mRNA_Ecto-sp13_S_contig7654.18878.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7654.18878.1
Unique NamemRNA_Ecto-sp13_S_contig7654.18878.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7654.18878.1 vs. uniprot
Match: D8LFQ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ3_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 2.010e-46
Identity = 109/160 (68.12%), Postives = 122/160 (76.25%), Query Frame = 3 
Query:    3 PIDVALQKLVGKPEEVQEFLRLSTQGSLPQLQRCRALLNDGGAGLLSATHASNGCPIYRCKATSGSHLSPASVRGAILAAASQTRGPVGDMAAALDGRDSTERQRAEGGLRRLEVAAKAGNVDEFLRVCGELGLRVQINTDHPAFVSGADLDRIAPCRVG 482
            PI  ALQ+L G PEEVQ+FLRLST+ S  QL  CRALL DGGAGLLSA HASNGC IYR  ATSGS L PA++R  ILAAASQTRGPVGDMAA LDG +STER+RAE GLRRL VAAKAG+V  FL VCGE+ + + I+T HPAF + A   R  P  VG
Sbjct:  462 PIAGALQELAGTPEEVQKFLRLSTEASPQQLGLCRALLKDGGAGLLSAKHASNGCRIYRGGATSGSDLGPATIRN-ILAAASQTRGPVGDMAAVLDGPESTERRRAEEGLRRLRVAAKAGDVVAFLGVCGEIDVSIHIDTTHPAFANNAG--RTEPLLVG 618
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7654.18878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFQ3_ECTSI2.010e-4668.13Ubiquitin carboxyl-terminal hydrolase family prote... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7654contigEcto-sp13_S_contig7654:1191..5266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2339
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-01_001300.1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464035.6120248-UTR-Ecto-sp13_S_contig7654:1190..14621681464035.6120248-UTR-Ecto-sp13_S_contig7654:1190..1462Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7654 1191..1462 +
1681464035.630201-UTR-Ecto-sp13_S_contig7654:1825..22581681464035.630201-UTR-Ecto-sp13_S_contig7654:1825..2258Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7654 1826..2258 +
1681464035.6384563-UTR-Ecto-sp13_S_contig7654:3255..33831681464035.6384563-UTR-Ecto-sp13_S_contig7654:3255..3383Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7654 3256..3383 +
1681464035.647098-UTR-Ecto-sp13_S_contig7654:4123..52661681464035.647098-UTR-Ecto-sp13_S_contig7654:4123..5266Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7654 4124..5266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464035.6216202-CDS-Ecto-sp13_S_contig7654:1462..18251681464035.6216202-CDS-Ecto-sp13_S_contig7654:1462..1825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7654 1463..1825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7654.18878.1prot_Ecto-sp13_S_contig7654.18878.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7654 1463..1825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7654.18878.1

