mRNA_Ecto-sp13_S_contig7667.18896.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7667.18896.1
Unique NamemRNA_Ecto-sp13_S_contig7667.18896.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7667.18896.1 vs. uniprot
Match: A0A6H5JE16_9PHAE (MHD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE16_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 4.610e-62
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 NRCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ 300
            ++CVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ
Sbjct:  241 HQCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ 340
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BLAST of mRNA_Ecto-sp13_S_contig7667.18896.1 vs. uniprot
Match: A0A812XMR1_SYMMI (AP1M1 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A812XMR1_SYMMI)

HSP 1 Score: 190 bits (482), Expect = 1.350e-59
Identity = 90/100 (90.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    1 NRCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ 300
            ++CVRLARFENDRTISFIPPDGEF+LMTYRL THVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVP DVDSP+FKASIG+V Y PD+
Sbjct:   35 HQCVRLARFENDRTISFIPPDGEFELMTYRLNTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPQDVDSPSFKASIGTVTYFPDR 134
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BLAST of mRNA_Ecto-sp13_S_contig7667.18896.1 vs. uniprot
Match: A0A7S2R9Z0_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2R9Z0_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.370e-58
Identity = 92/100 (92.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:    1 NRCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ 300
            ++CVRLARFENDRTISFIPPDGEFDLMTYRL+THVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVP+DVDSP+FKASIG+V YLPD+
Sbjct:  253 HQCVRLARFENDRTISFIPPDGEFDLMTYRLSTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPSDVDSPSFKASIGTVVYLPDR 352
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BLAST of mRNA_Ecto-sp13_S_contig7667.18896.1 vs. uniprot
Match: A0A7S0XCY6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCY6_9STRA)

HSP 1 Score: 185 bits (469), Expect = 9.630e-58
Identity = 88/100 (88.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:    1 NRCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ 300
            ++CVRLARFENDRTISFIPPDGEF+LM+YRL T VKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVP DVDSP+FKASIG+V Y PD+
Sbjct:   12 HQCVRLARFENDRTISFIPPDGEFELMSYRLNTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPRDVDSPSFKASIGTVVYYPDK 111
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BLAST of mRNA_Ecto-sp13_S_contig7667.18896.1 vs. uniprot
Match: F0YHG2_AURAN (MHD domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHG2_AURAN)

HSP 1 Score: 191 bits (485), Expect = 1.900e-57
Identity = 89/100 (89.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:    1 NRCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ 300
            ++CVRLARFENDRTISFIPPDGEFDLMTYRL+THVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRS+ANNV+IIIPVP+DVDSP+FK+SIG+V YLPD+
Sbjct:  239 HQCVRLARFENDRTISFIPPDGEFDLMTYRLSTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSVANNVDIIIPVPHDVDSPSFKSSIGTVTYLPDR 338
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BLAST of mRNA_Ecto-sp13_S_contig7667.18896.1 vs. uniprot
Match: A0A7R9Z8F8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z8F8_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.120e-56
Identity = 85/100 (85.00%), Postives = 94/100 (94.00%), Query Frame = 1 
Query:    1 NRCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ 300
            ++CVRLARFENDRTISFIPPDGEFDLMTYRL THVKPLIWVEAVVEPH  SRIEYMIK +SQFKSRS+ANNVEIIIPVP DVDSP+FK+S+G+V YLPD+
Sbjct:    1 HQCVRLARFENDRTISFIPPDGEFDLMTYRLNTHVKPLIWVEAVVEPHKGSRIEYMIKTRSQFKSRSVANNVEIIIPVPPDVDSPSFKSSVGNVTYLPDR 100
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BLAST of mRNA_Ecto-sp13_S_contig7667.18896.1 vs. uniprot
Match: A0A6S8WNP8_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8WNP8_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.670e-56
Identity = 87/100 (87.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:    1 NRCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ 300
            ++CVRLARFENDRTISFIPPDGEFDLMTYRLTT VKPLIWVEAVVEPHSHSRIEYM+KAKSQFKSRS+AN+V+I+IPVP+DVDSP+FK+SIGSV+YLPD+
Sbjct:  229 HQCVRLARFENDRTISFIPPDGEFDLMTYRLTTQVKPLIWVEAVVEPHSHSRIEYMVKAKSQFKSRSVANSVDIVIPVPHDVDSPSFKSSIGSVSYLPDR 328
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BLAST of mRNA_Ecto-sp13_S_contig7667.18896.1 vs. uniprot
Match: A0A7S4A236_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A236_9STRA)

