mRNA_Ecto-sp13_S_contig7714.18954.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7714.18954.1
Unique NamemRNA_Ecto-sp13_S_contig7714.18954.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7714.18954.1 vs. uniprot
Match: A0A6H5KJB2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.580e-15
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 1 
Query: 1012 VREFRARAMRYLFGHDHDEYEENDSGRGAGETIEAFARRCLTESKRIT 1155
            +RE RAR M YLFGHDHDE+EENDSGRGAGETIEAFARRCL ESKRIT
Sbjct:  784 LRELRARTMWYLFGHDHDEHEENDSGRGAGETIEAFARRCLAESKRIT 831
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7714.18954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJB2_9PHAE3.580e-1587.50Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7714contigEcto-sp13_S_contig7714:2902..5667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1158
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_002040.1
Cds size1158
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464042.5419173-CDS-Ecto-sp13_S_contig7714:2901..33451681464042.5419173-CDS-Ecto-sp13_S_contig7714:2901..3345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7714 2902..3345 +
1681464042.5534523-CDS-Ecto-sp13_S_contig7714:3856..40871681464042.5534523-CDS-Ecto-sp13_S_contig7714:3856..4087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7714 3857..4087 +
1681464042.5661626-CDS-Ecto-sp13_S_contig7714:4562..47201681464042.5661626-CDS-Ecto-sp13_S_contig7714:4562..4720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7714 4563..4720 +
1681464042.586846-CDS-Ecto-sp13_S_contig7714:4953..51311681464042.586846-CDS-Ecto-sp13_S_contig7714:4953..5131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7714 4954..5131 +
1681464042.6037548-CDS-Ecto-sp13_S_contig7714:5520..56671681464042.6037548-CDS-Ecto-sp13_S_contig7714:5520..5667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7714 5521..5667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7714.18954.1prot_Ecto-sp13_S_contig7714.18954.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7714 2902..5667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7714.18954.1

>prot_Ecto-sp13_S_contig7714.18954.1 ID=prot_Ecto-sp13_S_contig7714.18954.1|Name=mRNA_Ecto-sp13_S_contig7714.18954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=386bp
MPRGGLTLRDRHRSAGSNGLHRQQTERPSSGRNPEVNAPSAKDADGLCEP
DENLKDRAALGVSHGGLEVRKDARETCAEGQTSMSRERTEIGPVYSRWHE
IKESSLLANAWREKAEEVVMQTTGCGAKVTSSTDCKRACYPPQWDYFRDR
RREPIDRSKITVPQSLIGRVSADAAMERLKVPPTITTCWQTSCTGETPRK
