mRNA_Ecto-sp13_S_contig7662.18891.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7662.18891.1
Unique NamemRNA_Ecto-sp13_S_contig7662.18891.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7662.18891.1 vs. uniprot
Match: D7FKT5_ECTSI (Alpha-L-fucosidase, family GH95 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT5_ECTSI)

HSP 1 Score: 931 bits (2406), Expect = 0.000e+0
Identity = 484/580 (83.45%), Postives = 504/580 (86.90%), Query Frame = 1 
Query:    1 TGVVRDEEDTTIPKPRYGKQLPPPPVQCCPDAPTEPPAGVHALDLWDDEPGSDWTTSYALGNGYLGAMLGMGTFKDTMFMSHGSLWSGKGKVKAGRATSGFPLSPDRYDKFRSARESLLDGDVHAAQEAAGRMPTSPEGFVGSFEYAGELLLEFGEGGGQQAGGEREKGAVDEYIRHLHLNNGTAEATFSSKGPPDSGGLXXXXXXXXXXXRRKRRLVHRREAFASNVDGVLAMRLSCKEEESGRGCLSLVATPKRQGKSHFTEGGRLPXXXXXXDQRHENGGAGVDTAGWGAGAYVGLYRPSGRNGEKAEMGFHVCVAVFPSVGEGSGVVAEEYVDPSSPRQRHRPEGPAGDKETQEQELMMARLADAPGGPPARNAGVMXXXXXXXXGGGPAQGNTGQAPPTRNPTPRHRIALSAAEASSEAMMLVSVVTEEKARDDDGNDETEGLRRRCLGRLEAAVGLGFEELRRRHVEDVEGLFDRVHFSLGPSGAGGXXXXXXRRLNGXXXGVXXXGSLSRSRSCVAGLPIRTRVARSGKACTEERGEGEGIVRHGPENGGGGGLAERTVVDDGLVELMYHYGR 1740
            +GVVRDEED TIPKPRYGK+         PDA  EPPAGVHALD+WDDEPG+DWTTSYALGNGYLGAMLGMGTFKDTMFMSHGSLW+GKGK+KAG ATSGFPLSPDRYDKFRSARESLLDGDVHAAQEAAGRMPTSPEGFVGSFEYAGEL LEFGEGGGQQAGGERE+G VD YIRHLHLNNGTAEATFSSKGPPDSGG            +R+RRLVH REAFASNVDGVLAMRLSCKEEESGRGCLSLVATPKRQGKSHFT  GRLPXXXXXX        AG DT GWGAGAYVGLYRPSGRNGEKAEMGFHVCVAVFPSVGEGSGVV EEYVDPSSPR+RHRPEGPAGDKET E++LMMARLADAPGGPPARNAG+M         GGP+QGN GQAPPTRNPTPRHRIALSAAEASSEAMMLVSVVTEEKARDDDG+DETEGLRRRCL R+EAA GLGFEELRRRHVEDVEGLFDRVHFSLGPS  GG      RRLNG   GV    S+S SRSCVAGLPIRTRVARSGKACTE+ GEG GI   GP+NGGGGGLAERT+VDDGLVELMYHYGR
Sbjct:  214 SGVVRDEEDKTIPKPRYGKEPXXXXXXXXPDAAAEPPAGVHALDVWDDEPGADWTTSYALGNGYLGAMLGMGTFKDTMFMSHGSLWAGKGKLKAGGATSGFPLSPDRYDKFRSARESLLDGDVHAAQEAAGRMPTSPEGFVGSFEYAGELHLEFGEGGGQQAGGEREEGPVDGYIRHLHLNNGTAEATFSSKGPPDSGGFGLGLGFGASRGQRERRLVHHREAFASNVDGVLAMRLSCKEEESGRGCLSLVATPKRQGKSHFTTAGRLPXXXXXXXXXXXXXXAGGDTVGWGAGAYVGLYRPSGRNGEKAEMGFHVCVAVFPSVGEGSGVVTEEYVDPSSPRERHRPEGPAGDKETPEEKLMMARLADAPGGPPARNAGMMARLAEGPSRGGPSQGNAGQAPPTRNPTPRHRIALSAAEASSEAMMLVSVVTEEKARDDDGDDETEGLRRRCLARVEAAAGLGFEELRRRHVEDVEGLFDRVHFSLGPSVPGGGAAGGERRLNGGDSGVGDRESISPSRSCVAGLPIRTRVARSGKACTEKGGEGAGITGQGPDNGGGGGLAERTIVDDGLVELMYHYGR 793
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BLAST of mRNA_Ecto-sp13_S_contig7662.18891.1 vs. uniprot
Match: A0A6H5K8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P7_9PHAE)

HSP 1 Score: 493 bits (1270), Expect = 2.420e-160
Identity = 275/330 (83.33%), Postives = 285/330 (86.36%), Query Frame = 1 
Query:  751 VATPKRQGKSHFTEGGRLPXXXXXXDQRHENGGAGVDTAGWGAGAYVGLYRPSGRNGEKAEMGFHVCVAVFPSVGEGSGVVAEEYVDPSSPRQRHRPEGPAGDKETQEQELMMARLADAPGGPPARNAGVMXXXXXXXXGGGPAQGNTGQAPPTRNPTPRHRIALSAAEASSEAMMLVSVVTEEKARDDDGNDETEGLRRRCLGRLEAAVGLGFEELRRRHVEDVEGLFDRVHFSLGPSGAGGXXXXXXRRLNGXXXGVXXXGSLSRSRSCVAGLPIRTRVARSGKACTEERGEGEGIVRHGPENGGGGGLAERTVVDDGLVELMYHYGR 1740
