mRNA_Ecto-sp13_S_contig7727.18963.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7727.18963.1
Unique NamemRNA_Ecto-sp13_S_contig7727.18963.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7727.18963.1 vs. uniprot
Match: D8LJT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT9_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 2.820e-48
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 2 
Query:   11 QTPILRDLPHTVRMKLVFDTHQHLLRTLIFFEDFQASVITEMVYRLKPMQLKRKEYVGKAGDVLDNVFFVVTGRIEARVTKPGKQ 265
            QTPILRDLPHTVRMKLVFDTHQHLLRTLIFFEDFQASVITEMVYRLKPMQLKRKEYVGKAGDVLDNVFFVVTGRIEARVTKPGKQ
Sbjct:  409 QTPILRDLPHTVRMKLVFDTHQHLLRTLIFFEDFQASVITEMVYRLKPMQLKRKEYVGKAGDVLDNVFFVVTGRIEARVTKPGKQ 493
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BLAST of mRNA_Ecto-sp13_S_contig7727.18963.1 vs. uniprot
Match: A0A6H5KRN3_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 8.940e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:   50 MKLVFDTHQHLLRTLIFFEDFQASVITEMVYRLKPMQLKRKE 175
            MKLVFDTHQHLLRTLIFFEDFQASVITEMVYRLKPMQLKRK+
Sbjct:    1 MKLVFDTHQHLLRTLIFFEDFQASVITEMVYRLKPMQLKRKD 42
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BLAST of mRNA_Ecto-sp13_S_contig7727.18963.1 vs. uniprot
Match: A0A3P8WY20_CYNSE (Cyclic nucleotide gated channel subunit alpha 2 n=4 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WY20_CYNSE)

HSP 1 Score: 51.2 bits (121), Expect = 1.860e-5
Identity = 20/72 (27.78%), Postives = 42/72 (58.33%), Query Frame = 2 
Query:   20 ILRDLPHTVRMKLVFDTHQHLLRTLIFFEDFQASVITEMVYRLKPMQLKRKEYVGKAGDVLDNVFFVVTGRI 235
            +L+ LP  +R ++  + H   L+ +  F+D +AS++ E+V +L+P      +Y+ + GDV   ++ +  GR+
Sbjct:  414 VLKSLPTKLRAEIAINVHLETLKKVCIFQDCEASLLVELVLKLRPQVFSPGDYICRKGDVGKEMYIIKDGRL 485
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BLAST of mRNA_Ecto-sp13_S_contig7727.18963.1 vs. uniprot
Match: A0A835JI01_9ROSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835JI01_9ROSI)

HSP 1 Score: 49.7 bits (117), Expect = 6.530e-5
Identity = 23/81 (28.40%), Postives = 44/81 (54.32%), Query Frame = 2 
Query:   20 ILRDLPHTVRMKLVFDTHQHLLRTLIFFEDFQASVITEMVYRLKPMQLKRKEYVGKAGDVLDNVFFVVTGRIEARVTKPGK 262
            ++++LP  +R  +   +   LL+ +  FE  +  V+  M  RLKP+    + Y+ + GD +D + FV+ G++  R T  G+
Sbjct:  456 LVQNLPRDLRRDIKRHSCLDLLKRVPMFEKMEEQVLDAMCDRLKPVLYTEESYIVREGDPVDEMLFVMQGKLSTRTTSGGR 536
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7727.18963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJT9_ECTSI2.820e-48100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRN3_9PHAE8.940e-1897.62Cyclic nucleotide-binding domain-containing protei... [more]
A0A3P8WY20_CYNSE1.860e-527.78Cyclic nucleotide gated channel subunit alpha 2 n=... [more]
A0A835JI01_9ROSI6.530e-528.40Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7727contigEcto-sp13_S_contig7727:1069..2066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size267
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464043.2447598-CDS-Ecto-sp13_S_contig7727:1068..11631681464043.2447598-CDS-Ecto-sp13_S_contig7727:1068..1163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7727 1069..1163 -
1681464043.2640643-CDS-Ecto-sp13_S_contig7727:1894..20661681464043.2640643-CDS-Ecto-sp13_S_contig7727:1894..2066Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7727 1895..2066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7727.18963.1prot_Ecto-sp13_S_contig7727.18963.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7727 1069..2066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7727.18963.1

