mRNA_Ecto-sp13_S_contig7665.18893.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7665.18893.1
Unique NamemRNA_Ecto-sp13_S_contig7665.18893.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7665.18893.1 vs. uniprot
Match: D8LHT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT4_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 1.890e-120
Identity = 166/178 (93.26%), Postives = 172/178 (96.63%), Query Frame = 1
Query:    1 DQWCGGQSHPDPLTSRLLDFAREDWMCKAMLQLSFASYCPPGAFCEQDMVDNPPTHLNGVQDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGGEAVNPGPQSGEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVWKNGGTSLARESKKLRSY 534
            ++WCGG SHPDPLTSRLLDFAREDWMCKAM QLSFASYCPPGAFCE DMV+ PPTHLNGV+DWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGG EAVNPGP+S EREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVWKNGGTSLARES+KLRSY
Sbjct:  131 NKWCGGHSHPDPLTSRLLDFAREDWMCKAMFQLSFASYCPPGAFCEHDMVEEPPTHLNGVEDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGEEAVNPGPKSSEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVWKNGGTSLARESEKLRSY 308          
BLAST of mRNA_Ecto-sp13_S_contig7665.18893.1 vs. uniprot
Match: A0A6H5K0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M4_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 6.510e-48
Identity = 77/161 (47.83%), Postives = 106/161 (65.84%), Query Frame = 1
Query:    4 QWCGGQSHPDPLTSRLLDFAREDWMCKAMLQLSFASYCPPGAFCEQDMVDNPPT-HLNGVQDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGGEAVNPGPQSGEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVW 483
            +WCG + HP P T RLLDFA+E W  +A  Q++F  YCPP  FCE+  VD+P      G+ D  +L   +D+L  YTAVGI E W+LS++LF+A + SPV++W   +  NPG  +  R+ +L+WAH SP I + +G D+LLY   LSIFK+QT  +LGT W
Sbjct:   95 KWCGHEEHPVPATERLLDFAQESWRNQAFKQMTFGLYCPPDTFCEEAEVDSPQMLDEPGILD--VLQQVQDILAGYTAVGIMEHWDLSIQLFNARVRSPVREWNVSKQRNPGVMTRLRDEVLQWAHKSPAIHRVIGTDMLLYSFGLSIFKQQTTASLGTNW 253          
BLAST of mRNA_Ecto-sp13_S_contig7665.18893.1 vs. uniprot
Match: A0A6H5JUF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF0_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 6.850e-47
Identity = 79/181 (43.65%), Postives = 106/181 (58.56%), Query Frame = 1
Query:    4 QWCGGQSHPDPLTSRLLDFAREDWMCKAMLQLSFASYCPPGAFCEQDMVDN---------------------PPTHLNGVQDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGGEAVNPGPQSGEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVW 483
            +WCG + HP P T RLLDFA+E W  +A  Q++F  YCPP  FCE   V+N                     PP  L+      +L   +D+L  YTAVGI E W+LSM+LF+A + SPV++W   +  NPG  +G R+ +L+WAH SP I + +G D+LLY   LSIFK+QT  +LGT W
Sbjct:   46 KWCGHEEHPVPATERLLDFAQESWRNQAFKQMTFGLYCPPDTFCEVAEVNNVSQCETFVVGVGSLDGLREVGPPQMLDEPGILDVLQQVQDILAGYTAVGIMEHWDLSMQLFNARVRSPVREWNVFKQRNPGVMTGLRDEVLQWAHKSPAIHRVIGTDMLLYSFGLSIFKQQTTASLGTNW 226          
BLAST of mRNA_Ecto-sp13_S_contig7665.18893.1 vs. uniprot
Match: D7G5K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.140e-46
Identity = 78/160 (48.75%), Postives = 105/160 (65.62%), Query Frame = 1