            VATP RQGKSHFTEGGRLPXXXXXX        AG DTAGWGAGAYVGLYRPSGRNGEKAEMGFHVCVAVFPSVGEGS VVAEEYVDPSSPRQRHRPEGPAGD+ET E++LMMARLADAPGG PARN G+ XXXXXXXX GGPAQGN GQAPPTRNPTPRHRI+LSAAEASSEAMMLVSVVTEEKARD+DGNDETEGLRRRCLGR+EAA GLGFEELRRRHVEDVEGLFDRVH SLGP    G      RRL+G   GV    SLSRSRSCVAGLPIRTRVAR+GKACTE  GEG GI   G +N GGGG AERTVVDDGLVELMYHYGR
Sbjct:   43 VATPNRQGKSHFTEGGRLPXXXXXXXXXXXXXXAGGDTAGWGAGAYVGLYRPSGRNGEKAEMGFHVCVAVFPSVGEGSRVVAEEYVDPSSPRQRHRPEGPAGDEETPEEKLMMARLADAPGGAPARNVGMXXXXXXXXXXGGPAQGNAGQAPPTRNPTPRHRISLSAAEASSEAMMLVSVVTEEKARDNDGNDETEGLRRRCLGRVEAAAGLGFEELRRRHVEDVEGLFDRVHLSLGPIVPDGGAAGGERRLDGGDNGVEGGESLSRSRSCVAGLPIRTRVARAGKACTEGGGEGAGITGQGLDNEGGGGRAERTVVDDGLVELMYHYGR 372
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BLAST of mRNA_Ecto-sp13_S_contig7662.18891.1 vs. uniprot
Match: A0A6H5K0Q6_9PHAE (GH95 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q6_9PHAE)

HSP 1 Score: 438 bits (1127), Expect = 3.420e-147
Identity = 228/250 (91.20%), Postives = 232/250 (92.80%), Query Frame = 1 
Query:    1 TGVVRDEEDTTIPKPRYGKQLPPPPVQCCPDAPTEPPAGVHALDLWDDEPGSDWTTSYALGNGYLGAMLGMGTFKDTMFMSHGSLWSGKGKVKAGRATSGFPLSPDRYDKFRSARESLLDGDVHAAQEAAGRMPTSPEGFVGSFEYAGELLLEFGEGGGQQAGGEREKGAVDEYIRHLHLNNGTAEATFSSKGPPDSGGLXXXXXXXXXXXRRKR--RLVHRREAFASNVDGVLAMRLSCKEEESGRGCL 744
            +GVVRDEEDTTIPKPRYGK+ PPPP+QCCPDA  EPPAGVHALDLWDDEPGSDWTTSYALGNGYLGAMLGM TFKDTMFMSHGSLWSGKGK KAG AT  FPLSPDRYDKFRSARESLLDGDVHAAQEAAGRMPTSPEGFVGSFEYAGELLLEFGEGGGQQAGGEREKG VD YIRHLHLNNGTAEATFSSKGPPDSGG   XXXXXXX  R +R  RLVHRREAFASNVDGVLAMRLSCKEEESGRGCL
Sbjct:  135 SGVVRDEEDTTIPKPRYGKEPPPPPLQCCPDAAGEPPAGVHALDLWDDEPGSDWTTSYALGNGYLGAMLGMRTFKDTMFMSHGSLWSGKGKHKAGGATFDFPLSPDRYDKFRSARESLLDGDVHAAQEAAGRMPTSPEGFVGSFEYAGELLLEFGEGGGQQAGGEREKGPVDGYIRHLHLNNGTAEATFSSKGPPDSGGFGLXXXXXXXTSRGQREGRLVHRREAFASNVDGVLAMRLSCKEEESGRGCL 384
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BLAST of mRNA_Ecto-sp13_S_contig7662.18891.1 vs. uniprot
Match: A0A0Q4RF87_9BACL (Alpha-L-fucosidase n=3 Tax=Paenibacillus TaxID=44249 RepID=A0A0Q4RF87_9BACL)

HSP 1 Score: 62.8 bits (151), Expect = 1.430e-6
Identity = 52/199 (26.13%), Postives = 83/199 (41.71%), Query Frame = 1 
Query:  133 LWDDEPGSDWTTSYALGNGYLGAMLGMGTFKDTMFMSHGSLWSGKGKVKAGRATSGFPLSPDRYDKFRSARESLLDGDVHAAQEAAGRMPTSPEGFVGSFEYAGELLLEFGEGGGQQAGGEREKGAVDEYIRHLHLNNGTAEATFSSKGPPDSGGLXXXXXXXXXXXRRKRRLVHRREAFASNVDGVLAMRLSCKEEES 729
            LW D PG DW     +GNG +GA++  G+ ++T  M+  + WSGK +  AG       L+          RE+   GD +     A       +   G+     +++L FG                ++ IR L +   TA  ++SS+G   +                       REAFA+NVDG++A R + ++ ES
Sbjct:    6 LWYDGPGEDWKQGLPIGNGRIGAVIYGGSERETWCMTELTYWSGKKERIAGNGGGKAGLN--------RMREAFYRGDYNEGDRLAKEQLQPKKQNFGTNLSVCDMVLRFGH-------------QSEDIIRELDVEQATAAMSYSSEGQTFT-----------------------REAFATNVDGIVAARFAGEQAES 160
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BLAST of mRNA_Ecto-sp13_S_contig7662.18891.1 vs. uniprot
Match: A0A285QCE8_9SPHN (Alpha-L-fucosidase 2 n=1 Tax=Sphingomonas guangdongensis TaxID=1141890 RepID=A0A285QCE8_9SPHN)

HSP 1 Score: 60.5 bits (145), Expect = 7.530e-6