VAGPSARRDTRSSTTGRVSAYLSIKAEQIRSRRDHERWLLRVASGLHTPT
QDPLRLAEDCLESTICLTGNTQRQLGTSPPPGGCADSNHEKLDHLNILEP
HESEADERAAAERREFLSCAHLEGLVDSARRLLEDEAVREFRARAMRYLF
GHDHDEYEENDSGRGAGETIEAFARRCLTESKRIT*
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mRNA from alignment at Ecto-sp13_S_contig7714:2902..5667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7714.18954.1 ID=mRNA_Ecto-sp13_S_contig7714.18954.1|Name=mRNA_Ecto-sp13_S_contig7714.18954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2766bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7714:2902..5667+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCGTGGCGGACTAACGCTACGAGACAGACACAGAAGTGCTGGTTC
GAACGGTCTCCACAGGCAGCAAACAGAGCGCCCTTCCAGCGGGAGGAATC
CCGAGGTTAATGCTCCTTCCGCCAAGGACGCCGATGGGCTTTGCGAGCCT
GACGAAAATCTTAAGGATCGCGCGGCTCTAGGAGTTTCCCACGGAGGGCT
AGAGGTCCGAAAAGATGCGCGTGAAACATGCGCGGAAGGTCAAACGTCAA
TGTCGAGGGAAAGAACTGAGATTGGTCCAGTGTATTCGCGTTGGCATGAG
ATCAAGGAGAGTTCGTTGCTCGCGAACGCATGGAGAGAAAAGGCCGAGGA
GGTTGTGATGCAGACAACGGGTTGCGGGGCCAAAGTTACCTCTTCCACCG
ACTGCAAGAGAGCATGTTACCCCCCGCAATGGGACTACTTTCGGGTACGA
AGAGAAGGGAGCAGGTAACGTGCGTCAGCCGTGAATCGCCTATCGGTTCA
TGTCGAGAGTTGACTCCCCTGTACTCTGTTGACGTTGGTCACTGAATTTG
CACGTGAGGTTACGGGGATGCCACCTTTGTTGAAAGACGAAATGTAGATC
GCAGTGTCCACTTGTCACGCGCAGTGGCCACTTGTCAGACCTAGCTGCCA
AAAGATGCTCTCAACACGCCTTTTGTAGGGGAATCCCTGCTCAGTGTTTG
CTAGATATGGTGGGTTGCTCTCGTGTTTTCTCTGGCACCGTTGCCACCCA
CGCTTCGTGCTTCTGGCGTGATTGTCGCTCCGGCCTACACCCTTGTGTTT
TGGGCACCATTCCCCCACCTTCTGCCCCCTCGCTCGAGCACGAGTTGCTC
TGCTTCCGCGACATTTTGAGGAACTAAGCGTACGATTGACGACACGTTAA
GATCCATCCCCCCGTCATCTAAATTCTGCATTGATGCCGGACCCTACACA
CGCAGGATCGACGACGGGAACCAATTGACCGGTCCAAAATAACAGTACCG
CAGTCTCTGATCGGGAGGGTTAGCGCCGACGCAGCAATGGAGAGATTGAA
AGTTCCACCCACGATTACGACGTGTTGGCAAACCAGCTGTACCGGGGAAA
CTCCGAGAAAAGTGGCCGGGCCTTCGGCGCGAAGAGACACCCGGTCATCA
ACGACAGGAAGAGTTTCTGCTTACCTTTCCATCAAGGTCAGAGAGGTTGA
CATGTCGAACCTTTGCGTCGTGTTTGAGGAAGTTGCACTTAGAGTCATCG
AATGGGCGAATCACGTGGCGGGAGTGTTTCGGCCGGAACGTGGAGAAGGC
GCAGGCAAAACGGTCAGGTGTGTGTGTGATATCGTATCAAGGTGATGTGG
CTCTACCTTAATGGACTGTCGGAATCACGGCCCCGCCCATCTCAAGGCCG
CTAAGTGCCCTATTGTTCAATATTGTAGAACTCCGTCGAAATTACCATGC
CTTGGAGTGCGTAAAGGCTCCAACCTTCGTGTCCAGACTGGACCAAGGAT
TCTAAATGTCCGAGACTGCTGAGTATTTCGGAAAATGGCGGTTCCCACTG
CACCTTCTGTTGTTCCTCCGCCTGGTTCGTCCTCGTGACGCAAATCAAAT
CCCATATTGGATCAAGGCTGAACGTCTGCTCTATCTCGTGATTTTGTGTT
TTGTACTTCAGGCGGAGCAAATTCGAAGTCGTCGCGACCACGAGCGTTGG
TTGTTAAGGGTTGCTAGTGGACTCCACACACCCACTCAAGACCCGCTTAG
GCTCGCCGAGGATTGCCTAGAAAGTACCATTTGTCTAACGGGAAACACCC
AAAGGCAGCTGGGAACAAGGTAACCGAGAGTCCTGCGGAATTTCTAGCCG
