mRNA_Ecto-sp13_S_contig7647.18864.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7647.18864.1
Unique NamemRNA_Ecto-sp13_S_contig7647.18864.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7647.18864.1 vs. uniprot
Match: A0A164MQB8_9AGAM (TPR-like protein n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164MQB8_9AGAM)

HSP 1 Score: 77.4 bits (189), Expect = 4.010e-14
Identity = 51/115 (44.35%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   34 KARGNALFRDGDFRGAADAFQHAADADAAGLDLELACLCNLAYAQIKLGSMKDAEGTCSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKMLHRAQQK 378
            K +GNA F+ G++  A   +  A  AD       L    N A A +KLG  +DAE  C+  L + P+  KALFRRGQAR ALGR  DA  DFR ++ LEP N  A + L +A+QK
Sbjct:   11 KEKGNASFKAGNYAEAVGHYSAAIVADRKEPTYPL----NRAAAYLKLGKNEDAERDCTTCLGLSPTNVKALFRRGQARAALGRTEDAILDFREILKLEPKNEPAKEELAKAEQK 121          
BLAST of mRNA_Ecto-sp13_S_contig7647.18864.1 vs. uniprot
Match: E2LL38_MONPE (Uncharacterized protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LL38_MONPE)

HSP 1 Score: 69.3 bits (168), Expect = 2.100e-11
Identity = 50/130 (38.46%), Postives = 65/130 (50.00%), Query Frame = 1
Query:   16 EHVAETKARGNALFRDGDFRGAADAFQHAADADAAGLDLELACLCNLAYAQIKLGSMKDAEGTCSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNV----EATKMLHRAQQKEESIT 393
            E     K +GNA F+ GDF  A   +  A   D       L    N A A +K+G  +DAE  C+  L + PS  KA+FRRGQARL +G+  +A  DF A   +EPGN     E  K+   AQ+K    T
Sbjct:    8 EKAQIAKEKGNAAFKSGDFFTAIGHYSAAIIEDRKDPTFPL----NRAAAYLKIGKNEDAERDCTTVLTLSPSNVKAIFRRGQARLGMGKLDEAKADFEAAAKIEPGNQAVKDELEKIRVLAQKKASKTT 133          
BLAST of mRNA_Ecto-sp13_S_contig7647.18864.1 vs. uniprot
Match: A0A0W0FC10_9AGAR (RPAP3_C domain-containing protein n=2 Tax=Moniliophthora roreri TaxID=221103 RepID=A0A0W0FC10_9AGAR)

HSP 1 Score: 68.2 bits (165), Expect = 7.990e-11
Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 1
Query:   16 EHVAETKARGNALFRDGDFRGAADAFQHAADADAAGLDLELACLCNLAYAQIKLGSMKDAEGTCSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGN 339
            E     K +GNA F+ GD+  A   +  A   D       L    N A A +KLG  +DAE  C+  L + PS  KA+FRRGQARL +G+  +A  DF A   +EPGN
Sbjct:    5 EKAQTAKEKGNAAFKSGDYPIAIGHYSAAIIEDRNDPTFPL----NRAAAYLKLGKNEDAERDCTTVLTLSPSNVKAIFRRGQARLGMGKLDEAKADFEAAAKIEPGN 108          
BLAST of mRNA_Ecto-sp13_S_contig7647.18864.1 vs. uniprot
Match: A0A8H5B3H2_9AGAR (RPAP3_C domain-containing protein n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5B3H2_9AGAR)

HSP 1 Score: 66.6 bits (161), Expect = 3.110e-10
Identity = 43/102 (42.16%), Postives = 56/102 (54.90%), Query Frame = 1
Query:   34 KARGNALFRDGDFRGAADAFQHAADADAAGLDLELACLCNLAYAQIKLGSMKDAEGTCSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGN 339
            K  GN  F+ GD+  A   +  A  AD A     L    N A A +KLG  +DAE  C+  L + P   KALFRRGQAR+A+ + L+A  DF  ++V EP N
Sbjct:   10 KEEGNTAFKAGDYPTAIGHYTSAILADRADPTYPL----NRAAAYLKLGKAEDAERDCNIVLRLNPKNVKALFRRGQARVAMNKLLEAHKDFSDILVAEPSN 107          
BLAST of mRNA_Ecto-sp13_S_contig7647.18864.1 vs. uniprot
Match: A0A8H5BPN1_9AGAR (Uncharacterized protein n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5BPN1_9AGAR)