Identity = 54/199 (27.14%), Postives = 83/199 (41.71%), Query Frame = 1 
Query:  118 VHALDLWDDEPGSDWTTSYALGNGYLGAMLGMGTFKDTMFMSHGSLWSGKGKVKAGRATSGFPLSPDRYDKFRSARESLLDGDVHAAQEAAGRMPTSPEGFVGSFEYAGELLLEFGEGGGQQAGGEREKGAVDEYIRHLHLNNGTAEATFSSKGPPDSGGLXXXXXXXXXXXRRKRRLVHRREAFASNVDGVLAMRLSC 714
              A  LW  +P   W  +  +GNG LGAM+  G   + + ++H   W+G+            P++P   +     R+ +LDG +  A   A             ++ AG LL+        +  G  +  A + Y R L L+   A A+F++ G                  RR     +RRE FAS+VD VL +RLSC
Sbjct:   34 ADAPRLWYRQPARMWLEALPVGNGMLGAMVSGGVRDELLQLNHHGWWAGQPY---------HPVNPAAREALPRVRQLILDGRIKEAHTLADAALVGRPASQMPYQTAGALLV--------RLTGVNDNDA-ESYERDLDLDGALASASFTAGG------------------RR-----YRREVFASHVDRVLVVRLSC 191
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BLAST of mRNA_Ecto-sp13_S_contig7662.18891.1 vs. uniprot
Match: UPI0010BFC3F4 (glycoside hydrolase family 95 protein n=1 Tax=Paenibacillus sp. SY21-1 TaxID=2562315 RepID=UPI0010BFC3F4)

HSP 1 Score: 60.1 bits (144), Expect = 9.980e-6
Identity = 53/199 (26.63%), Postives = 79/199 (39.70%), Query Frame = 1 
Query:  133 LWDDEPGSDWTTSYALGNGYLGAMLGMGTFKDTMFMSHGSLWSGKGKVKAGRATSGFPLSPDRYDKFRSARESLLDGDVHAAQEAAGRMPTSPEGFVGSFEYAGELLLEFGEGGGQQAGGEREKGAVDEYIRHLHLNNGTAEATFSSKGPPDSGGLXXXXXXXXXXXRRKRRLVHRREAFASNVDGVLAMRLSCKEEES 729
            LW +  G +W     +GNG +GA++  G  ++T  ++  + WSGK +  AG       L        +  RE+   GD +     A      P+   G+     +++L FG  G              + +R L L   TA  T+S    PD                   R  H RE  ASNVDGV+A R+S  +  S
Sbjct:    6 LWYNGRGENWKQGLPIGNGRIGAVVYGGGEQETWCITELTYWSGKTERIAGNGAGKAGL--------QRMREAFFRGDYNEGDRLAKEQLQPPKRNFGTNLSVCDVVLHFGHSG-------------TDVVRELDLEQATASMTYSV---PDQRSSVHDAAGFAGGQAGAPRTRHAREVLASNVDGVIAARMSADQAGS 180
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BLAST of mRNA_Ecto-sp13_S_contig7662.18891.1 vs. uniprot
Match: A0A518RKP2_9SPHN (Glycoside hydrolase family 95 protein n=2 Tax=Sphingomonas suaedae TaxID=2599297 RepID=A0A518RKP2_9SPHN)

HSP 1 Score: 58.9 bits (141), Expect = 2.250e-5
Identity = 56/199 (28.14%), Postives = 91/199 (45.73%), Query Frame = 1 
Query:  121 HALDLWDDEPGSDWTTSYALGNGYLGAMLGMGTFKDTMFMSHGSLWSGKGKVKAGRATSGFPLSPDRYDKFRSARESLLDGDVHAAQEAAG--RMPTSPEGFVGSFEYAGELLLEFGEGGGQQAGGEREKGAVDEYIRHLHLNNGTAEATFSSKGPPDSGGLXXXXXXXXXXXRRKRRLVHRREAFASNVDGVLAMRLS 711
            +A  LW  +P ++WT +  +GNG +GAM+  G  ++ + ++  SLW+G G           P++P         R  +  G ++A  EA    R+  +P   + +++  G+LLL+   G  Q        GAV +Y R L L++  A   F+  G                       + HRREAFAS  D V+A+RL+
Sbjct:   28 NASRLWYRQPAAEWTQALPIGNGRIGAMIFGGVARERLQLNEDSLWTG-GPYD--------PVNPAARAALPEVRRLIAAG-LYAEAEALADSRLIGTPRTQM-AYQALGDLLLDL-PGAAQ--------GAVTDYRRELDLDSAIASVEFTLGG-----------------------VRHRREAFASAPDDVIAVRLT 183
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BLAST of mRNA_Ecto-sp13_S_contig7662.18891.1 vs. uniprot
Match: W3WZB5_PESFW (Glyco_hyd_65N_2 domain-containing protein n=1 Tax=Pestalotiopsis fici (strain W106-1 / CGMCC3.15140) TaxID=1229662 RepID=W3WZB5_PESFW)

