mRNA_Ecto-sp13_S_contig7645.18863.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7645.18863.1
Unique NamemRNA_Ecto-sp13_S_contig7645.18863.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7645.18863.1 vs. uniprot
Match: A0A6H5JS20_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS20_9PHAE)

HSP 1 Score: 778 bits (2010), Expect = 1.920e-275
Identity = 444/608 (73.03%), Postives = 452/608 (74.34%), Query Frame = 1 
Query:  286 KNTEYEYEVSVPATVDTGSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEDRRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLRRASEVAGGKLGVGGAGSAGPNGGGGAPPVITSVLGNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSMARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRAPPGRQLPSTGPQDGGPPLAGSFLRPSGSGGASAAVPAGAAGSVDGSQWSLRGMLPAWSREQPSEPGDGS---------------------------------------------------------------------------------------------------TLRQAPGSSFEGGGSSRGSSAWMPDMSRGSGTSTSSSLPGNLLGAAGAVPTSPTPREELTGSGDTSNGNSGRGPTDRPARGELFWAAGSGGENAVFPGSSGGLSMAASPAWPSEQSNAPLGGAAGAEGSARAGESSGGRNLAVPTFSSSLDTGARFTSEVGRSGGTFIGTTTLEESGXXXXXXXXXXXXXENPFA 1812
            +NTEYEYEVSVPATVDTGSRV GVTWYEVHTMRKADSKGTLVHRRFRDF+ALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVE+RRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKL+RASEVAGGKLGVGGAGSAGPNG GGAPPVITSVLGNGRSPPGVC GDRLFKVNGDSTELMSLEAAWSS+ARATRPVMLHFLGPILRMDSTLAPLPEAFLRHR PPGRQLPSTGPQDGGP LAGSFLRPSGSGGASA           G QW LRGMLPAWSREQPS+PGDGS                                                                                                   TLRQAPGSSF          AWMPD SRGSGTSTSSS PGN+LGAAGAVPT PT REEL GSG TSNGNS RGPTDRPARG LF AAGSGGENA FPGSSGG SMAASPAWPSEQSNAPLGGAAGAEG  R GESSGGRNLAVPTFSSSLDTGARFTSEVGRSGGTF+GTTTL ES              ENPFA
Sbjct:  116 QNTEYEYEVSVPATVDTGSRVRGVTWYEVHTMRKADSKGTLVHRRFRDFHALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAGSAGPNGDGGAPPVITSVLGNGRSPPGVCSGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRQLPSTGPQDGGPSLAGSFLRPSGSGGASAXXXXXXXXXXXGGQWRLRGMLPAWSREQPSKPGDGSALAPGGSAAPGREWNPHENPRTRIGNGVGRGGAVGPFGNGTGAAAAGRTNPANSSLFGGDATAGASGGGMGGAAKKESLFDSWRSPRAAXXXXXXXXXGTLRQAPGSSFGXXXXXXXXXAWMPDTSRGSGTSTSSSPPGNMLGAAGAVPTPPTSREELAGSGSTSNGNSVRGPTDRPARGGLFSAAGSGGENAGFPGSSGGSSMAASPAWPSEQSNAPLGGAAGAEGRVRGGESSGGRNLAVPTFSSSLDTGARFTSEVGRSGGTFVGTTTLGESDDHHGFEEEDGEEEENPFA 723
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7645.18863.1 vs. uniprot
Match: D8LMZ7_ECTSI (PX domain containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ7_ECTSI)

HSP 1 Score: 590 bits (1521), Expect = 6.110e-207
Identity = 301/313 (96.17%), Postives = 307/313 (98.08%), Query Frame = 1 