>prot_Ecto-sp13_S_contig7654.18878.1 ID=prot_Ecto-sp13_S_contig7654.18878.1|Name=mRNA_Ecto-sp13_S_contig7654.18878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MAAALDGRDSTERQRAEGGLRRLEVAAKAGNVDEFLRVCGELGLRVQINT
DHPAFVSGADLDRIAPCRVGGVPHVRRVTVLLPGLPCTHRQATAHWCASV
SLRWRHEWRYRRPQQERSLL*
back to top

mRNA from alignment at Ecto-sp13_S_contig7654:1191..5266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7654.18878.1 ID=mRNA_Ecto-sp13_S_contig7654.18878.1|Name=mRNA_Ecto-sp13_S_contig7654.18878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4076bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7654:1191..5266+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCCATCGACGTAGCCCTGCAGAAGTTGGTTGGGAAGCCGGAGGAGGTG
CAGGAGTTCCTGCGCCTCAGCACCCAGGGGTCACTCCCACAGCTTCAGCG
GTGCCGCGCTCTCCTGAACGACGGCGGCGCCGGCCTCCTGTCGGCAACGC
ATGCCTCCAACGGCTGCCCCATCTACCGCTGCAAGGCGACGTCAGGCTCC
CATCTCAGCCCGGCCAGCGTGCGGGGGGCCATCCTCGCCGCCGCCAGCCA
GACGCGCGGCCCCGTGGGTGACATGGCGGCTGCACTGGACGGCCGCGATT
CGACGGAGCGACAGAGGGCAGAGGGGGGGCTTCGGCGCCTAGAGGTCGCG
GCAAAAGCTGGCAACGTTGACGAGTTCTTGAGGGTGTGCGGCGAGCTTGG
TCTCCGGGTTCAGATCAACACCGACCACCCGGCGTTCGTCTCCGGCGCGG
ACTTGGACAGGATCGCTCCTTGTCGGGTGGGGGGCGTGCCCCACGTACGA
AGAGTTACCGTTCTACTACCCGGACTGCCCTGTACACATCGGCAAGCTAC
GGCGCACTGGTGTGCAAGCGTCTCCCTTCGGTGGCGTCACGAGTGGCGCT
ATCGCCGCCCTCAACAAGAACGATCGCTGCTGTAGCAGTGTCCATGACCG
TCGTTGCGGCGGGCAGGCCACCCGGGATGGTGCAGATGTCGTGCGCTGCG
AGCATCCCGACCTCGTTGCGAGCATCCCGACCTTGTCAACCTTGCCGGAC
CACACGAGGCAGTGTCGTGCGTCGCCTTGGTCACCCACCTCACCAAAGCT
GAGGACAAATAGAGCGCTGACGTTCAGGAACCGGCTGAGGATCAACGTGG
TGGTGAGGTCCAGCAACGTCCGGCTGATCTTCTGCACTCGCCGCGGCATG
GTCTTGCTGTCGAAAGAAGGGCGCCGCGGCGTTCGGCGGCGAGAAGGAGG
CTCTCCGAGCGGGTGTGGAGAAAAACGACGAGGTCTTCGAGCAAGCGTTT
GACGTCATTCGCACACGGTTTGGCCCCGCTTTGTTCACGACGCAGCAGAG
ATCCGACGGCGGTGAGGAACAAAATAAAGTTTCCTGTTGCTGTTGTTTTG
TTGCTGTCGTTGTCGGTGGGTGTTTTGCCGCTGTCGCTATCATTGCGTCT
TCGTGGTGTGGGTGTAGGATTTCTGTCGGTATTTTTCGATTGGATGAATT
CGTGCCTGTCGTGCCAGGGGTTGCTATCTCGCCGACGCCGCCAGCTTGCC
CCCCCCCTCCTGTCCCCCCCAGCTGTTTTCGATCGGCAGAGATTGCTAGC
GTGATGATTGCCGGCGGTCTCAGGTCGTATATCCAGCCGCAGTCGATTAT
CATCTTGTATTGCCCGGCTGGCACCTCCATCGTCTTGATGCCACCGCTGT
CGCTGTCGCCGTCGCATGCTGCTGCTGCTGCTGCTGCTGCTGCTGGCGCT
GGTCGAGGCAGGGAAGAAGGTAAGTAAGAGAGGTCTGGCTGGCTTCGCTG
CTGGTGTTTTATGTCGTCTTTGTTTGCTGGCGTCTTTCGTGTTGTTGTGT
TTTTTTGTGTTGTTCTAGTTTCCAGGGTTTGTTGTCCTCTCGATGATGTC
GTTGTTTGTAGAGCTCATTTCCATTTGGATGCATCCATGCCTGTTGCGCC
AGGGGTTGCTTTCTCGCCAACGCCGCCCACCTGCCCCGTCCCGCTGCACC
GGCTGTTTGTATTGTAACCGATCGCTCTCGCATGGTATTTAGTAGAAGGC
ACCGACGGGCTACTGTTTTTTGGCGTACTTTGCCTCGCTGTTGCTTTCGT
TGTCTCTTGATGTTGTGGGTGTAGAATTCTGGCGATTGAATGCATTCATG
CCTCGGTGCGGCTGTTTCGCCAAGGGTTGCCATGGCCCAGTGGTCCCATC
CGCCCCCCGCCCCCCACACCTTTCGATCGGTCGCGAGTGTTTTAAGTAGG
TTCAAGCAAGGAGCAGATCATGTACACGAAAAGTTGGACTTTCTGATATC
ACATTTCCCCCTCTCTCCCCCCTTCCCCCACCAACAAACATCCGATTATC
GTTTTCTGGTTTTGCAGCGAGGACGTTTACTGTGGATGGCCAGAAAGTCG
