mRNA_Ecto-sp13_S_contig76268.18841.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76268.18841.1
Unique NamemRNA_Ecto-sp13_S_contig76268.18841.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76268.18841.1 vs. uniprot
Match: A0A6H5KKD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD4_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.800e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 3 
Query:   36 QASGSDHSVSFNAGAGPGSSTTGGSEWWRRGADGRYSESET 158
            QASGSD SVSFNAGAGPGSSTTGGSEWWRRGADGRYSESET
Sbjct: 1244 QASGSDLSVSFNAGAGPGSSTTGGSEWWRRGADGRYSESET 1284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76268.18841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKD4_9PHAE2.800e-1497.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76268contigEcto-sp13_S_contig76268:195..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size309
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464032.5601308-CDS-Ecto-sp13_S_contig76268:194..3041681464032.5601308-CDS-Ecto-sp13_S_contig76268:194..304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76268 195..304 -
1681464032.570408-CDS-Ecto-sp13_S_contig76268:329..5281681464032.570408-CDS-Ecto-sp13_S_contig76268:329..528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76268 330..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76268.18841.1prot_Ecto-sp13_S_contig76268.18841.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76268 195..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76268.18841.1

>prot_Ecto-sp13_S_contig76268.18841.1 ID=prot_Ecto-sp13_S_contig76268.18841.1|Name=mRNA_Ecto-sp13_S_contig76268.18841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
GPQQQAPPEAAAKLAVVTTRSPSTRGPDRAAVRPAGRSGGGGARTGGTAK
AKPSPRLRWPQASNSSTAATAATSFLATGSATGTPTFSSRGLHRIRGEWS
RR*
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mRNA from alignment at Ecto-sp13_S_contig76268:195..528-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76268.18841.1 ID=mRNA_Ecto-sp13_S_contig76268.18841.1|Name=mRNA_Ecto-sp13_S_contig76268.18841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=334bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76268:195..528- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCCGCAACAGCAGGCACCACCGGAGGCGGCGGCCAAGCTAGCGGTAGT
GACCACTCGGTCTCCTTCAACGCGGGGGCCGGACCGGGCAGCAGTACGAC
CGGCGGGTCGGAGTGGTGGCGGCGGGGCGCGGACGGGCGGTACAGCGAAA
GCGAAACCATCGCCTCGGCTGCGGTGGCCGCAAGCGAGCAACAGCAGCAG
CAGCAACAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAACATCGTTC
CTTGCAACGGGCAGCGCCACGGGGACCCCGACATTCAGTTCACGCGGCCT
CCACCGGATCCGAGGAGAATGGTCTCGACGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76268:195..528-

>mRNA_Ecto-sp13_S_contig76268.18841.1 ID=mRNA_Ecto-sp13_S_contig76268.18841.1|Name=mRNA_Ecto-sp13_S_contig76268.18841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76268:195..528- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCCGCAACAGCAGGCACCACCGGAGGCGGCGGCCAAGCTAGCGGTAGT
GACCACTCGGTCTCCTTCAACGCGGGGGCCGGACCGGGCAGCAGTACGAC
CGGCGGGTCGGAGTGGTGGCGGCGGGGCGCGGACGGGCGGTACAGCGAAA
GCGAAACCATCGCCTCGGCTGCGGTGGCCGCAAGCGAGCAACAGCAGCAC
AGCAGCAACAGCAGCAACATCGTTCCTTGCAACGGGCAGCGCCACGGGGA
CCCCGACATTCAGTTCACGCGGCCTCCACCGGATCCGAGGAGAATGGTCT
CGACGGTGA
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