Query:  286 KNTEYEYEVSVPATVDTGSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEDRRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLRRASEVAGGKLGVGGAGSAGPNGGGGAPPVITSVLGNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSMARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRAPPGRQLPSTGPQDGGPPLAGSFLRPSGSGGASAAVPAGAAGSVDGSQWSLRGMLPAWSREQPSEPGDG 1224
            +NT+YEYEVSVPATVDTGSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVE+RRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKL+RASEVAGGKLGVGGAGSAGPNG GGAPPVITSVLGNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSS+ARATRPVMLHFLGPILRMDSTLAPLPEAFLRHR PPGRQLPST PQDGGPPLAGSFLRPSGSGGASAA PAGAAG VDG QWSLRGMLPAWSREQPS+PGDG
Sbjct:   43 QNTDYEYEVSVPATVDTGSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAGSAGPNGDGGAPPVITSVLGNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRQLPSTAPQDGGPPLAGSFLRPSGSGGASAAGPAGAAGGVDGGQWSLRGMLPAWSREQPSKPGDG 355
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7645.18863.1 vs. uniprot
Match: A0A835YSM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM5_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.070e-28
Identity = 88/244 (36.07%), Postives = 122/244 (50.00%), Query Frame = 1 
Query:  289 NTEYEYEVSVPATVDT----GSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEDRRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLRRASEVAGGKLGVGGAGSAGPNGGGGAPPVITSVLGNGRSPP---------------GVCPGDRLFKVNGDSTELMSLEAAWSSMARATRPVMLHFLGPI 963
            N E+E++V +P++V      G     VTWY +   R  D   T VHRR+ DF  L +Q + +MKGHHL  SLP  P K   L  +  D +F+E RR  L+ YL+TLL++PHV  LD+TRAFLG+VG+LRE               R+  V+GG  G GGAG A          +   V G+G S P               GV  GD L +V G + E  SL      + +  +P ++H +  +
Sbjct:  194 NQEHEFDVRIPSSVQACAYKGGDQPNVTWYLLRVRRLRDGACTEVHRRYTDFEMLHQQCDGMMKGHHLSDSLPPLPCKSPLL--DRSDAAFIESRRAELQAYLRTLLRVPHVGGLDTTRAFLGLVGDLRE---------------RSFVVSGGAAGGGGAGFA----------LTADVQGDGLSDPHGFLTVAQLLRGAPAGVAVGDMLLRVGGATIEGKSLLQVTERLEKMPQPYLVHLISAV 410
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7645.18863.1 vs. uniprot
Match: A0A4D9CLT8_9STRA (PX domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLT8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.260e-26
Identity = 80/216 (37.04%), Postives = 112/216 (51.85%), Query Frame = 1 
Query:  340 SRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEDRRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLRRASEVAGGKLGVGGAGSAGPNGGGGAPPVITSV--LGNGRSPPGVCPGDRLFKVNGDS-TELMSLEAAWSSMARATRPVMLHFLGPILRMDS 978
            S+   VTWYE+   R +D   TLVHRR+R+F  L EQV +  KGHHLRSSLP  PG++ KL  +H D +FVE+RR  LE  L  LL +PHV  +   + FLG    L+E SV +  ++LG  + R + V    +                  V+T V   G G     V  GD L KV G+  ++    +     ++R  RP+++HFL  + R  S
Sbjct:  126 SKEKSVTWYELTVTRGSDGARTLVHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFLGFFDRLKEHSVIFTQRDLGLSITR-TVVPEESI------------------VVTRVKEAGPGGQKSRVMVGDTLSKVGGEPVSKFGGFDGVAFQVSRGLRPIVIHFLEAVDRNPS 322
