mRNA_Ecto-sp13_S_contig7687.18916.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7687.18916.1
Unique NamemRNA_Ecto-sp13_S_contig7687.18916.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7687.18916.1 vs. uniprot
Match: D8LH16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH16_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.110e-36
Identity = 143/167 (85.63%), Postives = 150/167 (89.82%), Query Frame = 1 
Query:  403 EVASVPPVAAVSAPPSXXXXXXXXXXXXTGRVXXXXXXXXXXXXXXXXXXSPKTVVAEEKKEXXXXXXXXXXXXXXXXXXXXXXXXXXXX------IKGSGKVASQDEDQLTPLDMLVGPFMVFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLREDEAE 885
            EVAS+PPVAAVSAPPS       XXXXXTG  XXXXXXXXXXXXXXXXXXSPKTVVAEEK++  XXXXXXXXXXXXXXXXXXXXXXXXXX      IKGSGKVASQDED+LTPLDMLVGPFMVFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLRE+E++
Sbjct:  486 EVASIPPVAAVSAPPSPNSGVSAXXXXXTGGXXXXXXXXXXXXXXXXXXXSPKTVVAEEKEKKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEIKGSGKVASQDEDKLTPLDMLVGPFMVFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLRENESD 652
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BLAST of mRNA_Ecto-sp13_S_contig7687.18916.1 vs. uniprot
Match: A0A6H5JEP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEP1_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 5.520e-31
Identity = 133/190 (70.00%), Postives = 138/190 (72.63%), Query Frame = 1 
Query:  403 EVASVPPVAAVSAPPSXXXXXXXXXXXXTGRVXXXXXXXXXXXXXXXXXXSPKTVVAEEKKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXIK----------------------GSGKVASQDEDQLTPLDMLVGPFMVFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLREDEAEEVRTRLE 906
            EVAS+PPV+AVSAPP     XXXXXXXXTG            XXXXX   SPKTVVAEEKKE   XXXXXXXXXXXXXXXXXXXXXXXXX                        GSGKVASQD+DQLTPLDMLVGPF+VFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLRE  AEE   RL+
Sbjct:  516 EVASIPPVSAVSAPPLPNSGXXXXXXXXTG-----------GXXXXXSPNSPKTVVAEEKKEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGKVASQDDDQLTPLDMLVGPFIVFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLRE--AEEQLKRLQ 692
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7687.18916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH16_ECTSI1.110e-3685.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEP1_9PHAE5.520e-3170.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7687contigEcto-sp13_S_contig7687:3663..7301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1035