TTACATTCGAACACAGGAACCGCCTTGCATGCGCTGGCCACCAGGTGTGT
TCGGGAGAACCGGCTTGGCCTTGGCGGGCCGTAAGCACGCGCTCTCCAAA
CTGGGTCTCGAAATGTCAGCAAGGATCGGCCTAACATAATTCCCAAGCAT
GATGTTCTCTGTTCTCTCGCCTTTTTCGGTCTCCGCTCCTCGTGCCAAGA
AGCCCTCCGCCTGGTGGCTGCGCGGATTCAAACCACGAGAAGTTGGACCA
CCTCAACATTCTTGAGCCACATGAGAGCGAAGCCGATGAACGAGCCGCCG
CCGAACGGAGAGAATTCCTGTCGTGTGCACACCTGGAAGGACTCGTCGAC
TCCGCACGGCGGCTGCTGGAGGACGAAGCGGTGAGCACGGCAGCGGATGC
TTGTCCTCGACGGCCACCGGTTTCTGTTTCTGAGCGAAGCCAAGCTGGCG
TGAAGGCCTGGTCGTCGTATCCGACTTTCTTGGTCACAATTCGCACTCAA
CAACGTCTGCCTATGTGTTTTGGTACGCTCCTCTCACCCTACTGTAGACC
CACCACTTAGGTTGGCCGTTTCATGGGCCACTGGGGCTAAGTTGCAGTTG
CCGATGATGGAAGGAGCGGAAGGCACCAAGCCACAACTACTACGTACGCC
TTATGCCAGAAAGTTTTAAAGAAACTTGCATGGAAAAAAACTAGACCGGC
GAGAGACTGACGTTGTATAATACCGTCTGAGTCGCGCAGAATCACACGGC
GCGGGACGGCGTAGTGGAGGTGCGGGAATTTCGGGCTCGAGCGATGCGAT
ACCTTTTCGGCCACGACCATGACGAGTACGAGGAGAACGACTCAGGGCGA
GGGGCTGGAGAGACAATAGAAGCCTTTGCTCGGCGCTGTTTGACTGAAAG
CAAGAGGATTACCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7714:2902..5667+

>mRNA_Ecto-sp13_S_contig7714.18954.1 ID=mRNA_Ecto-sp13_S_contig7714.18954.1|Name=mRNA_Ecto-sp13_S_contig7714.18954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7714:2902..5667+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCGTGGCGGACTAACGCTACGAGACAGACACAGAAGTGCTGGTTC
GAACGGTCTCCACAGGCAGCAAACAGAGCGCCCTTCCAGCGGGAGGAATC
CCGAGGTTAATGCTCCTTCCGCCAAGGACGCCGATGGGCTTTGCGAGCCT
GACGAAAATCTTAAGGATCGCGCGGCTCTAGGAGTTTCCCACGGAGGGCT
AGAGGTCCGAAAAGATGCGCGTGAAACATGCGCGGAAGGTCAAACGTCAA
TGTCGAGGGAAAGAACTGAGATTGGTCCAGTGTATTCGCGTTGGCATGAG
ATCAAGGAGAGTTCGTTGCTCGCGAACGCATGGAGAGAAAAGGCCGAGGA
GGTTGTGATGCAGACAACGGGTTGCGGGGCCAAAGTTACCTCTTCCACCG
ACTGCAAGAGAGCATGTTACCCCCCGCAATGGGACTACTTTCGGGATCGA
CGACGGGAACCAATTGACCGGTCCAAAATAACAGTACCGCAGTCTCTGAT
CGGGAGGGTTAGCGCCGACGCAGCAATGGAGAGATTGAAAGTTCCACCCA
CGATTACGACGTGTTGGCAAACCAGCTGTACCGGGGAAACTCCGAGAAAA
GTGGCCGGGCCTTCGGCGCGAAGAGACACCCGGTCATCAACGACAGGAAG
AGTTTCTGCTTACCTTTCCATCAAGGCGGAGCAAATTCGAAGTCGTCGCG
ACCACGAGCGTTGGTTGTTAAGGGTTGCTAGTGGACTCCACACACCCACT
CAAGACCCGCTTAGGCTCGCCGAGGATTGCCTAGAAAGTACCATTTGTCT
AACGGGAAACACCCAAAGGCAGCTGGGAACAAGCCCTCCGCCTGGTGGCT
GCGCGGATTCAAACCACGAGAAGTTGGACCACCTCAACATTCTTGAGCCA
CATGAGAGCGAAGCCGATGAACGAGCCGCCGCCGAACGGAGAGAATTCCT
GTCGTGTGCACACCTGGAAGGACTCGTCGACTCCGCACGGCGGCTGCTGG
AGGACGAAGCGGTGCGGGAATTTCGGGCTCGAGCGATGCGATACCTTTTC
GGCCACGACCATGACGAGTACGAGGAGAACGACTCAGGGCGAGGGGCTGG
AGAGACAATAGAAGCCTTTGCTCGGCGCTGTTTGACTGAAAGCAAGAGGA
TTACCTAG
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