mRNA_Ecto-sp13_S_contig7741.18976.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig7741.18976.1
Unique Name	mRNA_Ecto-sp13_S_contig7741.18976.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7741.18976.1 vs. uniprot
Match: D7FV48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV48_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 3.140e-28
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 3

Query:    6 MSEGEPAEPRHGVGDTVAVTHEGNAAAEDEDRRVMALASELRISSSITPRELVSLRTTTPLESNDELE 209
            MSEGEPAEPRHGVGD VA  HEGN AAEDEDRRVMALASELRISSSITP ELVSLRTTTPLESNDEL+
Sbjct:    1 MSEGEPAEPRHGVGDPVAAMHEGNTAAEDEDRRVMALASELRISSSITPGELVSLRTTTPLESNDELD 68

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig7741.18976.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig7741.18976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FV48_ECTSI	3.140e-28	91.18	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig7741	contig	Ecto-sp13_S_contig7741:2720..5173 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	121.3
Seed ortholog evalue	3.1e-25
Seed eggNOG ortholog	2880.D7FV48
Preferred name	PIBF1
Model size	374
KEGG ko	ko:K16538
Hectar predicted targeting category	other localisation
GOs	GO:0000070,GO:0000226,GO:0000278,GO:0000280,GO:0000819,GO:0001817,GO:0001818,GO:0001819,GO:0001932,GO:0001933,GO:0001934,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003674,GO:0005102,GO:0005126,GO:0005136,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010562,GO:0010563,GO:0010565,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010648,GO:0015630,GO:0016043,GO:0016310,GO:0018108,GO:0018193,GO:0018212,GO:0019216,GO:0019217,GO:0019220,GO:0019222,GO:0019538,GO:0022402,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031392,GO:0031393,GO:0031399,GO:0031400,GO:0031401,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032653,GO:0032655,GO:0032695,GO:0032733,GO:0032814,GO:0032815,GO:0033036,GO:0033365,GO:0033674,GO:0034451,GO:0034613,GO:0036211,GO:0042304,GO:0042325,GO:0042326,GO:0042327,GO:0042509,GO:0042531,GO:0042532,GO:0042976,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044380,GO:0044421,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044782,GO:0045717,GO:0045833,GO:0045859,GO:0045860,GO:0045922,GO:0045936,GO:0045937,GO:0046425,GO:0046426,GO:0046427,GO:0046890,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050000,GO:0050730,GO:0050731,GO:0050732,GO:0050789,GO:0050790,GO:0050794,GO:0050865,GO:0050866,GO:0051055,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051250,GO:0051276,GO:0051303,GO:0051310,GO:0051338,GO:0051347,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060271,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0070727,GO:0070851,GO:0070925,GO:0071539,GO:0071704,GO:0071840,GO:0072698,GO:0080090,GO:0090307,GO:0098813,GO:0120031,GO:0120036,GO:0140014,GO:1901564,GO:1902531,GO:1902532,GO:1902533,GO:1902850,GO:1903047,GO:1904892,GO:1904893,GO:1904894,GO:1905508,GO:1905515,GO:2001279
Exons	2
EggNOG OGs	28J7Y@1,2QRKC@2759
Cds size	369
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03036

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464044.2904267-UTR-Ecto-sp13_S_contig7741:2719..2724	1681464044.2904267-UTR-Ecto-sp13_S_contig7741:2719..2724	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig7741 2720..2724 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464044.3022559-CDS-Ecto-sp13_S_contig7741:2724..3014	1681464044.3022559-CDS-Ecto-sp13_S_contig7741:2724..3014	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7741 2725..3014 +
1681464044.3123183-CDS-Ecto-sp13_S_contig7741:5094..5173	1681464044.3123183-CDS-Ecto-sp13_S_contig7741:5094..5173	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7741 5095..5173 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig7741.18976.1	prot_Ecto-sp13_S_contig7741.18976.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig7741 2725..5173 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig7741:2720..5173+
coding sequence from alignment at Ecto-sp13_S_contig7741:2720..5173+

protein sequence of mRNA_Ecto-sp13_S_contig7741.18976.1

>prot_Ecto-sp13_S_contig7741.18976.1 ID=prot_Ecto-sp13_S_contig7741.18976.1|Name=mRNA_Ecto-sp13_S_contig7741.18976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MSEGEPAEPRHGVGDTVAVTHEGNAAAEDEDRRVMALASELRISSSITPR
ELVSLRTTTPLESNDELEDDEEEEKEEGRDQEEPSDRGGRTGFFSDSTGA
TAVSPPPSSSAPGRGAAAAIAAT