Query:    4 QWCGGQSHPDPLTSRLLDFAREDWMCKAMLQLSFASYCPPGAFCEQDMVDNPPTHLNGVQDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGGEAVNPGPQSGEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVW 483
            +WCG   HP P T RLLDFA+E W  KA  Q++F  YCPP  FC++  V++P   L+      +L   ++ L  YTAVGI E W+LSM+LF+A + SPV++W   +  NPG  SG R+ +L+WAH SP I + +G D+LLY  ALSIFK+QT  +LGT W
Sbjct:  250 KWCGHAEHPVPATERLLDFAQESWQNKAFKQMTFGLYCPPDTFCDEAEVESPQM-LDEPGMLDILQQVQNTLAGYTAVGIMEHWDLSMQLFNARVRSPVREWNMFKQRNPGVMSGLRDEVLQWAHESPAIHRVIGTDMLLYYFALSIFKQQTTASLGTNW 408          
BLAST of mRNA_Ecto-sp13_S_contig7665.18893.1 vs. uniprot
Match: A0A6H5JT32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT32_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 3.420e-44
Identity = 77/162 (47.53%), Postives = 106/162 (65.43%), Query Frame = 1
Query:    4 QWCGGQSHPDPLTSRLLDFAREDWMCKAMLQLSFASYCPPGAFCEQ-DMVDNPPTHLNGVQDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGGEAVNPGPQSGEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVWK 486
            +WCG  + P P+T RL++FA+  W  KA  Q++F  YCPP AFCEQ +       H  G   W LL   E +L +YTAVGI E W+LSM+LF+A ++SPV  W   E  N G +SG R+ + RWAH SPEI + +  D+LLYD ++S+FK QT+ +LGT+W+
Sbjct:  231 KWCGYANDPQPVTDRLVEFAKYGWKNKAFRQMTFGLYCPPNAFCEQAEPGAQQAVHEPG--GWILLEQIEAILATYTAVGILEYWDLSMQLFNARVTSPVWDWEDMEHSNRGQRSGLRDEVHRWAHMSPEIHRVMATDMLLYDYSVSVFKLQTSASLGTIWE 390          
BLAST of mRNA_Ecto-sp13_S_contig7665.18893.1 vs. uniprot
Match: A0A6H5L5I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I1_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 8.190e-44
Identity = 77/165 (46.67%), Postives = 102/165 (61.82%), Query Frame = 1
Query:    4 QWCGGQSHPDPLTSRLLDFAREDWMCKAMLQLSFASYCPPGAFCEQDMVDNPPTHLNGVQDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGGEAVNPGPQSGEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVWKNGGT 498
            +WCG   HP P T RLLD+A++ W   A  Q++F  YCP G  CE   V   P  L+      +L   ED+L  YTAVGI E W+LSM+LF+A + SPV++W   +  N G  S  R+ +L+WAH SP + + +  D+LLY  ALSIFKRQT EALGT W +G +
Sbjct:  147 KWCGYADHPLPATDRLLDYAQQYWKNMAYKQMAFGMYCPHGLICEATEVRTAPG-LDEPHGLDVLQKVEDILSRYTAVGIMEHWDLSMQLFNARVRSPVREWNITQHSNAGLPSELRDEVLQWAHDSPVVHRLIATDMLLYSFALSIFKRQTTEALGTNWLDGSS 310          
BLAST of mRNA_Ecto-sp13_S_contig7665.18893.1 vs. uniprot
Match: A0A6H5JT23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT23_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.560e-42
Identity = 77/165 (46.67%), Postives = 99/165 (60.00%), Query Frame = 1
Query:    4 QWCGGQSHPDPLTSRLLDFAREDWMCKAMLQLSFASYCPPGAFCEQDMVDNPPTHLNGVQDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGGEAVNPGPQSGEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVWKNGGT 498
            +WCG    P P T RLL+FA++ W   A  Q++F  YCP G  CE   V+  P  L+      +L   ED+L  YTAVGI E W+LSM+LF+A + SPV+ W      N G  S  R+ +L+WAH SP I + +  DLLLY  ALSIFKRQT E+LGT W  G +
Sbjct:  147 KWCGYADDPLPATDRLLEFAQQHWKNMAYKQMTFGMYCPHGLICEATEVETAPG-LDEPHGLDVLQKVEDILSGYTAVGIMEHWDLSMQLFNARVRSPVRDWNMTVRSNAGLPSELRDEVLQWAHDSPVIHRLMATDLLLYSFALSIFKRQTTESLGTNWLGGSS 310          