Hectar predicted targeting categoryother localisation
Exons5
Cds size1035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464038.933389-CDS-Ecto-sp13_S_contig7687:3662..38241681464038.933389-CDS-Ecto-sp13_S_contig7687:3662..3824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7687 3663..3824 -
1681464038.9443123-CDS-Ecto-sp13_S_contig7687:5381..54771681464038.9443123-CDS-Ecto-sp13_S_contig7687:5381..5477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7687 5382..5477 -
1681464038.9555595-CDS-Ecto-sp13_S_contig7687:6219..66451681464038.9555595-CDS-Ecto-sp13_S_contig7687:6219..6645Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7687 6220..6645 -
1681464038.967017-CDS-Ecto-sp13_S_contig7687:6794..70281681464038.967017-CDS-Ecto-sp13_S_contig7687:6794..7028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7687 6795..7028 -
1681464038.9779322-CDS-Ecto-sp13_S_contig7687:7184..73011681464038.9779322-CDS-Ecto-sp13_S_contig7687:7184..7301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7687 7185..7301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7687.18916.1prot_Ecto-sp13_S_contig7687.18916.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7687 3663..7301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7687.18916.1

>prot_Ecto-sp13_S_contig7687.18916.1 ID=prot_Ecto-sp13_S_contig7687.18916.1|Name=mRNA_Ecto-sp13_S_contig7687.18916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=345bp
EEKKEEKKEEKEEEKKEDKREEKEEDKKEEKEEDKKEEKEDKKEVEEKVE
EKDEEKEDKKEDKKEDKKEDKKEDKKEKKEDKEKKEDKEKKEEEDKKEEE
KKEEDKKEEDKEKVEEKKEDKEDKKEDKEDKKEAEVASVPPVAAVSAPPS
PNSGVSAPPPPNTGRVSAPPSPNSGTVSAPPSPNSPKTVVAEEKKEEKKE
EKKEEKKEETNEEKKEDKKEEKVEIKGSGKVASQDEDQLTPLDMLVGPFM
VFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLREDEAEEVRTR
LEKERKAVAASQEEAAAARKAQEQEKREAKEKLAQVEAELQRERE
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mRNA from alignment at Ecto-sp13_S_contig7687:3663..7301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7687.18916.1 ID=mRNA_Ecto-sp13_S_contig7687.18916.1|Name=mRNA_Ecto-sp13_S_contig7687.18916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7687:3663..7301- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGAAGAAGGAGGAGAAGAAGGAGGAGAAGGAAGAGGAGAAGAAGGA
AGACAAGAGGGAGGAGAAGGAGGAAGACAAGAAGGAGGAGAAGGAGGAAG
ACAAGAAGGAGGAGAAGGTGGAGGAGAAGAAGGAGGAGAAGAAGGAGATG
GCGGAGGAGAAGAAGGAAGAGAAGGAGGAGCAGAATGAGGAGAAGGAGGA
AGACAAGAAGGAGGACGACAAGAAGGAGGAAAACAAGAAGGAGGAAGACA
AGAAGGAGGAAGACAAGAAGGAGGAAGACAAGAAGGAGGTTGAGGAGAAG