HSP 1 Score: 58.9 bits (141), Expect = 2.280e-5
Identity = 58/228 (25.44%), Postives = 99/228 (43.42%), Query Frame = 1 
Query:  118 VHALD----LWDDEPGSDWTTSYALGNGYLGAMLGMGTFKDTMFMSHGSLWSGKGKVKAGRATSGFPLSPDRYDKFRSARESLLDGDVHAAQ----EAAGRMPTSPEGFVGSFEYAGELLLEFGEGGGQQAGGEREKGAVDEYIRHLHLNNGTAEATFSSKGPPDSGGLXXXXXXXXXXXRRKRRLVHRREAFASNVDGVLAMRLSCKEEESGRGCLSL-VATPKRQG 774
            VH  D    LW DEPG+D++T  A+GNG +GA++  G+  + + ++  S+WSG+ + +   A+          + F   RE + DG++  A     E    +PT+      ++    +L+L+FG            +G  + Y R L   +G    ++   G                       + + RE  A    GV+A+RL+  +E    G LS+ VA  + QG
Sbjct:   18 VHGYDASRHLWYDEPGADFSTGLAIGNGRIGALV-YGSDTEKITLNENSVWSGEFQDRINNAS---------LEAFPKVRELIADGNLTDAGQLVLEDMSGIPTTNR----AYSVTNDLILDFG----------HSEGDWENYERWLDTLDGNVGVSYDYNG-----------------------VTYSREVIAQFPSGVVAVRLNASQE----GALSVNVALSRSQG 194
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BLAST of mRNA_Ecto-sp13_S_contig7662.18891.1 vs. uniprot
Match: A0A2A5YQP7_9SPHN (Glyco_hyd_65N_2 domain-containing protein n=1 Tax=Sphingomonadaceae bacterium MED-G03 TaxID=1986231 RepID=A0A2A5YQP7_9SPHN)

HSP 1 Score: 58.5 bits (140), Expect = 2.970e-5
Identity = 48/200 (24.00%), Postives = 79/200 (39.50%), Query Frame = 1 
Query:  121 HALDLWDDEPGSDWTTSYALGNGYLGAMLGMGTFKDTMFMSHGSLWSGKGKVKAGRATSGFPLSPDRYDKFRSARESLLDGDVHAAQEAAGRMPTSPEGFVGSFEYAGELLLEFGEGGGQQAGGEREKGAVDEYIRHLHLNNGTAEATFSSKGPPDSGGLXXXXXXXXXXXRRKRRLVHRREAFASNVDGVLAMRLSCKE 720
            H L LW  +P   WT +  +GNG LGAM+  G  ++ + ++  +LW G+            P++P+        R  + +G +  A+  A     +       ++  G+L+LEF         G R+      Y R L L+       F + G                         H R+A AS +D ++A+RLS  E
Sbjct:   32 HPLTLWYRQPARTWTQALPIGNGKLGAMVFGGVHRERLQLNESTLWGGQPYD---------PVNPEALQNLADVRRLIFEGRIAEAEALANETMMARPLTQMPYQTFGDLILEFP--------GVRD---FSSYHRELDLDTAMTTTRFIADGAR-----------------------HVRQAVASPIDNIIAIRLSTSE 188
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BLAST of mRNA_Ecto-sp13_S_contig7662.18891.1 vs. uniprot
Match: M0CLQ5_9EURY (Alpha-L-fucosidase n=1 Tax=Halosimplex carlsbadense 2-9-1 TaxID=797114 RepID=M0CLQ5_9EURY)

HSP 1 Score: 57.0 bits (136), Expect = 9.150e-5
Identity = 52/201 (25.87%), Postives = 74/201 (36.82%), Query Frame = 1 
Query:  118 VHALDLWDDEPGSDWTTSYALGNGYLGAMLGMGTFKDTMFMSHGSLWSGKGKVKAGRATSGFPLSPDRYDKFRSARESLLDGDVHAAQEAAGRMPTSPEGFVGSFEYAGELLLEFGEGGGQQAGGEREKGAVDEYIRHLHLNNGTAEATFSSKGPPDSGGLXXXXXXXXXXXRRKRRLVHRREAFASNVDGVLAMRLSCKE 720
             H   LW D P ++W  +  +GNG LG M+     ++ + ++   LW G     A R   G P      D   + RE L DG+   AQ     +       V  ++  G+LL++                  DEY R L L  G +   ++  G                           RE FAS  DGVLAMR+   E
Sbjct:   20 THDDRLWYDAPATEWVEALPVGNGRLGGMVHGRPARERVALNDDRLWVGD---HADRTADGGP------DDLDAVRECLWDGEFERAQRLCNELFVGDLTGVAPYQPLGDLLIDC-----------PAHDDPDEYRRSLDLRAGVSRVEYTVGGTR-----------------------FERECFASEPDGVLAMRIEADE 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7662.18891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FKT5_ECTSI0.000e+083.45Alpha-L-fucosidase, family GH95 n=1 Tax=Ectocarpus... [more]
