Ectocarpus species13 EcNAP12_S_4_19m)
AACAGCGTGGAGGGGGATACGAACAAGGCGATCCATTCCAAGTATGACCT
CAAGGGGAGCAGCCTGGGCCGTTCGGCCAAGGAAGGGGAGAAGGTCCTCA
AGGATAACGACCTCGACGTCAAGTACGGGAAGATACACCTGGGCTCCCAG
AAGGCCGCGTTTATC
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