HSP 1 Score: 66.2 bits (160), Expect = 4.510e-10
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   34 KARGNALFRDGDFRGAADAFQHAADADAAGLDLELACLCNLAYAQIKLGSMKDAEGTCSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKML 360
            K  GNA FR GD+ GAA  +Q A D ++     +L    NLA A +KL    +AE  C++ L  Q    K L+RRG+AR  LGR  +A  D RAV+ L+P N++A + L
Sbjct:  355 KELGNAAFRKGDYEGAAKLYQAAHDIESELPHYQL----NLAAAHLKLNKWIEAEKACTKVLE-QHRSVKGLYRRGKARHMLGRHEEAIQDLRAVLRLQPTNMDAMREL 458          
BLAST of mRNA_Ecto-sp13_S_contig7647.18864.1 vs. uniprot
Match: UPI001B8685B1 (uncharacterized protein n=3 Tax=Suillus TaxID=5379 RepID=UPI001B8685B1)

HSP 1 Score: 65.9 bits (159), Expect = 5.480e-10
Identity = 50/133 (37.59%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   10 AEEHVAETKARGNALFRDGDFRGAADAFQHAADADAAGLDLELACLCNLAYAQIKLGSMKDAEGTCSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNV-------EATKMLHRAQQKEES 387
            A +     K +GNA F+ GD+  A   +  A  A+A      L    N A A +KLG  +DAE  C+  L + P+  KALFRRGQAR+ALG    A  DF     LEP N        E  K + + +QK +S
Sbjct:    2 ASDRAKIAKDQGNAAFKTGDYPAAIGHYTSAILANADDPTFPL----NRAAAYLKLGKNEDAERDCTTVLKLSPNNVKALFRRGQARMALGCLDQARADFVGASELEPSNQSVKQELSEVEKSIQQQKQKHDS 130          
BLAST of mRNA_Ecto-sp13_S_contig7647.18864.1 vs. uniprot
Match: A0A8H8M8Q6_9AGAM (RNA polymerase II-associated protein 3 n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8M8Q6_9AGAM)

HSP 1 Score: 65.9 bits (159), Expect = 5.640e-10
Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 1
Query:   22 VAETKARGNALFRDGDFRGAADAFQHAADADAAGLDLELACLCNLAYAQIKLGSMKDAEGTCSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGN 339
             A+ K +GN  F+ G++  A   +  A  AD+      L    N A A +KL   +DAE  CS  L +QP+  KALFRR QAR+ LG+  DA TD  A    EPGN
Sbjct:    6 AAQHKEKGNESFKAGNYPEAIGHYTAAIIADSTDPTFPL----NRAAAYLKLNKNQDAERDCSTVLKLQPNNVKALFRRAQARVVLGKFADARTDLLAAAKAEPGN 107          
BLAST of mRNA_Ecto-sp13_S_contig7647.18864.1 vs. uniprot
Match: A0A0B7G2H7_THACB (RNA polymerase II-associated protein 3 n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=A0A0B7G2H7_THACB)

HSP 1 Score: 65.5 bits (158), Expect = 7.800e-10
Identity = 45/106 (42.45%), Postives = 55/106 (51.89%), Query Frame = 1
Query:   22 VAETKARGNALFRDGDFRGAADAFQHAADADAAGLDLELACLCNLAYAQIKLGSMKDAEGTCSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGN 339
             AE K +GNA F+ GD+  A   +  A  AD       L    N A A +KL   +DAE  C+  L +Q    KALFRR QAR+ALG+  DA  D  A    EPGN
Sbjct:    3 AAEHKEKGNAAFKAGDYPTAIGHYTSAILADGTDPTFPL----NRAAAYLKLNKNEDAERDCTSVLKLQAKNVKALFRRAQARVALGKLQDARADLVAAAKAEPGN 104          
BLAST of mRNA_Ecto-sp13_S_contig7647.18864.1 vs. uniprot
Match: A0A8H6XBN0_9AGAR (RPAP3_C domain-containing protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6XBN0_9AGAR)