A0A6H5K8P7_9PHAE2.420e-16083.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0Q6_9PHAE3.420e-14791.20GH95 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A0Q4RF87_9BACL1.430e-626.13Alpha-L-fucosidase n=3 Tax=Paenibacillus TaxID=442... [more]
A0A285QCE8_9SPHN7.530e-627.14Alpha-L-fucosidase 2 n=1 Tax=Sphingomonas guangdon... [more]
UPI0010BFC3F49.980e-626.63glycoside hydrolase family 95 protein n=1 Tax=Paen... [more]
A0A518RKP2_9SPHN2.250e-528.14Glycoside hydrolase family 95 protein n=2 Tax=Sphi... [more]
W3WZB5_PESFW2.280e-525.44Glyco_hyd_65N_2 domain-containing protein n=1 Tax=... [more]
A0A2A5YQP7_9SPHN2.970e-524.00Glyco_hyd_65N_2 domain-containing protein n=1 Tax=... [more]
M0CLQ5_9EURY9.150e-525.87Alpha-L-fucosidase n=1 Tax=Halosimplex carlsbadens... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7662contigEcto-sp13_S_contig7662:1513..7041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score938.3
Seed ortholog evalue1.7e-270
Seed eggNOG ortholog2880.D7FKT5
Model size1740
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.1,2-alpha-L-fucosidase activity
EggNOG OGs2CMG6@1,2QQ9E@2759
Ec32 ortholog descriptionAlpha-L-fucosidase, family GH95
Ec32 orthologEc-17_001310.1
Cds size1740
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7662.18891.1prot_Ecto-sp13_S_contig7662.18891.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7662 1513..7041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464036.6338716-CDS-Ecto-sp13_S_contig7662:1512..21871681464036.6338716-CDS-Ecto-sp13_S_contig7662:1512..2187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7662 1513..2187 -
1681464036.648895-CDS-Ecto-sp13_S_contig7662:2680..29991681464036.648895-CDS-Ecto-sp13_S_contig7662:2680..2999Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7662 2681..2999 -
1681464036.6579332-CDS-Ecto-sp13_S_contig7662:3476..36691681464036.6579332-CDS-Ecto-sp13_S_contig7662:3476..3669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7662 3477..3669 -
1681464036.6668847-CDS-Ecto-sp13_S_contig7662:4392..46251681464036.6668847-CDS-Ecto-sp13_S_contig7662:4392..4625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7662 4393..4625 -
1681464036.682115-CDS-Ecto-sp13_S_contig7662:5438..55331681464036.682115-CDS-Ecto-sp13_S_contig7662:5438..5533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7662 5439..5533 -
1681464036.6910706-CDS-Ecto-sp13_S_contig7662:6287..63971681464036.6910706-CDS-Ecto-sp13_S_contig7662:6287..6397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7662 6288..6397 -
1681464036.7030578-CDS-Ecto-sp13_S_contig7662:6926..70411681464036.7030578-CDS-Ecto-sp13_S_contig7662:6926..7041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7662 6927..7041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7662.18891.1

