mRNA_Ecto-sp13_S_contig7629.18844.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7629.18844.1
Unique NamemRNA_Ecto-sp13_S_contig7629.18844.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7629.18844.1 vs. uniprot
Match: D8LFJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFJ5_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 5.260e-9
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = -1 
Query:  163 GGVLEPVGTGFRNSCLRDEPGKNGTTL--SLRHAA 261
            GGVLEPVGTGFRNSCLRDEPG+NGTTL  S R AA
Sbjct:  350 GGVLEPVGTGFRNSCLRDEPGENGTTLYRSKRRAA 384
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7629.18844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFJ5_ECTSI5.260e-985.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7629contigEcto-sp13_S_contig7629:4519..5230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size262
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464032.7123582-CDS-Ecto-sp13_S_contig7629:4518..46991681464032.7123582-CDS-Ecto-sp13_S_contig7629:4518..4699Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7629 4519..4699 +
1681464032.7239587-CDS-Ecto-sp13_S_contig7629:5150..51851681464032.7239587-CDS-Ecto-sp13_S_contig7629:5150..5185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7629 5151..5185 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464032.7335978-UTR-Ecto-sp13_S_contig7629:5185..52301681464032.7335978-UTR-Ecto-sp13_S_contig7629:5185..5230Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7629 5186..5230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7629.18844.1prot_Ecto-sp13_S_contig7629.18844.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7629 4519..5185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7629.18844.1

>prot_Ecto-sp13_S_contig7629.18844.1 ID=prot_Ecto-sp13_S_contig7629.18844.1|Name=mRNA_Ecto-sp13_S_contig7629.18844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
SSLDGAASDGTLATYTTGLGVRNPISCIGARKERSHHDAKWGKTAVHASA
VAGIGGMAKRKRGAVLSRFVA*
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mRNA from alignment at Ecto-sp13_S_contig7629:4519..5230+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7629.18844.1 ID=mRNA_Ecto-sp13_S_contig7629.18844.1|Name=mRNA_Ecto-sp13_S_contig7629.18844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=712bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7629:4519..5230+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCATCGCTAGACGGCGCCGCTTCCGACGGAACGTTGGCGACGTACACGAC
GGGTTTGGGGGTCAGGAACCCAATCTCCTGCATCGGTGCGAGGAAGGAGC
GGTCGCACCATGATGCAAAGTGGGGAAAGACGGCCGTGCACGCTTCAGCA
GTTGCGGGAATAGGCGGCATGGCGAAGCGAAGTGAGTCGTGAACTGCCAA
TACGTAGCCTGTGGGGTTATCCATGATGGGGTTGACAGTCCGCCAAGTGT
CGGCCTCGTTATCAACAACAGGTTTAGAAGTCCAGACGGCTATCTAACTA
GAGAAAATTCCAAGGGTGTGTTCAGTATGGTACGTACCGACGTGTACCGC
CGGTATTTCCGCCGGCATATACCCTACCGAGCGTCTCGGTACCCTTCGGT
ATAGCCCTCCATACCTACCGAAAATCCCGGTACGCCTCGGTACAGCCCTT
CATACCCTACCAAGCGTACCCGTACGGTAACGAACACACCCTTGGAAAAT
TCTTTCATCAGCTAGGCTGACTCGTTTGGTCACCGGCCACGCGAGCAGGG
CATCGTCCCTGTTTCGGCTGTCAAACGGGGCAAGGTAGCCCTCGCTCATA
CCTCAATCGCCGCCCTCCGCTTGCTCCGGTAGAGCGTGGTGCCGTTCTTT
CCCGGTTCGTCGCGTAAGCAGCTGTTTCGGAACCCGGTTCCAACGGGCTC
CAGCACGCCACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7629:4519..5230+

>mRNA_Ecto-sp13_S_contig7629.18844.1 ID=mRNA_Ecto-sp13_S_contig7629.18844.1|Name=mRNA_Ecto-sp13_S_contig7629.18844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7629:4519..5230+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCATCGCTAGACGGCGCCGCTTCCGACGGAACGTTGGCGACGTACACGAC
GGGTTTGGGGGTCAGGAACCCAATCTCCTGCATCGGTGCGAGGAAGGAGC
GGTCGCACCATGATGCAAAGTGGGGAAAGACGGCCGTGCACGCTTCAGCA
GTTGCGGGAATAGGCGGCATGGCGAAGCGAAAGCGTGGTGCCGTTCTTTC
CCGGTTCGTCGCGTAA
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