GTTGAGGAGAAGGATGAGGAGAAGGAAGACAAGAAGGAAGACAAGAAGGA
GGACAAGAAGGAGGACAAGAAGGAGGACAAGAAGGAGAAGAAGGAGGACA
AGGAGAAGAAGGAGGACAAGGAGAAGAAGGAAGAGGAAGACAAGAAGGAG
GAAGAAAAGAAGGAGGAAGACAAGAAGGAGGAAGACAAGGAGAAGGTTGA
GGAGAAGGTTGAGGAGAAGGAAGACAAGAAGGAAGACAAGAAGGAGGACA
AGAAGGAGGACAAGAAGGAGGACAAGGAGAAGAAGGAAGACAAGAAGGAG
GAAGACAAGAAGGAGGAGGACAAGGAGGAGAGAAAAAGGAGAAGAAGGTA
GACAAGAAGGAGGACAAGGAGGACAAGAAGGAGGACAAGGAGGACAAGAA
GGAGGCCGAGGTCGCTTCCGTCCCGCCCGTGGCAGCGGTCTCTGCTCCAC
CTTCGCCGAACAGTGGGGTGTCCGCTCCCCCGCCGCCGAACACCGGAAGG
GTATCGGCTCCGCCGTCACCAAACAGTGGAACTGTCTCTGCTCCGCCGTC
GCCGAACAGCCCGAAGACAGTGGTGGCGGAGGAGAAGAAGGAGGAGAAGA
AGGAAGAGAAGAAGGAAGAGAAGAAGGAAGAGACAAATGAGGAGAAGAAG
GAAGACAAGAAGGAGGAGAAGGTCGAGATCAAGGGAAGCGGGAAGGTGGC
GTCGCAGGACGAGGACCAGCTGACGCCTCTGGACATGCTTGTCGGGCCGT
TCATGGTGTTCGCCACCGGTATGCAGAAAGAGGTGAGTATTTGTTGACCG
CAGCGTAGGATTCACCTACTTGTCCTGTCCGTGAGTTCGCCAAGTGTGGG
GGGAGGAGGAGCGGGCAAGGTTTCCGTACATATCGGCCATAGGCGTTGCG
TGGGCTGGCCGCAAATAGTTTCGCGTTTTTTTCTATTGCGTGTGTGTGGC
TTGGTGTACAGCTGTGCGGGGTTGTTCCGTAGTCGCGCGCTGTGCATGGT
GACTTCGCTGAACACCTCCTTGGGACTCACTGCGTTGTTGGTACTACTCT
TTGGCAGCGCGTAAAGCACAATATGATGCCCTCCGGCGATGGACATGTTA
GCGACGATTACCAAACCAATCAATCAGTCAGTCAGCGCTGACTAGTCCGA
TGGTTGATTTTCGTTCCTAGAACATGACAATGCCTCCTTTTTGAGTTATT
TCTTTACTCGCTCCATTGCTTGGTTGTCTAGCCCAAATGCGATTTTGTAT
GCATACGTTGTGCCTGGCGGGTGTCCATGGTTTCGTAGCATGTCCTCTTT
TTTTATCCCAATGAGTGAATGGCGACCAGACAACACCATTGCCCGGACCT
CCCTGAGCTATGATTGGTTGTCCCTCCAATGCAGCATCCTGAATCTAACC
CTCAACCCTCAATCAGTACAGTCCAGAACCTCCTTGAGACTATCTAAAGC
GTTGGTTGTCCCTTCAATGCGGCATGCTGAATCTAACGCTCACGTTTTTT
TTTTTTTTCTGTCCCCGCCTGCAGGCCGAGTTCCTGGAGGGTGAGCTGAA
CCAGCGGGTTTCGCAAGTTACGGCCGAGTTCCAGGCGGACCGCAAAAACA
TGGAGGAGACCCTCAGAGAGGTATGTATGCACACGTACGGCATGGCGGTG
ACGTCTACAGTTGGTCGATAGATCAATGGGTTCATTTGATCGGTCCATTT
TCATTGTAGCGATGCCCCCCCTCCCCCCCCCCGATCAAAACGAGTAATTC
CTTCTCCACGGCTGGGAGTTCTTGTACCGTGTTTGTTGACGTTTGGCTTC
CGCCTGTTGGCGTCAAGTGGATCGACGTGTCGTGAGGGTGTTTACGATTT
CATCAATGTCGTGCTTTCCGAGTACATCTCCGATGCTCTTGCGTGTTGTT
GTACGGAAGTAACGGACAGAAAGAAGCGTCGACCGTCCTCCAGTTTGCGC
TCGAAATTGCCTTCCTAGGTTCTGCGGTTGGGTTGCCGAAGCGAAACAGC
TCTTGATATTCTTGGTCCCTGCTCGCGCGTCAGTTCTACGTCTCGGACGA
ACGGTTCAACGATGTACCGTACGGTTGAAGCAGGCTTTTCTTGCCGATAA
CGTCGCAGCAGCTTCTCCTAGAGGTTATGTGCTTCTACGACTTACGTGCT
TCTACGACATCTACGACATCTACGACATATACGGCGAGCACCATCCCGAT
ATGTTGCAAGCAGGGCGGGCATAATCGGGCCAACATCAGCAATACGCTCG
GAAAAATGCGTAGGTATAGTTTTGTCTCTCGTTTCTTACCCTGCGGGCGC
ATTCGTGCTATCCCTCCCCTTCGTCCCCCACAATTTTTCGTTGTCCGGGA
TATCGGTGGGAAACAATCAGGCCGAGGAGCAGCTGAAACGGCTCCAGGGG