mRNA from alignment at Ecto-sp13_S_contig7741:2720..5173+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig7741.18976.1 ID=mRNA_Ecto-sp13_S_contig7741.18976.1|Name=mRNA_Ecto-sp13_S_contig7741.18976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2454bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7741:2720..5173+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGGATGAGCGAAGGCGAGCCGGCAGAACCCCGTCATGGGGTCGGCGAT
ACCGTGGCCGTCACACACGAGGGAAACGCCGCTGCAGAGGATGAGGATCG
CCGGGTGATGGCCTTGGCAAGCGAGCTCAGGATCTCATCGTCGATCACGC
CGCGCGAGCTCGTGTCTCTGCGCACCACGACTCCGCTGGAGAGCAACGAT
GAGCTAGAAGACGACGAAGAGGAGGAGAAGGAAGAGGGACGAGACCAAGA
GGAACCAAGCGACAGGGGAGGGCGGACTGGTTTCTTCTCGGACAGGTGCT
TTGATATCCTTTGTGAAATACACTCGCCGTTGTGTCCATTTTGAACTACT
GCTGTGAAATGGCGGGAAAGATCTTTGATCCATGAAGTCTACGCACATGA
TGGACGGACCGGGATTGCGTCTTGACAATGTAACACACTTGTGTGCACCT
GCCGTACGCCCCAGAGGGGATCCGAAGCCATTCTCGAGCAATACCGGCAT
AATCAGGCATCAGTTTTGTACGTTGCCTGGTAGTTTGTATGAGGGTGTCC
ATCCGGTTGTGACATCGCCCGCCGCGAAGTGTGCCATGCATTTTCTCTGT
TTCGGGAGAACGTCACTCCTGCATTACATACGTCAAAGTCGGCGCGACTA
CTGCACGTAGTACAGCAGTAGTGCGCTCTTTTTGGTGCTCTGGGTCTAAA
CCCCGAGGCCACGAGAGCGTGCGAGGGTTTACAACGGGCTGGGTTTGTCT
TGCTCTTCTTCTGGTGTAAACTGTATGTGTGCACATGGATGAGTTGTGGC
GCCATACAGCAGACACATCATGTAAATTTACTGCTGTACCCGAAGCTTGT
GCCCTCGATGTACGTGGGTGGTACGTAGGGAGGGAGCGGGTTTACACTCT
ACGACAGGATGTTGTGTGTGCATGTAGTCTGTCTTCTTTTCTGTTCGCGA
CCAGGTGCATTCCATCCTCTTCACGAGGGCGTGAGCCTTCCTCTTCCACT
ACTCCCAACACCGGCACAAAAACTGTACGGTGGGTGGGCGAGGCTTGTTC
ACCAGTTCAGTACGTATACGTAGTACACAGCAGCGGTGGGTACAGTATTA
GTTGCTGTAAATACGACCTGACCTGCTGTGCATGTAAACTATGATCCACA
TGCGTAACTCTCATAAGCACTACTGGTACATATCAGCCAAGTGCAGCTCG
CCCTTCATGCTGCAGGCAGAGGCGACGACCGTAAGCATCGCTTGTGTGAG
AAGGCGTTATCAATGGTACGCTAACGTTATGGGCAGCAAAAAAAGCCACC
GGGACAGATTTAACTTGGCGTCCGCCAATCAGCTGTCTCCATTTCACTTG
GCGCCTACTTGGCGTCCTCTCTATTTTCGAGTAGTTTTGGCAATTACGCC
GCTTTTTCTTCTGCGCGCACCGTATTCGAAACGACCAGTTCAGAGACCGG
CACACACATCAGGCATCAGGCGGGAGTCTGGGCGCTGCCCCTGGCGCATA
TAGACGCCAACAACAGCAGAGACCACTCTGGTTTCTGTGTGCACGAAGTT
TCGCAATCTCAATCCACACTGAGTGTCGATGACGAGCACGCAGCAGCGCA
GACGGACAGGCCGGAAGAGCTACAGCGAGGAGAGAGAGGGAGATCGCAAA
AACACGCACGCACGCACACTCGCGAGAATATTTATGTCCAGCTACTGCAG
CACAACAGCAGTATCCACACCCAGGGATCCATGCATGATTTATATCATCT
GCACGCCCGTCCTCTCGCCAGAACACTTGTCATGTATGATCCCCTGGCAC
CTCCTCCGCGTTGTTTTTTTCGCTCTCTTGACTCCGTCTTTCGGTAGGTT
CTTCGGAGTGAACACCCCACACAAACCTATCGCCATCAATCATCTATCCC
GATACATCGGTCTGTTGACAACCCGTATGGTAGAATGTGCGCACGGTGAT
TTCTTTGCTGCCCCGGCGACGGCACCTTTGCTCTGGTGTCTCCTTTCCTT
CATTGATTCATTGAGTGAGGTACAACATTTTGAAAGTGTGTGGCCCGCAG
ATGAAAATGGGTTTCACCGCGCACTGGCGGGCTTCGCCCGCGTAATTAAA
CTCCTGAAAGCTCTGTCCCTGTACATTCAAAATTTGCCGTTATGAACACC
TTGCATCCGTTTCCACACTAATCGCAAATCAACCCGACTTATTCAAGCCT
ATACTAGCGACATGCACTAAAACGCAAAACACGTGACGGCACCAGCCCAC
AAGAGTCGCCCTTCACTGCACCACTGATGACACATACCGGACCCGACCCA
ACAAAAATCCTCAATCCGAACGATCGCGCTCTCGAAAAACGTCGGAACTC
GGGAAATCGTCACGAAACAACCCAGCACCGGTGCCACAGCAGTGTCACCA
CCTCCTTCGTCCTCTGCGCCGGGGCGGGGAGCCGCGGCAGCGATAGCAGC
AACG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7741:2720..5173+

>mRNA_Ecto-sp13_S_contig7741.18976.1 ID=mRNA_Ecto-sp13_S_contig7741.18976.1|Name=mRNA_Ecto-sp13_S_contig7741.18976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7741:2720..5173+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGAAGGCGAGCCGGCAGAACCCCGTCATGGGGTCGGCGATACCGT
GGCCGTCACACACGAGGGAAACGCCGCTGCAGAGGATGAGGATCGCCGGG
TGATGGCCTTGGCAAGCGAGCTCAGGATCTCATCGTCGATCACGCCGCGC
GAGCTCGTGTCTCTGCGCACCACGACTCCGCTGGAGAGCAACGATGAGCT
AGAAGACGACGAAGAGGAGGAGAAGGAAGAGGGACGAGACCAAGAGGAAC
CAAGCGACAGGGGAGGGCGGACTGGTTTCTTCTCGGACAGCACCGGTGCC
ACAGCAGTGTCACCACCTCCTTCGTCCTCTGCGCCGGGGCGGGGAGCCGC
GGCAGCGATAGCAGCAACG