>prot_Ecto-sp13_S_contig7727.18963.1 ID=prot_Ecto-sp13_S_contig7727.18963.1|Name=mRNA_Ecto-sp13_S_contig7727.18963.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
ALLTDANSTRLTTHSPNEACLRYPPASPAHANFLRGFPSLRHHRDGLPPQ
ADAAQAQGVRRESWRCSGQRVFRGDRQDRGEGDQARKAG
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mRNA from alignment at Ecto-sp13_S_contig7727:1069..2066-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7727.18963.1 ID=mRNA_Ecto-sp13_S_contig7727.18963.1|Name=mRNA_Ecto-sp13_S_contig7727.18963.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=998bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7727:1069..2066- (Ectocarpus species13 EcNAP12_S_4_19m)
GCACTCTTGACAGACGCCAATTCTACGAGACTTACCACACACAGTCCGAA
TGAAGCTTGTCTTCGATACCCACCAGCATCTCCTGCGCACGCTAATTTTC
TTCGAGGATTTCCAAGCCTCCGTCATCACCGAGATGGTCTACCGCCTCAA
GCCGATGCAGCTCAAGCGCAAGGTAAGAAAGGTACACCGGTTGTAGACAC
AACCTTAGTGGCGTTGTAGATGTCCCTGATATCGTTTTTTCGCTCTCTAC
TGGATGTTGCTCGAGCCTCAGGGAAGACACGATCAAACACTCCCCGTTCA
TATCATGGTACTCCTAGAAACATTGGGAGGGTGTTGGAAAGGCAAGCCTA
CACCTTCACCTTCACCTTGGCATCACGCCACGGATACGCAGGTCCGAGAA
ATCGACCTAAGTCTGATGAGTTCCAGAGAAAAATAATATACGATGCTCAT
GAGCGGTCCGAGATATTGATAAGGCTGCTTCACGATCTTTTTTATCGCCA
TGAAAAGGGAATACCAACAAATGTTTTCACCCGTATATTGATGGACGGTG
CAAGCTTGTTCTCGAGCGAATCATCCTGCCCCATTTCTTGAGGCAGCACG
CTTTCTCTCATCCCACTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTTTCTGTCCCCGCTCATCTACCTTCGGCCTCTCGCTCCCT
CATTCTTTTGCTTTCCTTGTCACCGCGAAAGAAAGACATGTTCGACATTT
GACGCGTCAAAGGAAGTAGACGCTTTGCACCATGGGATGATCAGTTGAAG
AACTACCTCGGCGGCTACCTTGTAGATGTTCCCTCTCACACCAGCAAGCT
GCACCACTGATCTACTCAATGTTAAGTCTTCTACCACCTCCACTTGCGTC
CAGGAGTACGTCGGGAAAGCTGGCGATGTTCTGGACAACGTGTTTTTCGT
GGTGACCGGCAGGATCGAGGCGAGGGTGACCAAGCCAGGAAAGCAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7727:1069..2066-

>mRNA_Ecto-sp13_S_contig7727.18963.1 ID=mRNA_Ecto-sp13_S_contig7727.18963.1|Name=mRNA_Ecto-sp13_S_contig7727.18963.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7727:1069..2066- (Ectocarpus species13 EcNAP12_S_4_19m)
GCACTCTTGACAGACGCCAATTCTACGAGACTTACCACACACAGTCCGAA
TGAAGCTTGTCTTCGATACCCACCAGCATCTCCTGCGCACGCTAATTTTC
TTCGAGGATTTCCAAGCCTCCGTCATCACCGAGATGGTCTACCGCCTCAA
GCCGATGCAGCTCAAGCGCAAGGAGTACGTCGGGAAAGCTGGCGATGTTC
TGGACAACGTGTTTTTCGTGGTGACCGGCAGGATCGAGGCGAGGGTGACC
AAGCCAGGAAAGCAGGT
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