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7645.18863.1 vs. uniprot
Match: A0A7S3M5K7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5K7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.490e-24
Identity = 72/213 (33.80%), Postives = 110/213 (51.64%), Query Frame = 1 
Query:  325 TVDTGSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEDRRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLRRASEVAGGKLGVGGAGSAGPNGGGGAPPVITSVLGNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSMARATRPVMLHFLGPI 963
            TVD  S    + WY V T R  D   + VHRRFR+F  L  Q++  MKGHH+R  LP  P K  K +T+H D SF++DR   LE++L  +  +PHV  +   +AFLG++  +RE+S++++   LG  L                      G  G+ P +  ++       GV PGD+L +VNG   +  +  AA + +    RP+++HF+  I
Sbjct:  133 TVDDQSEFQ-IAWYVVKTTRITDGATSTVHRRFREFAELNSQIKQNMKGHHMRDVLPALPEKPLKQFTDHHDPSFIQDRCIKLERFLIAMTSIPHVGNMVCMKAFLGIMDQVREYSLAFQAPTLGLSLLPRDR----------------QGEPGSSPCVVGMIQKPEVCQGVLPGDQLSRVNGVPLQGATFAAAVARIKSTPRPMIVHFIQVI 328
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7645.18863.1 vs. uniprot
Match: A0A6T9YST3_BIGNA (Hypothetical protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A6T9YST3_BIGNA)

HSP 1 Score: 59.7 bits (143), Expect = 3.280e-6
Identity = 41/139 (29.50%), Postives = 62/139 (44.60%), Query Frame = 1 
Query:  316 VPATVDTGSRVSGVTWYEVHTMR--KADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEDRRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLRRASEV 726
            +P  +   S  S + +Y+V          +  ++ +RF DF  L   V S   GH L S+LP  P K  KLWT+H + SFV+ RR  L +YL  L  +  V        F        +F V  E  E  +  + A+++
Sbjct:  116 LPCAMIRKSGESKIVYYKVEVTNGDPLQKETYVLKKRFSDFEKLDHLVRSSFSGHQLMSNLPPKPSKSVKLWTDHLEKSFVQQRRGELNRYLTKLFNVKKVCANPDFANFFRKPTEEDKFHVDEETDEPDSSKKEAAKI 254
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7645.18863.1 vs. uniprot
Match: A0A7S0CUY1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CUY1_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 8.230e-6
Identity = 27/78 (34.62%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:  415 RRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEDRRKALEQYLKTLLQLPHVSTLDSTRAFLGM 648
            +RF  FY    ++    K    +  LP+FP + SK++T+H D  F+E RRK L++++K L ++P +S  +    FLG+
Sbjct:   67 KRFNAFYGFYRKLSKDFK----KCGLPKFPPRHSKVFTDHNDPVFIEQRRKKLDKFMKELFKIPGMSNQECVLDFLGI 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7645.18863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JS20_9PHAE1.920e-27573.03PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LMZ7_ECTSI6.110e-20796.17PX domain containing protein (Partial) (Fragment) ... [more]
