mRNA_Ecto-sp13_S_contig77172.18955.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77172.18955.1
Unique NamemRNA_Ecto-sp13_S_contig77172.18955.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77172.18955.1 vs. uniprot
Match: D8LIT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIT0_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 7.010e-22
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 VLTVYHGGAVISGVPLMLSVLRCGYSYKFVGRDQEACWAHHGY 129
            VLTVYHGG VISGVPLMLSVLRCGYSYKFVGRDQEACWAHHGY
Sbjct:  185 VLTVYHGGTVISGVPLMLSVLRCGYSYKFVGRDQEACWAHHGY 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77172.18955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIT0_ECTSI7.010e-2297.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77172contigEcto-sp13_S_contig77172:2..130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464042.6423936-CDS-Ecto-sp13_S_contig77172:1..1301681464042.6423936-CDS-Ecto-sp13_S_contig77172:1..130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77172 2..130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77172.18955.1prot_Ecto-sp13_S_contig77172.18955.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77172 2..130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77172.18955.1

>prot_Ecto-sp13_S_contig77172.18955.1 ID=prot_Ecto-sp13_S_contig77172.18955.1|Name=mRNA_Ecto-sp13_S_contig77172.18955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
VLTVYHGGAVISGVPLMLSVLRCGYSYKFVGRDQEACWAHHGY
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mRNA from alignment at Ecto-sp13_S_contig77172:2..130-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77172.18955.1 ID=mRNA_Ecto-sp13_S_contig77172.18955.1|Name=mRNA_Ecto-sp13_S_contig77172.18955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77172:2..130- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCTCACCGTGTACCACGGAGGAGCCGTGATAAGCGGCGTGCCGCTGAT
GCTCTCGGTTTTGCGCTGCGGCTACAGCTACAAATTTGTCGGGCGCGATC
AGGAGGCGTGCTGGGCTCACCATGGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77172:2..130-

>mRNA_Ecto-sp13_S_contig77172.18955.1 ID=mRNA_Ecto-sp13_S_contig77172.18955.1|Name=mRNA_Ecto-sp13_S_contig77172.18955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77172:2..130- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCTCACCGTGTACCACGGAGGAGCCGTGATAAGCGGCGTGCCGCTGAT
GCTCTCGGTTTTGCGCTGCGGCTACAGCTACAAATTTGTCGGGCGCGATC
AGGAGGCGTGCTGGGCTCACCATGGGTAC
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