>prot_Ecto-sp13_S_contig7662.18891.1 ID=prot_Ecto-sp13_S_contig7662.18891.1|Name=mRNA_Ecto-sp13_S_contig7662.18891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=580bp
TGVVRDEEDTTIPKPRYGKQLPPPPVQCCPDAPTEPPAGVHALDLWDDEP
GSDWTTSYALGNGYLGAMLGMGTFKDTMFMSHGSLWSGKGKVKAGRATSG
FPLSPDRYDKFRSARESLLDGDVHAAQEAAGRMPTSPEGFVGSFEYAGEL
LLEFGEGGGQQAGGEREKGAVDEYIRHLHLNNGTAEATFSSKGPPDSGGL
GLGLGFGASRDRRKRRLVHRREAFASNVDGVLAMRLSCKEEESGRGCLSL
VATPKRQGKSHFTEGGRLPPPPPRRDQRHENGGAGVDTAGWGAGAYVGLY
RPSGRNGEKAEMGFHVCVAVFPSVGEGSGVVAEEYVDPSSPRQRHRPEGP
AGDKETQEQELMMARLADAPGGPPARNAGVMARLAEGPGGGGPAQGNTGQ
APPTRNPTPRHRIALSAAEASSEAMMLVSVVTEEKARDDDGNDETEGLRR
RCLGRLEAAVGLGFEELRRRHVEDVEGLFDRVHFSLGPSGAGGGAAGGER
RLNGGDNGVGGGGSLSRSRSCVAGLPIRTRVARSGKACTEERGEGEGIVR
HGPENGGGGGLAERTVVDDGLVELMYHYGR
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mRNA from alignment at Ecto-sp13_S_contig7662:1513..7041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7662.18891.1 ID=mRNA_Ecto-sp13_S_contig7662.18891.1|Name=mRNA_Ecto-sp13_S_contig7662.18891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5529bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7662:1513..7041- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGGCGTCGTCAGAGATGAGGAAGATACGACCATTCCGAAGCCAAGGTA
CGGCAAGCAACTCCCTCCGCCGCCGGTGCAGTGCTGCCCTGACGCTCCCA
CGGAGCCCCCTGCCGGTGCGTGTCGTGGTTGCTGTCGTCGTCGTGGTAGT
CGTTGAACGGTGGCGCTGCTGTTGTTACTGCTGTTGTTGCTGCTGTTGCC
TTCGTTGCCATGGTTGATATTTGTTGTCGTCATCGTCGTGGTTGTCGTTA
TTGTCGTAGTCGAATGTTAATATTGTGTCGTTGTCTTCACGTGAGAACTA
TCGTGGCCTGACTCTACCAGTCACCTCTGCCAGGCAAGTAGTGACCCTGT
ACAACCTGCACAAGTCCAGACGGAAAGCCACAGATGTCCGATACATGAGG
GTTCTTCGGGGAGTATCTTTGGACCAAATCGGCGCATGCGCTAATTTGGA
GGTCATTTTGCACCACAAGTGGTTGTTAATTTTCCTCTCGCGAAGCCAGA
CGATTTTCTCGTACATGAATCAATCTCGGCGTGCCCCTTGAGAGCGCTCG
AGGAGAGGAGCAGGTCAACCTCTTCCCCCCCCCCTCAGGACAATCATTTG
CATATCCGCCGTTTTTTGTGATCCTTTTCTGTATTTTACTGTAGGTGTTC
ATGCCCTGGACCTCTGGGATGACGAGCCTGGTTCGGATTGGACGACGAGC
TACGCCCTGGGCAACGGGTATCTTGGGGCGATGTTGGGCATGGGGACGTT
TAAGGTGTGATCACGAAGAAATGTTGATGAAGGAGAGAGAGCAATAGAGG
TAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGACG
GGGAGAAAGAGAGGGGGAGAGGAAGAAGACAAAGGGAGAAAGGTAGACAG
AAAGAGCAAGCTACATTCTCGCTCTCCCTCCATCCCTTCCTCTTTCCTTT
GACCCCCTACGTGTTGAAAATGTTCGTGTTGTTACCCATCTAACACGTCG
AATCTTTTTTTTTATGCTCCCGAGCATCTATTCCGCATCATTACTACGTC
GGCAATTATGTCTCGCAAGTCGCCTGTTAGCGCTTTCTAGCACAATCTCA
CGTACCATTCACAAAACGGTAGCCCCTCTTGTCTCTCCGCACAGCTAGTT
TAGCTAGCTGACACGGACGTTGTGCCGGACATGCCATGCATCACTTCATC
ACCTCCTTTCCATCTCATCACTTCATCTCTGTACCACTTCCTTTTCATGT
CGTGCCTGGTCTGCCTTGCGTCGAGTCCATACTATAGTATTATAATATGT
ACTGGAGAGTTTTTTATTCTTGCATGGAGACAATCTTCAATCCTCTATCC
TCTATCCTCTATCCTTGGGTGAATGAAAGCGCAGGAAACGCTATTTTGGC
GACAATCTATCGGAGCATGAAGGGTAGAAATTCCACACCCTCTGATTCTT
GTGCGTGTTTCTCTCCCCCATCACATTTTGCTGTGCTCGCCTCTGCACCA
AAACTTAGGACACCATGTTCATGAGCCATGGTAGTCTGTGGTCAGGAAAG
GGAAAAGTTAAGGCAGGCAGGGCTACTTCGGGTTTCCCGCTGTCTCCGGA
CAGGTGGGTAACTGCACGGCAGCCGATACATACACACACACCTCGCATAA
ATGACGCGTGTATGACGGCTGCTAGACTTTTCATTCGTAACAACAGTTCC
CGTCTACGTTTTTAGCCGCACCTGTGTTTATGCAGAATGCCGACGCTTTT
GCCTCTAGCCATTTACCATGGACTTGCATATGACATTGTTCGCTAGTCGT