A0A835YSM5_9STRA2.070e-2836.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CLT8_9STRA4.260e-2637.04PX domain-containing protein n=3 Tax=Monodopsidace... [more]
A0A7S3M5K7_9STRA1.490e-2433.80Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6T9YST3_BIGNA3.280e-629.50Hypothetical protein n=1 Tax=Bigelowiella natans T... [more]
A0A7S0CUY1_9EUKA8.230e-634.62Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7645contigEcto-sp13_S_contig7645:781..5905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score107.1
Seed ortholog evalue3e-20
Seed eggNOG ortholog44056.XP_009038266.1
Model size1817
KEGG koko:K06236,ko:K19069
KEGG Pathwayko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-16_001220.1
EC1.1.99.18
Cds size1815
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7645.18863.1prot_Ecto-sp13_S_contig7645.18863.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7645 781..5905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464034.507643-CDS-Ecto-sp13_S_contig7645:780..11881681464034.507643-CDS-Ecto-sp13_S_contig7645:780..1188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7645 781..1188 +
1681464034.5196867-CDS-Ecto-sp13_S_contig7645:1978..20201681464034.5196867-CDS-Ecto-sp13_S_contig7645:1978..2020Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7645 1979..2020 +
1681464034.5298893-CDS-Ecto-sp13_S_contig7645:2694..28441681464034.5298893-CDS-Ecto-sp13_S_contig7645:2694..2844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7645 2695..2844 +
1681464034.5407448-CDS-Ecto-sp13_S_contig7645:3449..36621681464034.5407448-CDS-Ecto-sp13_S_contig7645:3449..3662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7645 3450..3662 +
1681464034.551213-CDS-Ecto-sp13_S_contig7645:4228..43751681464034.551213-CDS-Ecto-sp13_S_contig7645:4228..4375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7645 4229..4375 +
1681464034.5614429-CDS-Ecto-sp13_S_contig7645:4750..50151681464034.5614429-CDS-Ecto-sp13_S_contig7645:4750..5015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7645 4751..5015 +
1681464034.572128-CDS-Ecto-sp13_S_contig7645:5315..59051681464034.572128-CDS-Ecto-sp13_S_contig7645:5315..5905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7645 5316..5905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7645.18863.1

>prot_Ecto-sp13_S_contig7645.18863.1 ID=prot_Ecto-sp13_S_contig7645.18863.1|Name=mRNA_Ecto-sp13_S_contig7645.18863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=605bp
FSLPVFVSPPRQQAFPFLCLFCFAPRKQTFPFLPLFVCHPSKTNIFFSAW
FCVFPQKQTFPFSPPVFVSPLETTPFFLGLFLCHPSKTNLSSLSAKNTEY
EYEVSVPATVDTGSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQ
VESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEDRRKALEQYLKTLLQ
LPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLRRASEVAGGKLGVG
GAGSAGPNGGGGAPPVITSVLGNGRSPPGVCPGDRLFKVNGDSTELMSLE
AAWSSMARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRAPPGRQLPSTG
PQDGGPPLAGSFLRPSGSGGASAAVPAGAAGSVDGSQWSLRGMLPAWSRE
QPSEPGDGSTLRQAPGSSFEGGGSSRGSSAWMPDMSRGSGTSTSSSLPGN
LLGAAGAVPTSPTPREELTGSGDTSNGNSGRGPTDRPARGELFWAAGSGG
ENAVFPGSSGGLSMAASPAWPSEQSNAPLGGAAGAEGSARAGESSGGRNL
AVPTFSSSLDTGARFTSEVGRSGGTFIGTTTLEESGDHHGDEEDDGEEEE
NPFA*
back to top

mRNA from alignment at Ecto-sp13_S_contig7645:781..5905+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7645.18863.1 ID=mRNA_Ecto-sp13_S_contig7645.18863.1|Name=mRNA_Ecto-sp13_S_contig7645.18863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5125bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7645:781..5905+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTCTCTACCTGTTTTCGTGTCACCCCCTCGACAACAAGCGTTTCCTTT
TCTCTGCCTGTTTTGTTTCGCCCCTCGAAAACAAACCTTTCCTTTTCTCC
CCCTGTTTGTGTGTCACCCCTCAAAAACAAACATTTTTTTCTCGGCGTGG
TTTTGTGTCTTCCCTCAAAAACAAACCTTTCCTTTTTCTCCCCCTGTTTT
TGTGTCACCCCTCGAAACCACACCTTTTTTTCTTGGCCTGTTTTTGTGTC
ATCCCTCGAAAACAAACCTTTCCTCTCTCTCCGCCAAGAACACCGAGTAC
GAGTACGAAGTCTCAGTACCCGCGACCGTGGACACCGGCAGCAGGGTTAG
CGGGGTAACCTGGTACGAGGTACACACCATGCGGAAGGCGGACAGCAAGG
GGACCCTGGTGAGAGCCGGTGTAACGGCCGGGGACCGGGAACGCGCTCTG
TCTTGTCACTTGGGGGGGGGGGGGCTCAACAAGTTATCGAGTTTTGTTTG
ACGGCATAGGTGACCGATCTCACCGTGTAGGACACCGGAAATTATCCTGA
TGATAGATGACCACATGAAAAGCTCCCTTTGCTCCTTGGCTTTGCAGCTG
ATACTCGAATGTTATACCTCGTTTCCTTCAACGTGTCACAATTACTCCTG
TCGTTGTTGCTTTTCAAGTCTCCCTTCGTTTTTTTTGTTGGGATGGTTTG
AGATACCAGGTGAAAATGTGCTCGTGGTTGGGGGTAATTAGTGGCTCTCA
TGAACTGATCGCCTTGAGTGATGTCTGCGAATATGCCGGCACTCGTTCCT
TCCGTCGGCCGTGAGTTGGTTGCGATGGACTCAATTCCATTTTGTTTCTT
GTCCTCGCGGACCCGCCGCAGCAGAGCCTGACCGTGCACCCTTGTTTTGG
CCTACAGAATGCATAATACCATATTCGAATCTGGAACGTGTTGCCGTGGG
TTGCCCGGAGGCTGCACGGACTGCGCATGGCAGCGACCCCGCCCGAAACT
CGGGTCCACGCGTGGCCGGGTTGATACAATGTTATTAGGTACAATAGTTT
GCGATCTCATCGAGGTGTCGTTGTGGCCATCCTTTGTTAAAAGCACTACC
GACTACTGTACGGACACATAACGCCGCCTCCTTTTCGGGATGGCTGTTCA
TAAATCCGTGAACTCATAAAGACAAAACAACGCGCAAATTCCGAACAGGT
TCACCGGAGGTTTCGAGACTTTTACGCGCTTCAGGAGCAGGTGAGGGCAA
GGAATGCGGCGTAGTAGACTGGAGGGGGGGGGATCGGGGACAAACAATCG
TGCTCGGTGTACTATATTTCTCGCTTTGTGGTGGGCTCCGTGTATGTTTG
CACCTTTCTGCTCTCTTCGTTCCTGTACTGTTTCGAGGAGAGTATCGATG
CTTGGGGCTGTGTCCTTCTCGAGGACGCCGCTCATCATCAGCACACACTT
TTCTTAGCTGTCTCAGGGAGGCATGCGTTCGAACAGCCCTGGTTGCAGCC
TTATCAACGGTGGTTGTTGTGTGTACGGGTGATGGAGAGAATGGTAGGGC
TTGGAGAAAAGGGAGCCAAACTCTTGAGGGGGCGAGCTTGACATGGACGA
GAGCACTACATGGTTCTGTTTCTCTCTGAGTGGCATCACCAGTTTCGAGA
GGGGTCGGGACAGGCCGAAAACATTTTCATAGATCCGTTTTTCTCTTGAA
CTACCATAGAGTACTCCGATAAATCCGTTTTTCTCTTGAACTACCATAGA
ATACTCCGAACTATATGCATTTCTAACGGCCGTGATAACCCACCTTTCCT
CTCTGAAATCAACACGTTCACTTGCATGACCTCTCTTGAACCGTCGCTTT
TACTGCCATATCCCATGTGCGGCAACCATCTGGTGCTTGATCGATCGGGT
CTGCCGTACCGCAGGTGGAGTCGCTCATGAAGGGCCACCACCTGCGGTCG