HSP 1 Score: 188 bits (478), Expect = 2.110e-56
Identity = 87/100 (87.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:    1 NRCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ 300
            ++CVRLARFENDRTISFIPPDGEFDLMTYRLTT VKPLIWVEAVVEPHSHSRIEYM+KAKSQFKSRS+AN+V+I+IPVP+DVDSP+FK+SIGSV+YLPD+
Sbjct:  239 HQCVRLARFENDRTISFIPPDGEFDLMTYRLTTQVKPLIWVEAVVEPHSHSRIEYMVKAKSQFKSRSVANSVDIVIPVPHDVDSPSFKSSIGSVSYLPDR 338
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BLAST of mRNA_Ecto-sp13_S_contig7667.18896.1 vs. uniprot
Match: F0YMC8_AURAN (MHD domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMC8_AURAN)

HSP 1 Score: 187 bits (476), Expect = 2.380e-56
Identity = 87/100 (87.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:    1 NRCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ 300
            ++CVRLARFENDRTISFIPPDGEFDLMTYRLTT VKPLIWVEAVVEPHSHSRIEYM+KAKSQFKSRS+AN V+I+IPVP+DVDSP+FK+SIGSV YLPD+
Sbjct:  215 HQCVRLARFENDRTISFIPPDGEFDLMTYRLTTQVKPLIWVEAVVEPHSHSRIEYMVKAKSQFKSRSVANGVDIVIPVPHDVDSPSFKSSIGSVTYLPDR 314
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BLAST of mRNA_Ecto-sp13_S_contig7667.18896.1 vs. uniprot
Match: W7U403_9STRA (Ap-1 complex subunit mu-1-like isoform 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U403_9STRA)

HSP 1 Score: 188 bits (478), Expect = 2.650e-56
Identity = 89/100 (89.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:    1 NRCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ 300
            ++CVRLARFENDRTISFIPPDGEFDLMTYRL+T VKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNV+IIIPVP+DVD+P+FKASIG+V YLPD+
Sbjct:  242 HQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDK 341
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7667.18896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE16_9PHAE4.610e-6298.00MHD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A812XMR1_SYMMI1.350e-5990.00AP1M1 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A8... [more]
A0A7S2R9Z0_9STRA2.370e-5892.00Hypothetical protein n=3 Tax=Dictyochophyceae TaxI... [more]
A0A7S0XCY6_9STRA9.630e-5888.00Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
F0YHG2_AURAN1.900e-5789.00MHD domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7R9Z8F8_9STRA1.120e-5685.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6S8WNP8_9STRA1.670e-5687.00Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S4A236_9STRA2.110e-5687.00Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
F0YMC8_AURAN2.380e-5687.00MHD domain-containing protein n=1 Tax=Aureococcus ... [more]
W7U403_9STRA2.650e-5689.00Ap-1 complex subunit mu-1-like isoform 1 n=2 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7667contigEcto-sp13_S_contig7667:993..1915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score204.1
Seed ortholog evalue3e-50
Seed eggNOG ortholog2880.D7FLA6
Model size300
KEGG koko:K12393
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000323,GO:0001775,GO:0002090,GO:0002092,GO:0002119,GO:0002164,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0005048,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0005886,GO:0005905,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006955,GO:0006970,GO:0006971,GO:0006996,GO:0007032,GO:0007034,GO:0007041,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009605,GO:0009628,GO:0009790,GO:0009791,GO:0009792,GO:0009893,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012510,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0021700,GO:0022607,GO:0030030,GO:0030031,GO:0030100,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030141,GO:0030154,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030667,GO:0030669,GO:0031090,GO:0031323,GO:0031325,GO:0031410,GO:0031982,GO:0031984,GO:0032438,GO:0032501,GO:0032502,GO:0032588,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033059,GO:0033218,GO:0033365,GO:0034613,GO:0035579,GO:0035646,GO:0036230,GO:0040025,GO:0042119,GO:0042277,GO:0042581,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043473,GO:0043476,GO:0043482,GO:0043485,GO:0043933,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044782,GO:0045055,GO:0045176,GO:0045184,GO:0045321,GO:0045334,GO:0045807,GO:0046903,GO:0046907,GO:0048002,GO:0048066,GO:0048259,GO:0048260,GO:0048475,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048731,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0050690,GO:0050750,GO:0050789,GO:0050794,GO:0050896,GO:0050931,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060271,GO:0060341,GO:0060627,GO:0061512,GO:0065003,GO:0065007,GO:0070325,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0097499,GO:0097500,GO:0097708,GO:0098588,GO:0098693,GO:0098791,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099503,GO:0120031,GO:0120036,GO:1900242,GO:1900244,GO:1903421,GO:1903423,GO:1903441,GO:1990778
Exons2
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0937@1,KOG0937@2759
Cds size300
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464036.9581914-CDS-Ecto-sp13_S_contig7667:992..11661681464036.9581914-CDS-Ecto-sp13_S_contig7667:992..1166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7667 993..1166 +
1681464036.9765685-CDS-Ecto-sp13_S_contig7667:1789..19151681464036.9765685-CDS-Ecto-sp13_S_contig7667:1789..1915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7667 1790..1915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7667.18896.1prot_Ecto-sp13_S_contig7667.18896.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7667 993..1915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7667.18896.1