GGCGTCCTGCTTTTTGCAGTTGTGCGGCGGTAGTGGTGTTGGTTCGATTC
AAACGCCGTTTCCTCGGCCCTGAACATTGCTATCACAGTTCGCTCCAGGT
GTGTTGCCTGTTGTACGTATCTTTGTCACCCATTCGTTCGTTGTCGCATG
CGTCATAAGCTTGGTAATTTCGTGGTAGGACGGACCCGGTCATGATGTGG
AAAAGAAACGCATAGCGTGTAGCTCCACGAATCTCGGAAGCACCAGCCAG
CAACTCAGGCGTTCAAGGCACCTGGCCGGGTGTCATTGCATCCCTCCGAG
CGAACAGACCAACTGCCGTTCTCTTTCGTTTCCGATTCCTTACGTTTTAT
TTAATGTCGGGTGCCCGTGCGACTCTTGGTGCTGGCTGCTCGTCAGGTAG
GTAACGTTGCCGCGACTAAGCCGCGGATCGCCATGACCAAGCGGTGCGTG
GTAGTTCATAACCACCACCGCCCCACCTGCAGTAGACATTCCCAGCGCAG
TGCCAACGCCACATCAGCACCGTGCCGGGCGCCACGGCCTGGTCTTGTCT
TGTGCCGCCGTGCTGCCCCCCCAAACCTCACTACGGGGTCCCCTTTTTTT
GTGTCCACTTCCAAAGGTATGACAAATTTCGGAGTGCACGGGAATCGCTC
CTCGATGGAGATGTTCACGCTGCCCAGGAAGCTGCGGGCCGCATGCCCAC
CAGCCCAGAAGGCTTCGTGGGGTCTTTCGAGTATGCAGGGGAACTGCTAT
TGGAGTTCGGCGAAGGCGGCGGCCAGCAGGCGGGAGGGGAGCGGGAGAAG
GGGGCCGTCGACGAGTACATTCGCCACCTGCACCTCAACAACGGCACCGG
TGAGTGTCGTGTGTCGTATGTGCGTTTTCGTCCCATTTAGTCTGATCGAA
TATGATCTAATGCAGTCTGGTCCCAGTTTGCTCCTTTCGGTATATTTGGT
TGATCAGCCGGGGTCACACAGGAAGAGCGTAGCACAGACTTTTTTTTTTT
TCTCAACTTGCCTCTGCGGTGCTTGCCTTTTGTTTTCTTCGTTTTCGTGC
ATTGTTTTCTTTCAGCAAGTCCAGCAAACACTCGTTCTGCGTATTGGTAT
TGGTGTTTTACCCCCTCGTCACCGGAACCTGTCTTCTCAGCCGTAGATAG
CCGATACTCATCGAAGTGTACACCACCCCCTGTCGTTTCTGTTTGATAGT
GAAGTCGAGAATTCTCACCCACGGCTACTATCCTCGTGTCACTGCTGTCT
CGCCTTTTTTTGTGACGCCGGTGTGGTTTTGGTCCAACCAGAACGTGTCT
TTCGTGTATGGTGTAACTTTTTCTCCCATCGCTTGTCGCTATTTATGGCC
TTCGATGGTTTTACTTGCCCTCCCTCACCTTGGATTCAAGCTAACCCGAC
CATTGTGACCCCCCCGCCCCCGTGTTGTTTTCGACTATTTTCTTCACCCG
AACCCACCTGTCTCGCACTTGACGTCCCTGTGCCGGGCACATTTTTTTCC
CAGCCGGAAGCGTTCTTGCAGCAACCTGTCACCCATCGGTTTTCCCCGTC
TCCGTTGTCTTGTTGTTTTTAGCGGAGGCCACATTCAGCTCCAAGGGTCC
GCCTGACAGCGGCGGCCTCGGCCTCGGCCTCGGCTTTGGCGCAAGCAGAG
ACCGGCGCAAGCGCCGCCTGGTGCACCGCAGGGAGGCGTTTGCCAGCAAC
GTGGACGGCGTGCTGGCGATGCGCCTGAGCTGCAAGGAGGAGGAGAGCGG
GAGAGGCTGCTTGAGGTGAGCACGTGCAACACGCATCTGCCTCCTTAGGT
GCTGCGTGCGTGTGGTACAGACTGTTGGACTTGAGGGGAAGGGGAAGGGG
AAGAGTATTGTCGGGTTATGGCCTTGCCTGGTGTTTTCGCTGTTGTCTTC
AAAGCTGCGGGGTGAGGGGGTGGGGGGCACGCTGGCCGGTGGAGTGCACG
CGAGGAAGCGAACGGCTTATGCGAGTGAGAACATTCTTTTGTTTCGCAGA
GAGGAAAAACGCCGGGGTTGGCTGTTGAAAATAGACACGTGAAGGTGCTT
GGCGTATTTCTCTCTCTTGTTTGTACAGAGAGATCCCGTGAGCAGAGACA
CACACAACAAACGATGAAGTCATCAAAGCGACATGCGGCGGGAAAACATT
GTTCCACGCAGCGACGAGATCTGATGTGTTTTCGGACGCAAACACTCCCT
CATCCCCCCCCTCAATTTGCGCGACCCTGCACCGGTACACAGCCTCGTGG
CGACGCCGAAACGGCAAGGAAAATCGCACTTTACCGAGGGGGGTCGACTC
CCCCCGCCGCCCCCCCGGCGAGATCAACGCCACGAAAACGGAGGCGCCGG
CGTGGACACGGCTGGCTGGGGCGCAGGTGCTTACGTCGGTCTATACCGGC
CCTCCGGGAGGAACGGCGAGAAAGCCGAGATGGGTTTCCACGTTTGTGTG
GCGGTGTTTCCGTCGGTCGGGGAGGGGTCGGGGGTCGTCGCGGAGGAGTA
CGTCGATCCGAGTTCGCCGCGTCAGCGACATCGTCCCGAAGGGCCTGCTG
GTGACAAGGAGGTAGGTCCGCACCCCATGCTGTGTGCCCGTGTTTGCGTT
GAAGTGCTGTTGTCTATCCTCGTCTCGTCGTCGAGTGGTCGGCTGCTGCG
TTGTTCTGCCGTTGGTGCTGAGTGCTGAAGACCATTTCCCCGAAACGAAA
CGTGAAGGATTCTCTTGTGGAAAGTAGGGAGGGAAATGCTCCGATAGTAT
AGCGTCGCTTTAGTTTGTTTTGAGGTGACGGTGTTGTTCGACAGCTGCCC
CCAAACAATGGGACGCTCGCTTTCGCTTTCCCAACCCGTGCGATGCACTT
GTCTGAGCGGGGCTCCTTCAGCACGGCGTCAGGTCACAATTTCCCCGAAT
CCCTTTGCTTGCTCGTCGAAAAGCCAGCCAGCGATGGCGCCCAGTTTTTC