HSP 1 Score: 65.5 bits (158), Expect = 7.980e-10
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 1
Query:   22 VAETKARGNALFRDGDFRGAADAFQHAADADAAGLDLELACLCNLAYAQIKLGSMKDAEGTCSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKMLHR 366
             A+ K +GNA F+ GD+  A   +  A  AD     L L    N A A +KLG  +DAE  CS  L +     KALFRR QAR+ LG+  +A  D +    LEP N    + L++
Sbjct:    2 AAQEKEKGNAAFKAGDYPTAIGHYSAAIHADRTDATLPL----NRAAAYLKLGKNEDAERDCSTVLTLSKGNTKALFRRAQARVELGKLSEAHEDLKEAAKLEPANQSVKQELNK 112          
BLAST of mRNA_Ecto-sp13_S_contig7647.18864.1 vs. uniprot
Match: UPI001C7B83AA (uncharacterized protein n=1 Tax=Guyanagaster necrorhizus MCA 3950 TaxID=1450536 RepID=UPI001C7B83AA)

HSP 1 Score: 64.7 bits (156), Expect = 1.370e-9
Identity = 44/107 (41.12%), Postives = 56/107 (52.34%), Query Frame = 1
Query:   34 KARGNALFRDGDFRGAADAFQHAADADAAGLDLELACLCNLAYAQIKLGSMKDAEGTCSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATK 354
            K +GN  F+ GD+  A   +  A   D     L L    N A A +KLG   DAE  C+  L +  S AKALFRR QAR+ +G+  +A  D RA   LEP NV  T+
Sbjct:   10 KEKGNTSFKAGDYAMAVGHYSSAIVNDRKDYTLPL----NRAAAYLKLGKYDDAERDCTTVLSLNISNAKALFRRSQARVGMGKLKEAEGDLRAAAKLEPSNVSITQ 112          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7647.18864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A164MQB8_9AGAM4.010e-1444.35TPR-like protein n=2 Tax=Sistotremastrum TaxID=139... [more]
E2LL38_MONPE2.100e-1138.46Uncharacterized protein (Fragment) n=1 Tax=Monilio... [more]
A0A0W0FC10_9AGAR7.990e-1140.74RPAP3_C domain-containing protein n=2 Tax=Moniliop... [more]
A0A8H5B3H2_9AGAR3.110e-1042.16RPAP3_C domain-containing protein n=1 Tax=Psilocyb... [more]
A0A8H5BPN1_9AGAR4.510e-1042.20Uncharacterized protein n=1 Tax=Psilocybe cf. subv... [more]
UPI001B8685B15.480e-1037.59uncharacterized protein n=3 Tax=Suillus TaxID=5379... [more]
A0A8H8M8Q6_9AGAM5.640e-1041.51RNA polymerase II-associated protein 3 n=2 Tax=Cer... [more]
A0A0B7G2H7_THACB7.800e-1042.45RNA polymerase II-associated protein 3 n=1 Tax=Tha... [more]
A0A8H6XBN0_9AGAR7.980e-1038.26RPAP3_C domain-containing protein n=1 Tax=Mycena s... [more]
UPI001C7B83AA1.370e-941.12uncharacterized protein n=1 Tax=Guyanagaster necro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7647contigEcto-sp13_S_contig7647:178..1157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score77.8
Seed ortholog evalue4.2e-12
Seed eggNOG ortholog157072.XP_008866335.1
Model size396
KEGG koko:K19870,ko:K21991
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Tetratricopeptide repeats
EggNOG OGsCOG0457@1,KOG4648@2759
Cds size396
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464034.6035042-CDS-Ecto-sp13_S_contig7647:177..2871681464034.6035042-CDS-Ecto-sp13_S_contig7647:177..287Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7647 178..287 +
1681464034.615617-CDS-Ecto-sp13_S_contig7647:871..11571681464034.615617-CDS-Ecto-sp13_S_contig7647:871..1157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7647 872..1157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7647.18864.1prot_Ecto-sp13_S_contig7647.18864.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7647 178..1157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7647.18864.1

