mRNA_Ecto-sp13_S_contig763.18845.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig763.18845.1 vs. uniprot
Match: D7FSL6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL6_ECTSI) HSP 1 Score: 710 bits (1833), Expect = 1.690e-238 Identity = 593/691 (85.82%), Postives = 603/691 (87.26%), Query Frame = 1
Query: 406 MAQTDRAALVALYVATNGTSWKNNENWSTETNLSLWHGVKVNDQGRVVDLNLGYNNLRGPIPSEIGDLVAMTGLYLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTHLFAHCPIPPXXXXXXXXXXXXXXXXQLSGPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGLSLPQGAQYPRTEFYKWMHREDLGGDLASAPAYRNVVPDLEGSSTPFPTTEHQGVLLEAPVSSDGPDCLEFGDYADVLVERMTDPAAWPVGVGVYAQWGAGKSSLLQQIIDKLKSAPTPSPEWWFIRWLWTTTGGSVVYALWAGLTSAVSCRCCRSPARDDRVNDVEDGHGSTSAVKPARVTSVVASFDAWLFADSKVLWAVLISEIFCQVEEHPCFGKGAVRATRVRHAVTSSTCSDWCLVIFTTVVVAGVVAAAKLAAEQIANMQEVLEQVVATAGLTAVPISLLLWIFKVLPVVFKGQGELIVEEAQEMGDESVGTAHLGFMADVRDELGVLLGMLEQKSTKDDRYMLVVSIDNLDRCPHRQIVKVLEAVHLLLEKDNVNVAVMLALDPRVIIAAIEQDMGDGIRRE 2478
MAQTDRAALV LYVATNGTSWKNN+NWSTE+NLSLWHGVKVNDQGRVVDL+LGYNNLRGPIP EIGDLVAMTGLYLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IGLS SS PFPT +HQGVLLEAPVSS+GPDCLEFGDYADVLVERMTDPAAWPVGVGVYAQWGAGKS APTPSPEWWFIRWLWTTTGGSVVYALWAGL SAVSCRCCRSPARDDRVNDVEDG GSTSA +PARVTSVVASFDAWLFADSKVLWAVLISEIF QVEEHPCFGKGAVRATRVRHAVTSSTCSDWCLVIFT V+VAGVVAAAKLAAEQIANMQEVLEQVVATAGL AVPISLLLWIFKVLPVVFKGQGELIVEEAQ MGDESVG AHLGFMADVRDEL VLLGMLEQKSTK+DRYMLVVSIDNLDRCPHRQIVKVLEAVHLLLEKDNVNVAVMLALDPRVIIAAIEQDMG+GIR+E
Sbjct: 1 MAQTDRAALVVLYVATNGTSWKNNDNWSTESNLSLWHGVKVNDQGRVVDLSLGYNNLRGPIPPEIGDLVAMTGLYLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIGLSR---------------------------------------SSRPFPTKDHQGVLLEAPVSSEGPDCLEFGDYADVLVERMTDPAAWPVGVGVYAQWGAGKS------------APTPSPEWWFIRWLWTTTGGSVVYALWAGLASAVSCRCCRSPARDDRVNDVEDGLGSTSADQPARVTSVVASFDAWLFADSKVLWAVLISEIFHQVEEHPCFGKGAVRATRVRHAVTSSTCSDWCLVIFTAVIVAGVVAAAKLAAEQIANMQEVLEQVVATAGLAAVPISLLLWIFKVLPVVFKGQGELIVEEAQSMGDESVGIAHLGFMADVRDELEVLLGMLEQKSTKEDRYMLVVSIDNLDRCPHRQIVKVLEAVHLLLEKDNVNVAVMLALDPRVIIAAIEQDMGEGIRKE 632
BLAST of mRNA_Ecto-sp13_S_contig763.18845.1 vs. uniprot
Match: A0A6H5JLB7_9PHAE (KAP NTPase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB7_9PHAE) HSP 1 Score: 486 bits (1252), Expect = 5.830e-150 Identity = 339/807 (42.01%), Postives = 443/807 (54.89%), Query Frame = 1