CTTTCAACCCGTGGTGAAGACATCGCCAACGTTCCTCTTTTGCGAGTCTC
ATGAAGGCAGGACATGGACTCAATCTCCCCTTGCTCCCCCCATCCGTCCC
ACAGACTCAGGAGCAAGAGCTCATGATGGCGAGACTGGCCGATGCTCCCG
GCGGCCCCCCGGCGCGAAATGCGGGTGTGATGGCGAGGCTGGCAGAAGGT
CCCGGCGGCGGGGGGCCCGCACAAGGGAATACCGGGCAGGCACCACCCAC
GCGAAACCCGACCCCGAGACACCGGATCGCTCTCTCCGCTGCCGAGGCGA
GCAGCGAGGCTATGATGTTAGTTTCGGTCGTCACCGAGGAGAAAGCGCGA
GATGATGATGGCAATGATGAGACGGAGGGCCTTCGACGGCGATGCCTAGG
CAGGCTGGAAGCGGCGGTCGGGTTGGGTTTCGAGGAGCTCAGGAGGCGCC
ACGTCGAAGACGTGGAGGGGCTGTTCGACCGTGTCCACTTCTCTCTTGGC
CCCAGTGGTGCTGGCGGTGGTGCCGCTGGCGGGGAGAGAAGGTTGAACGG
TGGAGATAATGGGGTTGGAGGCGGAGGGTCACTTTCACGTTCAAGGTCTT
GCGTCGCTGGTCTGCCAATCAGAACCAGGGTTGCGAGGTCGGGGAAGGCG
TGCACTGAGGAACGAGGGGAGGGCGAGGGCATCGTGCGACACGGGCCGGA
GAATGGAGGGGGGGGAGGGCTGGCCGAGCGAACGGTTGTGGATGACGGTC
TGGTCGAACTCATGTACCACTACGGCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7662:1513..7041-

>mRNA_Ecto-sp13_S_contig7662.18891.1 ID=mRNA_Ecto-sp13_S_contig7662.18891.1|Name=mRNA_Ecto-sp13_S_contig7662.18891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1740bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7662:1513..7041- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGGCGTCGTCAGAGATGAGGAAGATACGACCATTCCGAAGCCAAGGTA
CGGCAAGCAACTCCCTCCGCCGCCGGTGCAGTGCTGCCCTGACGCTCCCA
CGGAGCCCCCTGCCGGTGTTCATGCCCTGGACCTCTGGGATGACGAGCCT
GGTTCGGATTGGACGACGAGCTACGCCCTGGGCAACGGGTATCTTGGGGC
GATGTTGGGCATGGGGACGTTTAAGGACACCATGTTCATGAGCCATGGTA
GTCTGTGGTCAGGAAAGGGAAAAGTTAAGGCAGGCAGGGCTACTTCGGGT
TTCCCGCTGTCTCCGGACAGGTATGACAAATTTCGGAGTGCACGGGAATC
GCTCCTCGATGGAGATGTTCACGCTGCCCAGGAAGCTGCGGGCCGCATGC
CCACCAGCCCAGAAGGCTTCGTGGGGTCTTTCGAGTATGCAGGGGAACTG
CTATTGGAGTTCGGCGAAGGCGGCGGCCAGCAGGCGGGAGGGGAGCGGGA
GAAGGGGGCCGTCGACGAGTACATTCGCCACCTGCACCTCAACAACGGCA
CCGCGGAGGCCACATTCAGCTCCAAGGGTCCGCCTGACAGCGGCGGCCTC
GGCCTCGGCCTCGGCTTTGGCGCAAGCAGAGACCGGCGCAAGCGCCGCCT
GGTGCACCGCAGGGAGGCGTTTGCCAGCAACGTGGACGGCGTGCTGGCGA
TGCGCCTGAGCTGCAAGGAGGAGGAGAGCGGGAGAGGCTGCTTGAGCCTC
GTGGCGACGCCGAAACGGCAAGGAAAATCGCACTTTACCGAGGGGGGTCG
ACTCCCCCCGCCGCCCCCCCGGCGAGATCAACGCCACGAAAACGGAGGCG
CCGGCGTGGACACGGCTGGCTGGGGCGCAGGTGCTTACGTCGGTCTATAC
CGGCCCTCCGGGAGGAACGGCGAGAAAGCCGAGATGGGTTTCCACGTTTG
TGTGGCGGTGTTTCCGTCGGTCGGGGAGGGGTCGGGGGTCGTCGCGGAGG
AGTACGTCGATCCGAGTTCGCCGCGTCAGCGACATCGTCCCGAAGGGCCT
GCTGGTGACAAGGAGACTCAGGAGCAAGAGCTCATGATGGCGAGACTGGC
CGATGCTCCCGGCGGCCCCCCGGCGCGAAATGCGGGTGTGATGGCGAGGC
TGGCAGAAGGTCCCGGCGGCGGGGGGCCCGCACAAGGGAATACCGGGCAG
GCACCACCCACGCGAAACCCGACCCCGAGACACCGGATCGCTCTCTCCGC
TGCCGAGGCGAGCAGCGAGGCTATGATGTTAGTTTCGGTCGTCACCGAGG
AGAAAGCGCGAGATGATGATGGCAATGATGAGACGGAGGGCCTTCGACGG
CGATGCCTAGGCAGGCTGGAAGCGGCGGTCGGGTTGGGTTTCGAGGAGCT
CAGGAGGCGCCACGTCGAAGACGTGGAGGGGCTGTTCGACCGTGTCCACT
TCTCTCTTGGCCCCAGTGGTGCTGGCGGTGGTGCCGCTGGCGGGGAGAGA
AGGTTGAACGGTGGAGATAATGGGGTTGGAGGCGGAGGGTCACTTTCACG
TTCAAGGTCTTGCGTCGCTGGTCTGCCAATCAGAACCAGGGTTGCGAGGT
CGGGGAAGGCGTGCACTGAGGAACGAGGGGAGGGCGAGGGCATCGTGCGA
CACGGGCCGGAGAATGGAGGGGGGGGAGGGCTGGCCGAGCGAACGGTTGT
GGATGACGGTCTGGTCGAACTCATGTACCACTACGGCAGG
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