>prot_Ecto-sp13_S_contig7667.18896.1 ID=prot_Ecto-sp13_S_contig7667.18896.1|Name=mRNA_Ecto-sp13_S_contig7667.18896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
NRCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSH
SRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQ
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mRNA from alignment at Ecto-sp13_S_contig7667:993..1915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7667.18896.1 ID=mRNA_Ecto-sp13_S_contig7667.18896.1|Name=mRNA_Ecto-sp13_S_contig7667.18896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=923bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7667:993..1915+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATAGGTGTGTGCGACTGGCTCGGTTCGAGAACGATCGTACGATCTCCTT
CATACCCCCCGACGGGGAGTTTGACCTGATGACCTACAGACTCACCACGC
ATGTGAAGCCGCTCATCTGGGTGGAGGCAGTCGTGGAGCCGCACTCGCAC
AGCAGGATAGAGTACATGATTAAGGTACGTACGTGTGGCATTGCACCACA
TCTCCCTGTTTTTTGTTCTTGTCTCGCAATATTCCTGGAAGAGGGTGATT
TTGTTTGGGGTATCGAAGTGCCGTGCGGCCTTCCTCCTCTCTCTGTGACA
TACCCTGGCTGATCTGCCCAGAACGTGCAAGTGAACCTTTGCCGAAAGGT
GTAAATATCAATACTGACGCCAAGAAAAATCTAGACCACACGCACACGGG
GTCCCACATCTTGTCATTGAGAAGCACTTGCTGTTTCAACCGCCCGGAGA
CTGGCGTCTTTTGATTGGTGAGCTGGTGGCGGCTGTCGATGCTACTAATA
AAGACATACACACACACTCACACACACGCACGTACGTTCGTGTTGGCTTG
CGAATTGAGTGAAGCGTTGTTGTTTGAGGGAATGGGGAGTCGGCACAGGT
CTGCCGTATGGAAACTGCGGCCGTTGGAAGCAGTGAGCTTCTTCTTGCTC
TACCGTTGGGGCGCTTGGTCAACAGTCTGCCTGCCGGCAACACATTTGAG
TCGCATGCCCAGTCGGATGGATGAGTCACACATAATCCTTTTCTCCTTCT
GGGCTCGTCTTTTAATTGCGACCTTTCTGTGCGTTGCGCGTGATTAGGCC
AAGAGCCAGTTCAAGTCGCGCTCTATCGCCAACAACGTCGAGATCATCAT
ACCCGTACCCAACGACGTGGACTCGCCTACCTTCAAGGCCTCAATCGGAA
GCGTGGCCTACCTACCCGACCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7667:993..1915+

>mRNA_Ecto-sp13_S_contig7667.18896.1 ID=mRNA_Ecto-sp13_S_contig7667.18896.1|Name=mRNA_Ecto-sp13_S_contig7667.18896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7667:993..1915+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATAGGTGTGTGCGACTGGCTCGGTTCGAGAACGATCGTACGATCTCCTT
CATACCCCCCGACGGGGAGTTTGACCTGATGACCTACAGACTCACCACGC
ATGTGAAGCCGCTCATCTGGGTGGAGGCAGTCGTGGAGCCGCACTCGCAC
AGCAGGATAGAGTACATGATTAAGGCCAAGAGCCAGTTCAAGTCGCGCTC
TATCGCCAACAACGTCGAGATCATCATACCCGTACCCAACGACGTGGACT
CGCCTACCTTCAAGGCCTCAATCGGAAGCGTGGCCTACCTACCCGACCAG
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