>prot_Ecto-sp13_S_contig7647.18864.1 ID=prot_Ecto-sp13_S_contig7647.18864.1|Name=mRNA_Ecto-sp13_S_contig7647.18864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MTHAEEHVAETKARGNALFRDGDFRGAADAFQHAADADAAGLDLELACLC
NLAYAQIKLGSMKDAEGTCSRALHIQPSCAKALFRRGQARLALGRALDAA
TDFRAVIVLEPGNVEATKMLHRAQQKEESITN
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mRNA from alignment at Ecto-sp13_S_contig7647:178..1157+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7647.18864.1 ID=mRNA_Ecto-sp13_S_contig7647.18864.1|Name=mRNA_Ecto-sp13_S_contig7647.18864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=980bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7647:178..1157+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCATGCCGAGGAACATGTTGCAGAAACAAAAGCGAGAGGCAATGC TTTATTCCGCGATGGGGATTTCCGAGGTGCTGCGGACGCGTTTCAGCATG CTGCGGACGCGTTTCAGCATGCTGCAAACGCTGTCCGTCAGGTAAAAGCA GTTTGAATGCACAGATCCAAAGATCCAGCACACCTTCTACCAGCTAACAG ACCGCGTACACATCCATTTGTAATGACCTCCGCTCATGTCCCCGTGAAGA AGACAGGAGTCGCTTGCTTTTATGCTGCGTGAAATAGAGTAAGAACTTTG AGAGAGACAGCAAGCTGTGGTCGAACCATTTTTATGTAGAATATGTGCAG ACACACGCATCATGCGGCCCGTGCAAACACTGCTGTACACGTTATTTTTT CCACCATACACACAATACACAAAAATGTTCTCGCCTAGTTCGTGTCGTTG ATGTTTCTTTGTTGCTGTTGCTGCTGTGTGCTCGACACACCGAGACACTT CGGACCTCTCTCGTCTCAATTCCGCGGTAACGAGCACTCCCATACGCAGG ATCTGGACATGAAGGCATTCCTTTAGTCTACAAAAGTCTAGTGACCTCTG TTGGTAAAATTGGGTGAAGCAGCCTGGCCCTAACGCCGCGTACCCTATTT CTCTTCTGCCCCGCGCATTGCTCACAGATGCCGTGCCTGAAAAGCGATGC CGCGGGTCTAGACCTAGAACTAGCTTGCCTTTGCAACCTTGCTTACGCTC AAATCAAGCTAGGCTCGATGAAAGACGCAGAAGGAACTTGTTCTCGAGCA CTCCATATCCAACCTTCCTGCGCCAAGGCGCTCTTTCGCCGCGGGCAGGC TCGGCTAGCCTTGGGCAGGGCGCTCGACGCCGCAACCGATTTCCGAGCGG TGATTGTCCTCGAACCTGGCAACGTCGAAGCCACCAAAATGCTTCATCGC GCGCAGCAGAAGGAAGAGAGTATTACGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7647:178..1157+

>mRNA_Ecto-sp13_S_contig7647.18864.1 ID=mRNA_Ecto-sp13_S_contig7647.18864.1|Name=mRNA_Ecto-sp13_S_contig7647.18864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7647:178..1157+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCATGCCGAGGAACATGTTGCAGAAACAAAAGCGAGAGGCAATGC
TTTATTCCGCGATGGGGATTTCCGAGGTGCTGCGGACGCGTTTCAGCATG
CTGCGGACGCCGATGCCGCGGGTCTAGACCTAGAACTAGCTTGCCTTTGC
AACCTTGCTTACGCTCAAATCAAGCTAGGCTCGATGAAAGACGCAGAAGG
AACTTGTTCTCGAGCACTCCATATCCAACCTTCCTGCGCCAAGGCGCTCT
TTCGCCGCGGGCAGGCTCGGCTAGCCTTGGGCAGGGCGCTCGACGCCGCA
ACCGATTTCCGAGCGGTGATTGTCCTCGAACCTGGCAACGTCGAAGCCAC
CAAAATGCTTCATCGCGCGCAGCAGAAGGAAGAGAGTATTACGAAC
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