Query: 1246 GLSLPQGAQYPRTEFYKWMHREDLGG--DLASAPAYRNVVPDL--EGSSTPFPTTEHQ-----GVLLEA---------PVSSDGPDCLEFGDYADVLVERMTDPAAWPVGVGVYAQWGAGKSSLLQQIIDKLKSAPTPSPEWWFIRWLWTTTGGSVVYALWAGLTSAVSCRCCRSPARDDRVNDVEDGHGSTSAVKPARVTSVVASFDAWLFADSKVLWAVLISEIFCQVEEHPCFGKGAVRATRVRHAVTSSTCSDWCLVIFTTVVVAGVVAAAKLAAEQIANMQEVLEQVVATAGLTAVPISLLLWIFKVLPVVFKGQGELIVEEAQEMGDESVGTAHLGFMADVRDELGVLLGMLEQKSTKDDRYMLVVSIDNLDRCPHRQIVKVLEAVHLLLEKDNVNVAVMLALDPRVIIAAIEQDMGDGIRREVSGAEYLDKIIHWPFCIPSGTEAERLSLLRSWL-------KNQGNEKSRSETRRADS---------------NVRVVEVNPDQPGEEKFSQGDHHVSPNRESV--------ESSEKAQINKSSEQR-SGGTDAESEEKETNDAGTSTRVGASCASDGGGRAPIASAGAAAPPLQSQMSNYGVQTDEEVHELENMIKAIAPTPRKAKRVYNMYSIQRALARRRADKNNGFKFTRDRARKLLRWTILSEFWPFHTACLVAVAKKS---------KESGTLANLYETKGAKFLSDMLTDKRSSEGDPASMTDANTSFRAEARRLMGFEESDEAFVRVLGFAPDLLVEDFDE--DKLMLLRHSFNLNPAMVSRVVAWDRARW 3486
GL LP G YP F KWM R +L AP + L EG FP E Q G L+ A P S + D L+F YA+VLVER+ DP WPV +G+YAQWGAGKSSLL+ I+++ + S F+R+L + GSV WAGL + C P DD V P VT ++ASFDAWLFADS VLWA L+S+IF QVE HPCFGKGAVR+ R+R + T C V+V G+ A L E + VL + +A GL VPIS++LW K LP VF+GQGE+I+ +A+ M ESVG+A LGFMADV++E+ +LL M+ +ST+ ++ LVVSIDNLDRCPHR IVKVLEAVHLLLE+D NV V+LALDPRVII+AIE D+G +R+EVSG+EYLDKIIH PFC+P GT+ +RL+L+ SWL K+ N E S +VR G+ + GD S SV E +A +S+EQ + ++S+ + D T +R ++ A+D + S + +TDE + K I TPRK KR+ N+Y IQRALA+ ++ + F+ T ARKLLRW L EFWPF TACLV AK + +S L +Y + +K + ML + + + +P S R+E RRL+G +ESD+AF+RVL P L V DF E D L LLR SFNLNPAMV+ V AW R+ +
Sbjct: 79 GLQLPSGTDYPGNAFKKWMDRRTKVSISNLKIAPPTKATWASLVAEGDQGSFPPREEQRLHREGALVGADQQEEKENGPSSLELQDKLDFDKYAEVLVERLRDPDTWPVSLGIYAQWGAGKSSLLRLILERFERITKVSEPSCFVRFLRSNILGSVFLEAWAGLRGCCVAKLC--PPTDDTVP------------VPVPVTCILASFDAWLFADSDVLWAFLVSKIFDQVEAHPCFGKGAVRSFRLRKTSSEITMERLCFAAMGAVIVVGLAVALGLIIEATGGLDNVLTKALAFVGLAGVPISIVLWTIKALPAVFQGQGEVILNKAKSM-HESVGSARLGFMADVQEEIQILLDMITDRSTEKMKFALVVSIDNLDRCPHRNIVKVLEAVHLLLERDQTNVVVILALDPRVIISAIEADLGPEVRKEVSGSEYLDKIIHVPFCVPFGTQKQRLTLIDSWLGVTKGVTKSDENGSKTLEGGDGSSLCEPSSGKRPEIGTGDVRAASERAALMGDGSAAGGDPRGSAIGASVGGTCSMPEEVGGRAAHQRSAEQIVNPNPRSDSKTPDLEDQTTLSRSSSTAATDSRNSLRNVAGDDQVDSTGSSPFHIPGETDE----FHMLCKEIVTTPRKMKRILNIYGIQRALAK---EQTSDFRSTS--ARKLLRWAALCEFWPFRTACLVGSAKLAIDTREEDLGDKSAPLQFVYMERTSKVMKTMLNETQKVDDEPRS----GGFSRSEVRRLLGMDESDQAFLRVLQATPLLCVGDFMEGQDCLGLLRFSFNLNPAMVATVGAWVRSEF 857
BLAST of mRNA_Ecto-sp13_S_contig763.18845.1 vs. uniprot
Match: D7FSL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL5_ECTSI) HSP 1 Score: 303 bits (776), Expect = 7.560e-92 Identity = 152/156 (97.44%), Postives = 155/156 (99.36%), Query Frame = 1
Query: 3019 YSIQRALARRRADKNNGFKFTRDRARKLLRWTILSEFWPFHTACLVAVAKKSKESGTLANLYETKGAKFLSDMLTDKRSSEGDPASMTDANTSFRAEARRLMGFEESDEAFVRVLGFAPDLLVEDFDEDKLMLLRHSFNLNPAMVSRVVAWDRARW 3486
YSIQRALARRRADKNNGFKFTRDRARKLLRWTILSEFWPFHTACLVAVAKKSKE+GTLANLYETKGAKFLSDMLTDKRSS+GD ASMTDANTSFRAEARRLMGFEESDEAFVRVLGFAPDLLVEDFDEDKLMLLRHSFNLNPAMV+RVVAWDRARW