TCCCTGCCCAGGTTCCCGGGCAAGAAGTCCAAGCTGTGGACCAACCACGG
CGACTTGTCCTTTGTCGAGGACAGAAGAAAGGCCTTGGAGCAGTACCTCA
AGACTCTGCTACAGGTGAAGAAAATGCCGGAGGGGGGGGGGGGGGGGCGA
ACTTAGCCCGGACGCGAGGGGTGGCCGGTGAAGGGGGACTCGTTGAAATG
CCGGGACGGAGTGATATGCCGTGCGATCGCCGGCCCAGGCTATATAAGGA
TGAATCAGAAGCTGGTCATCATCTTTGCGACCGTGGGGTGGGGGGGGGAT
ACGTTAGCAGCAAGTGGGGGCGTGGGCGGTGTGTGGTGACGCGATAGCAT
TTGCGCCGCGTCTCCCCGTGCAGCAGGGGAGTACGATTGTGCTGTTATGT
TTGTTTTGGCAGCGTGCCCTACCTCTGCGTCCCGTTTCTGCCGTGCTCTT
GGTCCCGCGAGGTCCGTGGCTTCTGGTCGGTTTAGGCTGGCTGCGCTCGC
GGGGTATGCGATGACAACCGTTTTTTGCGTACTATTCGTACTCTGATTTC
CATCTCAGCATCTACACAGGCTAGTTTTTCGCCATTTTAGTAGGAGTACA
TGTGTGCTGTCCCTTCTCCGCCGTTCGCGTAGTGCCCCCCCCCCCACACG
CATCTCACGTATCTTCGTGGCACGCCAAACGTCCTCCTCGAAATCGACAA
CCACGCCACGCCACGCCAGCTTCCTCACGTGAGCACCCTGGACTCGACGC
GAGCATTCCTCGGTATGGTGGGAAACTTGCGAGAGTTCTCGGTGTCGTGG
GAGGGCAAGGAGCTCGGCGCCAAGCTTAGGCGAGCCTCGGAGGTGGCGGG
CGGAAAGCTGGGCGTCGGGGGAGCAGGCTCGGCCGGCCCGAACGGGGGCG
GAGGGGCGCCGCCGGTGATCACCTCTGTGCTGGTGAGAGACAGGGCCTGT
TGGCAGCAGTAGTACCCAAGCTACGACAGTTGAGCGCCCTATTCGCCAGT
GACTTCCTCTGTGCCGGTGAGAGGCAGGGCCTGTTAGCAGCGGTAGTACC
CAAGCTGTGACAGTTGGGATTGAGCGCGTTATGTGTGTGTGCTGGTGCCG
GCAATCAACGTAGCTAGCAGACACGTGGGCACTTTATCGCAGAGGTGGGA
GTAAGAGGGTGGAAGGAAGGGAGGGATAAGGAGCACCATGGCTGAGGATT
GACTGAAACGAAGACGGTTTGTTATCGCAGTACTGCTGTGCAATATATAG
CCGTCTTTACTTGCGGATACCCCTGCCCCCGCTGCCCTAATTGGGCCTGT
ATAAGGCTTGCCGTTCATAGCGTTACTCGCTTCACAAGTGTATTGCAATG
TGAATGTTGTTGAAACATGCGGCCACTCATTGGCTCTGTTTCTTTATGCT
CGTGAGCCCCCCCCCCCCGCCTCCTCGCTCTTCAACTTTTCCTCACCGCT
ATACTTGATGTAACGTCCCCTATCCCACCTCTCTCTATGCTGGGAAAGGG
CAACGGAAGATCGCCACCGGGGGTCTGTCCGGGAGACCGCCTGTTCAAGG
TTAATGGAGACTCGACGGAGCTCATGTCGCTGGAAGCCGCCTGGAGTTCT
ATGGCGCGGGCCACGCGGCCGGTGATGCTACATTTCTTGGGCCCGGTAAG
AGGGCTTGCTGTGAGGATGAATGCAAACGGGGGCAGAGTGGCCTCTGGAC
ACACCGAAGTGTGTTTTGTCCCTTGTCGGCACGCTCCCCTTAGAGCATGC
CACTCTTGAGATATGTCGCGTCATGCCTCTCGTGAAACGCAAACGCTTGA
TTTGCATCCCCCCCCCCTGTAGCGTCCTATCCGAACCTTGGCGTCTTTGC
ATTTGGATCTCATCACTTGTTTGCGCTGACCTCATCGTCCTACTACTGTG
CCCACAACGAAGCCTCAATCAAAGCCAACACCCGTTTTTAACCTTGCCCG
TCCGTGCCCATACCTGTCCCTCATTCCCACTGATTGTTTGCTCCATGGAT
TTCCATCTGTTGGCTCACAGATCCTCCGAATGGATTCGACGCTGGCCCCG
CTTCCTGAGGCGTTTCTACGTCACCGCGCCCCCCCGGGGCGGCAACTCCC
ATCCACGGGGCCCCAAGACGGCGGACCTCCGCTCGCCGGAAGCTTCCTGC
GCCCCAGCGGGAGCGGCGGCGCTTCCGCCGCGGTCCCCGCCGGCGCTGCT
GGCAGTGTTGACGGTAGCCAGTGGAGCCTAAGAGGCATGCTGCCGGCATG
GAGCCGGGAACAGCCGTCGGAGCCCGGGGATGGTAGTGCACTGGCCCCTG
GCGGCTCCGCCGCCCCTGGGCAAGGTTGGAATCCCCACGAGAATCCGAGG
GCGCGAATAGGGAACGGGGTGGGTCGGGGTGGCGCGGTGGGGCCTTTCGG
AAACGGTACGGGAGCGGCGGCAGCCGGCCGGACCAACCCGGCGAACTCCA
GCCTCTTCGGGGGGGACGCGACGGCCGGCGCTAGCGGAGGCGGCATGGGT
GGTGGGGCGAAGAAAGAGAGTTTGTTCGACAGTTGGCGATCACCGGGAGC
GGCGGCGGGGGCGGGGCGGGGGGCGGGGATGGGAGGCACGTTGCGTCAAG
CCCCGGGGAGTTCGTTCGAAGGCGGTGGAAGTTCTCGGGGAAGCTCGGCT