GTGGCGGCAGAAAAGAAGAAGGCGGAGGAGAGCGCGAGGAAGGTCAAGGC
GGAGGCTGACGAAGCCGTGGCAGGTGCGTTCAGCTTTGGCGGAAGGCAAA
GCAGCAGACCCGCACGACGTGCAGACAGACGGATAGATGTACGGGGCTTT
GACTGCTGGAAGCGTTTATGTCAGCGCTGGAAGTGACGCCGGGAGATTCT
CCTTCAGTGACGGCGTTGCGCATTGTACATCAATGGGGGTAAAACCCACT
CAACGCTGCCTGCGACCGGGTGCCGTCCTCCTCATCGTTACGCTGTGCGG
GCTCTGGCGAATCCAACAAGAAGACTGGCAGGATGACGAGATCGCAGTAG
CCCAGCTCATGCGGGGATGATGCACACCAAAGATCTCGTCATCCTGCCAG
TCTTCTTGTTGGATTCGCCAGAGCCCGCACAGCGTAACGATGAGGAGGAC
GGCACCCGGTCGCACGCAGCGTTGAGCGGGGTCAGAGCCGGTAGGCAATG
TTACTAGGAGACAGCACCTCTCTCTTCCGGTAGACTGGCGTTGTATCGTG
TAGGCCGCCACCTGTTGAACCCGTCGCAGACGACAGCCCTTGCTCACGCC
ACCTACACCTGCTTGTACGACCCCCCCCCCTCCTCCTTCCGCCCCGGAAT
GACAGAGTACAACAGGTCGGCGACCAACCTCTTTTCTCATGCCCACCTAC
ACCTACTTGTACAACCCCCCCTCCGCCCCCAATACCATTCACTGACAGAG
TACAACAGGTCGGCCAACAAGCTCCAGGATGAAGCCGAGGAAGTGAGGAC
GCGTCTCGAGAAGGAGAGGAAAGCCGTCGCCGCCAGCCAGGAAGAAGCGG
CCGCGGCTAGGAAGGCGCAAGAACAGGAGAAGAGAGAGGCCAAAGAGAAG
CTCGCACAAGTGGAGGCGGAGCTGCAGCGTGAGCGCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7687:3663..7301-

>mRNA_Ecto-sp13_S_contig7687.18916.1 ID=mRNA_Ecto-sp13_S_contig7687.18916.1|Name=mRNA_Ecto-sp13_S_contig7687.18916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1035bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7687:3663..7301- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGAAGAAGGAGGAGAAGAAGGAGGAGAAGGAAGAGGAGAAGAAGGA
AGACAAGAGGGAGGAGAAGGAGGAAGACAAGAAGGAGGAGAAGGAGGAAG
ACAAGAAGGAGGAGAAGGAAGACAAGAAGGAGGTTGAGGAGAAGGTTGAG
GAGAAGGATGAGGAGAAGGAAGACAAGAAGGAAGACAAGAAGGAGGACAA
GAAGGAGGACAAGAAGGAGGACAAGAAGGAGAAGAAGGAGGACAAGGAGA
AGAAGGAGGACAAGGAGAAGAAGGAAGAGGAAGACAAGAAGGAGGAAGAA
AAGAAGGAGGAAGACAAGAAGGAGGAAGACAAGGAGAAGGTTGAGGAGAA
GAAGGAGGACAAGGAGGACAAGAAGGAGGACAAGGAGGACAAGAAGGAGG
CCGAGGTCGCTTCCGTCCCGCCCGTGGCAGCGGTCTCTGCTCCACCTTCG
CCGAACAGTGGGGTGTCCGCTCCCCCGCCGCCGAACACCGGAAGGGTATC
GGCTCCGCCGTCACCAAACAGTGGAACTGTCTCTGCTCCGCCGTCGCCGA
ACAGCCCGAAGACAGTGGTGGCGGAGGAGAAGAAGGAGGAGAAGAAGGAA
GAGAAGAAGGAAGAGAAGAAGGAAGAGACAAATGAGGAGAAGAAGGAAGA
CAAGAAGGAGGAGAAGGTCGAGATCAAGGGAAGCGGGAAGGTGGCGTCGC
AGGACGAGGACCAGCTGACGCCTCTGGACATGCTTGTCGGGCCGTTCATG
GTGTTCGCCACCGGTATGCAGAAAGAGGCCGAGTTCCTGGAGGGTGAGCT
GAACCAGCGGGTTTCGCAAGTTACGGCCGAGTTCCAGGCGGACCGCAAAA
ACATGGAGGAGACCCTCAGAGAGGATGAAGCCGAGGAAGTGAGGACGCGT
CTCGAGAAGGAGAGGAAAGCCGTCGCCGCCAGCCAGGAAGAAGCGGCCGC
GGCTAGGAAGGCGCAAGAACAGGAGAAGAGAGAGGCCAAAGAGAAGCTCG
CACAAGTGGAGGCGGAGCTGCAGCGTGAGCGCGAG
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