Sbjct: 7 YSIQRALARRRADKNNGFKFTRDRARKLLRWTILSEFWPFHTACLVAVAKKSKETGTLANLYETKGAKFLSDMLTDKRSSDGDQASMTDANTSFRAEARRLMGFEESDEAFVRVLGFAPDLLVEDFDEDKLMLLRHSFNLNPAMVARVVAWDRARW 162
BLAST of mRNA_Ecto-sp13_S_contig763.18845.1 vs. uniprot
Match: A0A6H5KKB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB9_9PHAE) HSP 1 Score: 221 bits (563), Expect = 1.930e-63 Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 1
Query: 3133 PFHTACLVAVAKKSKESGTLANLYETKGAKFLSDMLTDKRSSEGDPASMTDANTSFRAEARRLMGFEESDEAFVRVLGFAPDLLVEDFDEDKLMLLRHSFNLNPAMVSRVVAWDRARW 3486
PFHTACLVAVAKKSKE+GTLANLYETKGAKFLSDMLTDKRSS+G PA M DANTSFRAEARRLMGFEESDEAFVRV GFAPDLLVEDFDEDKLMLLRHSFNLNPAMV+RVVAWDR RW
Sbjct: 5 PFHTACLVAVAKKSKETGTLANLYETKGAKFLSDMLTDKRSSDGSPAFMIDANTSFRAEARRLMGFEESDEAFVRVSGFAPDLLVEDFDEDKLMLLRHSFNLNPAMVARVVAWDRGRW 122
BLAST of mRNA_Ecto-sp13_S_contig763.18845.1 vs. uniprot
Match: A0A6H5K326_9PHAE (KAP NTPase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K326_9PHAE) HSP 1 Score: 197 bits (501), Expect = 3.330e-52 Identity = 137/334 (41.02%), Postives = 192/334 (57.49%), Query Frame = 1
Query: 1618 WFIRWLWTTTGGSVVYALWAGLTSAVSCRCCRSPARDDRVNDVEDGHGSTSAVKPA----------RVTSVVASFDAWLFADSKVLWAVLISEIFCQVEEHPCFGKGAVRATRVRHAVTSSTCSDWCLVIFTTVVVAGVVAAA---KLAAEQIANMQEVLEQVVATAGLTAVPISLLLWIFKVLPVVFKGQGELIVEEAQEMGDESVGTAHLGFMADVRDELGVLLGMLEQKSTKDDRYMLVVSIDNLDRCPHRQIVKVLEAVHLLLEKDNVNVAVMLALDPRVIIAAIEQDMGDGIRREVSGAEYLDKIIHWPFCIPSGTEAERLSLLRSWLK 2580
WF RW+W G L T+ ++ R+ R D +D D S++ ++ + T VVASFDAWL+AD+++LWA L+ +F +VE FGK +VR RVR+A T D C ++ G VA A ++ E + N+ G VP +VL + KG+GE I+ +A+ MG +SVG++HLGFMA+V +EL +LL M++ T+ +++ LVVSIDNLDRCPH IV+VL+AVH LLEK N ++LALD RV+IAAI M D +R+ VSG+EYL+KII+ PF IP GT +R L LK
Sbjct: 22 WF-RWIWRFFGRFAHGVLLGDQTALLNI--VRNKLRSD--DDGNDNDQSSTDIEKQQTKRPRSDGKKTTCVVASFDAWLYADTQLLWARLLCGVFVKVEAR--FGKFSVRRARVRNAFRDPTL-DVCAAAALATLLVGAVAQAIADEVGWEDVGNV----------LGYGGVP--------RVLYIAIKGRGENILAQARSMG-KSVGSSHLGFMAEVEEELQLLLDMIKDMGTEKEKFALVVSIDNLDRCPHDDIVQVLQAVHFLLEKPGANFILILALDSRVVIAAIGAGMDDLVRQRVSGSEYLEKIIYVPFFIPDGTMEDRKILSDVMLK 328
BLAST of mRNA_Ecto-sp13_S_contig763.18845.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI) HSP 1 Score: 107 bits (267), Expect = 2.640e-21 Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 403 TMAQTDRAALVALYVATNGTSWKNNENWSTETNLSLWHGVKVNDQGRVVDLNLGYNNLRGPIPSEIGDL 609
TMAQTDR ALVALY AT G WKNN+NW+T LS WHGV+VN QGRVV L+LG+NNLRGPIP E+G L
Sbjct: 70 TMAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRGPIPKELGAL 138
BLAST of mRNA_Ecto-sp13_S_contig763.18845.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 7.960e-19 Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 406 MAQTDRAALVALYVATNGTSWKNNENWSTETNLSLWHGVKVNDQGRVVDLNLGYNNLRGPIPSEIGDLVAMTGLYLK 636