BLAST of mRNA_Ecto-sp13_S_contig7665.18893.1 vs. uniprot
Match: D7FUF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF7_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 6.140e-38
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = 1
Query:   73 WMCKAMLQLSFASYCPPGAFCEQDMVDNPPTHLNGVQDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGGEAVNPGPQSGEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVWK 486
            W   A  Q+++  YCPP A C +  +D P   ++      LL   ED+L  Y AVGI E W LSMELF+A + SPV++W   +  NPG  SG R+ +L+WAH +P I + +G D+LLY  ALSIFK+QTAEALGT W+
Sbjct:    2 WQNLAFKQMTYGLYCPPEAICGEMQLDAPQM-VDEPGGLDLLQQVEDILAGYAAVGIMEHWGLSMELFNARVRSPVREWNRFKQKNPGVTSGLRDQVLQWAHENPAIHRVLGADMLLYSFALSIFKQQTAEALGTNWR 138          
BLAST of mRNA_Ecto-sp13_S_contig7665.18893.1 vs. uniprot
Match: A0A6H5K2F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 8.070e-28
Identity = 51/95 (53.68%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  208 EDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGGEAVNPGPQSGEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVWKNG 492
            +D+L  YTAVGI E W+LSM+LF+A + SPV++W     +N G  SG R  +L+WAH SP I + +G D+LLY  ALSIFK QT E LGT W  G
Sbjct:   12 QDILAGYTAVGIVEYWDLSMQLFNARVRSPVREWNSTLHINAGKPSGLRAEVLQWAHDSPAIHRQLGTDMLLYSFALSIFKDQTTETLGTNWLEG 106          
BLAST of mRNA_Ecto-sp13_S_contig7665.18893.1 vs. uniprot
Match: A0A6H5KCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.510e-24
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1
Query:  214 VLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGGEAVNPGPQSGEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVW 483
            +L  Y A+GI E W LSM+LF+A + SPV+ W     VNPG  SG R+ +L+WAH SP I  A+  D+LLY  ALSIFK+Q  +ALGT W
Sbjct:   91 ILAGYRAIGIMEHWGLSMQLFNARVRSPVRDWNVSTHVNPGGGSGIRDEVLQWAHQSPAIHDALRTDMLLYSFALSIFKQQATDALGTDW 180          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7665.18893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LHT4_ECTSI1.890e-12093.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K0M4_9PHAE6.510e-4847.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUF0_9PHAE6.850e-4743.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5K0_ECTSI2.140e-4648.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT32_9PHAE3.420e-4447.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5I1_9PHAE8.190e-4446.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT23_9PHAE2.560e-4246.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUF7_ECTSI6.140e-3847.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2F9_9PHAE8.070e-2853.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCY2_9PHAE1.510e-2453.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7665contigEcto-sp13_S_contig7665:6524..7238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size540
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000370.1