CGATCCCCGAGGCCGTGCGGCAGAGAACGGTTGCGGCGACACCCAACCCG
GAAGCGGCGATGCGTCAGCGGTCTGAGGACAGCGACCGCGTGGGTAAGCT
TTCATTACCGTTGTTGTTGTGGTTGTGGTTGATGGCTGTTGTCAACAGTG
AACTTTGGATGACTCCTTTCATAAGACTACGTAGCTCGTGTTGGCGCGAA
ATCGATTGCAGCGTCGCCCACGAAGCCATTCTACCCCGCCCCCCCCTTTA
GCCCCGGCTGTTTGTATTGTCGCCGATCGCTCACGCATGGTACTTAGTAG
GAGGCACCGGCGGCCGATTGTTCCGTGGGGTATGTTGCCTCCCTGTTGCT
TTCGTCGTCTCTTGATGGTGTGGGTGTAGCATTTTGACAATTGGATGCAT
CAATACCAAGTGTGGCTGTTGCGCCAAGGGTTGCCGTGGCCCAGCGCGGC
CAATCTACCCCTGCCCCCTCTCCTGCCCAAACATTAAAAGTTGGTAGGTA
TGGGCCGCGGGCGTTGTCGGGTGATGCCTGTGCGGAGGATTGTTGTTGTC
GCTGTCTTTCTGTAGGTCCCACAGTGTGGATCTCGCTTTGGATCACATTT
GGCGCCAGCCTTTGCGTTGCCCTGCCAAGGGTGCCCAGCTGCCCTCCCGC
CTCCGCCCCAGTTGTTTTTGTTGGCAGCGATTGTTCGCTTGACGTTTGCA
AATTGATGCGAAGAGGTGCAACCGATGCAGTGTTTGTTTAGTCCACCGTG
ATGTGTAGGTGTTTCGTTTTCATGTCCTCTCCTTGCAAGCCTAGGCTCTA
TTTAATGTTCATCGTTTTCCGAACGCGAAACAGGAAAGTGCACCTTGTGA
AACAAAATCTCTTCCAGCGGTGGACCGCGCGGTGCGCGGGTGGCGAAGGA
ACCCATCGACGACAGCAGCGTGATGGCGTCGATCGGCTCCTACCGCCGAG
CGTACAAGATCGCGGTGGGCGATAGGAAGGGCCGAGTCATGATCAGCAAA
TCCAAGTTTTTCCGCTTTCGGGACGTCCGCGGCACCGGCAGCAACGAGTG
GATCCTCGGAAAACGACCATTCGACAGCAGGAAGGGGGGGGGATAAAACC
CTCTCATCATCCTGTCGACGATATGGACAAAATGGTGCCGGGGGAGTGGG
ATGCTGACCCCCACAAGGGGCTGCACCACGACGACCTGGTTCGGTACGCC
AAGGAATACCTGCAGAAAAGAGAAAAGGTCACCGCTCCCGCCCAACCGTG
GATATGGCGCGGGTCCCCTACCGTTGTTTGGCGTGAGATCTGAAAGATGG
GATGAATTGTGGAAGTTTCGTGGTTTACGAGACTGATGGCGATTCGATCG
TATCTAGCTTCCCTGCAAGAGGTAGGCTTGGGCAAGCAGATTCTCAAGGG
TCCTGGTGGCGAAGTTCATGCACGTTCAAATGGCCGGTGGGTAAGGTTCA
GACAAAGTGCGAGCAGAGTGAAATTGAGTTTGTTGAGGACAGCGGAGAGA
CCATTGCCGTCGCCATTCATTCGTGTCCATTCTGGTTCCTATGGGATTGT
GACGAACGGGATTGCGATGCACCGTAGCATGGGATTGAGTGGCCGGGCAA
GACTGTCCACTGGAGGTGGATTAGAAAGTAGCGAGAGAATGACTGTGTTG
TGGGTCATAGATGAGGGCTCGCCCCGATCTTGAGCGAGAGAATCATTTGC
CCGAAAGGCGTTTATTCTTTGCGATATGCACGAACCCTCTTCGACATGCG
CTTCTTCGGAGAGGGTCCGCTAATTGCGTAACCAGCACACCCGACGGTTG
TTTCTGCGGGGTTGCACGTTAAAAATTTCACAAGTAGCCTTCATAGGTGA
AATTCTGCAAGTGTTTTAGATGCCGTTGGCGTGGTTTTCCTTCCCGAAGG
TAATGATCCGCGTTGTTGAGATTTTGGGCCTTTTTTGGTAGGGTTCTTTC
AACTATAATAACAGTCGCGACGCAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7654:1191..5266+

>mRNA_Ecto-sp13_S_contig7654.18878.1 ID=mRNA_Ecto-sp13_S_contig7654.18878.1|Name=mRNA_Ecto-sp13_S_contig7654.18878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7654:1191..5266+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCTGCACTGGACGGCCGCGATTCGACGGAGCGACAGAGGGCAGA
GGGGGGGCTTCGGCGCCTAGAGGTCGCGGCAAAAGCTGGCAACGTTGACG
AGTTCTTGAGGGTGTGCGGCGAGCTTGGTCTCCGGGTTCAGATCAACACC
GACCACCCGGCGTTCGTCTCCGGCGCGGACTTGGACAGGATCGCTCCTTG
TCGGGTGGGGGGCGTGCCCCACGTACGAAGAGTTACCGTTCTACTACCCG
GACTGCCCTGTACACATCGGCAAGCTACGGCGCACTGGTGTGCAAGCGTC
TCCCTTCGGTGGCGTCACGAGTGGCGCTATCGCCGCCCTCAACAAGAACG
ATCGCTGCTGTAG
back to top