TGGATGCCGGACATGTCGCGAGGCTCGGGAACGTCGACCAGTTCCTCACT
TCCGGGCAATTTGTTGGGGGCAGCAGGAGCGGTACCGACATCCCCAACCC
CTCGAGAAGAACTAACGGGTAGCGGCGACACCTCTAATGGGAACTCGGGA
AGAGGGCCTACGGATCGCCCGGCGCGAGGAGAGCTATTTTGGGCGGCAGG
ATCTGGTGGCGAGAACGCGGTTTTTCCAGGGAGTAGTGGCGGGTTATCCA
TGGCGGCGTCGCCAGCATGGCCGTCCGAGCAATCGAACGCGCCACTGGGG
GGCGCGGCCGGGGCAGAGGGAAGCGCAAGAGCTGGCGAGAGCAGCGGCGG
GAGAAATCTCGCTGTCCCAACGTTTTCTTCTAGTCTTGATACGGGAGCGA
GATTCACGTCGGAGGTGGGACGATCTGGTGGAACGTTCATTGGCACGACC
ACCCTCGAGGAGAGTGGTGACCACCATGGGGATGAGGAGGACGACGGCGA
AGAGGAGGAGAATCCCTTTGCGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7645:781..5905+

>mRNA_Ecto-sp13_S_contig7645.18863.1 ID=mRNA_Ecto-sp13_S_contig7645.18863.1|Name=mRNA_Ecto-sp13_S_contig7645.18863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1815bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7645:781..5905+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTCTCTACCTGTTTTCGTGTCACCCCCTCGACAACAAGCGTTTCCTTT
TCTCTGCCTGTTTTGTTTCGCCCCTCGAAAACAAACCTTTCCTTTTCTCC
CCCTGTTTGTGTGTCACCCCTCAAAAACAAACATTTTTTTCTCGGCGTGG
TTTTGTGTCTTCCCTCAAAAACAAACCTTTCCTTTTTCTCCCCCTGTTTT
TGTGTCACCCCTCGAAACCACACCTTTTTTTCTTGGCCTGTTTTTGTGTC
ATCCCTCGAAAACAAACCTTTCCTCTCTCTCCGCCAAGAACACCGAGTAC
GAGTACGAAGTCTCAGTACCCGCGACCGTGGACACCGGCAGCAGGGTTAG
CGGGGTAACCTGGTACGAGGTACACACCATGCGGAAGGCGGACAGCAAGG
GGACCCTGGTTCACCGGAGGTTTCGAGACTTTTACGCGCTTCAGGAGCAG
GTGGAGTCGCTCATGAAGGGCCACCACCTGCGGTCGTCCCTGCCCAGGTT
CCCGGGCAAGAAGTCCAAGCTGTGGACCAACCACGGCGACTTGTCCTTTG
TCGAGGACAGAAGAAAGGCCTTGGAGCAGTACCTCAAGACTCTGCTACAG
CTTCCTCACGTGAGCACCCTGGACTCGACGCGAGCATTCCTCGGTATGGT
GGGAAACTTGCGAGAGTTCTCGGTGTCGTGGGAGGGCAAGGAGCTCGGCG
CCAAGCTTAGGCGAGCCTCGGAGGTGGCGGGCGGAAAGCTGGGCGTCGGG
GGAGCAGGCTCGGCCGGCCCGAACGGGGGCGGAGGGGCGCCGCCGGTGAT
CACCTCTGTGCTGGGCAACGGAAGATCGCCACCGGGGGTCTGTCCGGGAG
ACCGCCTGTTCAAGGTTAATGGAGACTCGACGGAGCTCATGTCGCTGGAA
GCCGCCTGGAGTTCTATGGCGCGGGCCACGCGGCCGGTGATGCTACATTT
CTTGGGCCCGATCCTCCGAATGGATTCGACGCTGGCCCCGCTTCCTGAGG
CGTTTCTACGTCACCGCGCCCCCCCGGGGCGGCAACTCCCATCCACGGGG
CCCCAAGACGGCGGACCTCCGCTCGCCGGAAGCTTCCTGCGCCCCAGCGG
GAGCGGCGGCGCTTCCGCCGCGGTCCCCGCCGGCGCTGCTGGCAGTGTTG
ACGGTAGCCAGTGGAGCCTAAGAGGCATGCTGCCGGCATGGAGCCGGGAA
CAGCCGTCGGAGCCCGGGGATGGTAGCACGTTGCGTCAAGCCCCGGGGAG
TTCGTTCGAAGGCGGTGGAAGTTCTCGGGGAAGCTCGGCTTGGATGCCGG
ACATGTCGCGAGGCTCGGGAACGTCGACCAGTTCCTCACTTCCGGGCAAT
TTGTTGGGGGCAGCAGGAGCGGTACCGACATCCCCAACCCCTCGAGAAGA
ACTAACGGGTAGCGGCGACACCTCTAATGGGAACTCGGGAAGAGGGCCTA
CGGATCGCCCGGCGCGAGGAGAGCTATTTTGGGCGGCAGGATCTGGTGGC
GAGAACGCGGTTTTTCCAGGGAGTAGTGGCGGGTTATCCATGGCGGCGTC
GCCAGCATGGCCGTCCGAGCAATCGAACGCGCCACTGGGGGGCGCGGCCG
GGGCAGAGGGAAGCGCAAGAGCTGGCGAGAGCAGCGGCGGGAGAAATCTC
GCTGTCCCAACGTTTTCTTCTAGTCTTGATACGGGAGCGAGATTCACGTC
GGAGGTGGGACGATCTGGTGGAACGTTCATTGGCACGACCACCCTCGAGG
AGAGTGGTGACCACCATGGGGATGAGGAGGACGACGGCGAAGAGGAGGAG
AATCCCTTTGCGTAG
back to top