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464036.8273118-CDS-Ecto-sp13_S_contig7665:6523..68531681464036.8273118-CDS-Ecto-sp13_S_contig7665:6523..6853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7665 6524..6853 -
1681464036.8396504-CDS-Ecto-sp13_S_contig7665:7028..72381681464036.8396504-CDS-Ecto-sp13_S_contig7665:7028..7238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7665 7029..7238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7665.18893.1prot_Ecto-sp13_S_contig7665.18893.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7665 6524..7238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7665.18893.1

>prot_Ecto-sp13_S_contig7665.18893.1 ID=prot_Ecto-sp13_S_contig7665.18893.1|Name=mRNA_Ecto-sp13_S_contig7665.18893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
DQWCGGQSHPDPLTSRLLDFAREDWMCKAMLQLSFASYCPPGAFCEQDMV
DNPPTHLNGVQDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPV
QQWGGGEAVNPGPQSGEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFK
RQTAEALGTVWKNGGTSLARESKKLRSYY*
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mRNA from alignment at Ecto-sp13_S_contig7665:6524..7238-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7665.18893.1 ID=mRNA_Ecto-sp13_S_contig7665.18893.1|Name=mRNA_Ecto-sp13_S_contig7665.18893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=715bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7665:6524..7238- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCAGTGGTGTGGGGGCCAAAGCCACCCGGACCCGTTAACATCTCGGCT GCTAGACTTCGCGAGGGAGGACTGGATGTGCAAGGCTATGCTCCAGCTCA GCTTCGCCTCTTACTGCCCCCCCGGCGCCTTCTGCGAGCAGGATATGGTC GACAACCCACCGACGCATCTCAACGGCGTTCAAGACTGGAGTCTGCTGGC CGTCGCAGAGGTGCGGGCGGTTACAGTACACGTTTTATTTTTCTCTCAAA ACCGCATGTACACACCCGACCAAAGACGGTTGACCTTTCAGTGACTTCAG GTCTCCTTGCGGCCGGCGTACTGTAAGGATGTACTCACGACGTCACCTTG CACCATTCGTTTACCTCCCTCCCTAACCAAAGCAGGACGTCCTTCTGAGC TACACCGCTGTGGGGATTTTCGAGGAGTGGGAGCTGTCGATGGAGCTGTT CGACGCCGTAATCAGCAGCCCGGTGCAGCAGTGGGGAGGCGGGGAGGCCG TCAACCCGGGCCCTCAGTCGGGCGAGCGAGAGATGCTGCTTCGGTGGGCG CATAGCTCTCCGGAGATCAGGCAGGCCGTGGGGGGAGACCTCCTGCTGTA CGACCTAGCGCTGTCGATCTTCAAGAGGCAGACCGCGGAGGCGCTGGGGA CGGTCTGGAAGAACGGCGGCACGAGCCTAGCGAGGGAATCGAAAAAACTT CGATCGTACTACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7665:6524..7238-

>mRNA_Ecto-sp13_S_contig7665.18893.1 ID=mRNA_Ecto-sp13_S_contig7665.18893.1|Name=mRNA_Ecto-sp13_S_contig7665.18893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7665:6524..7238- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCAGTGGTGTGGGGGCCAAAGCCACCCGGACCCGTTAACATCTCGGCT
GCTAGACTTCGCGAGGGAGGACTGGATGTGCAAGGCTATGCTCCAGCTCA
GCTTCGCCTCTTACTGCCCCCCCGGCGCCTTCTGCGAGCAGGATATGGTC
GACAACCCACCGACGCATCTCAACGGCGTTCAAGACTGGAGTCTGCTGGC
CGTCGCAGAGGACGTCCTTCTGAGCTACACCGCTGTGGGGATTTTCGAGG
AGTGGGAGCTGTCGATGGAGCTGTTCGACGCCGTAATCAGCAGCCCGGTG
CAGCAGTGGGGAGGCGGGGAGGCCGTCAACCCGGGCCCTCAGTCGGGCGA
GCGAGAGATGCTGCTTCGGTGGGCGCATAGCTCTCCGGAGATCAGGCAGG
CCGTGGGGGGAGACCTCCTGCTGTACGACCTAGCGCTGTCGATCTTCAAG
AGGCAGACCGCGGAGGCGCTGGGGACGGTCTGGAAGAACGGCGGCACGAG
CCTAGCGAGGGAATCGAAAAAACTTCGATCGTACTACTGA
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