MA DR ALVAL+ +T G W +NW+T+ + + W GVKVNDQGRVVD++LG NNL+GPIP E+G L + L L+
Sbjct: 1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVKVNDQGRVVDVDLGSNNLQGPIPKELGALAKLASLCLR 77
BLAST of mRNA_Ecto-sp13_S_contig763.18845.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 2.030e-18 Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 403 TMAQTDRAALVALYVATNGTSWKNNENWSTETNLSLWHGVKVNDQGRVVDLNLGYNNLRGPIPSEIGDLVAMTGLYL 633
T TDRAALVAL+ AT G +WK N W+T+ L W+GV+VND GRVV L+L YNNL+G IP ++GDL A+ L L
Sbjct: 7 TKMSTDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKGHIPRQLGDLGALMTLNL 83
BLAST of mRNA_Ecto-sp13_S_contig763.18845.1 vs. uniprot
Match: H2YLT8_CIOSA (KAP NTPase domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YLT8_CIOSA) HSP 1 Score: 92.8 bits (229), Expect = 3.200e-17 Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 2206 AHLGFMADVRDELGVLLGMLE-QKSTKDDRYMLVVSIDNLDRCPHRQIVKVLEAVHLLLEKDNVNVAVMLALDPRVIIAAIEQDMGDGI-RREVSGAEYLDKIIHWPFCIP 2532
A LGFM V+DE+ ++ ++ + T Y +++SID+LDRCPH ++ VLEAV++LL + ++ALD RV + IE+DMG + + V+G EYL KII+ PFC+P
Sbjct: 39 AELGFMNKVKDEVKIIEKLVRCLRFTHSKNYKIIISIDDLDRCPHEKVKSVLEAVNILLSDRSSPFVCLIALDSRVAVKCIEEDMGAALLKANVNGHEYLKKIINLPFCLP 149
BLAST of mRNA_Ecto-sp13_S_contig763.18845.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 4.980e-17 Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 406 MAQTDRAALVALYVATNGTSWKNNENWSTETNLSLWHGVKVNDQGRVVDLNLGYNNLRGPIPSEIGDL 609
MAQTDR ALVALY AT G +W+ ++NW T+ +L WHGV VNDQGRVV L L NNL G IP+ +G L
Sbjct: 1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQL 68 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig763.18845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig763.18845.1 >prot_Ecto-sp13_S_contig763.18845.1 ID=prot_Ecto-sp13_S_contig763.18845.1|Name=mRNA_Ecto-sp13_S_contig763.18845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1126bp MRKWGRRYLHYVNGHRIRHANLTTQPHVVCLPNSTAFARPLLACKVDSGKback to top mRNA from alignment at Ecto-sp13_S_contig763:1002..12006+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig763.18845.1 ID=mRNA_Ecto-sp13_S_contig763.18845.1|Name=mRNA_Ecto-sp13_S_contig763.18845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=11005bp|location=Sequence derived from alignment at Ecto-sp13_S_contig763:1002..12006+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig763:1002..12006+ >mRNA_Ecto-sp13_S_contig763.18845.1 ID=mRNA_Ecto-sp13_S_contig763.18845.1|Name=mRNA_Ecto-sp13_S_contig763.18845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig763:1002..12006+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |