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Homology
BLAST of mRNA_Ecto-sp13_S_contig7621.18833.1 vs. uniprot
Match: A0A6H5KXS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS4_9PHAE) HSP 1 Score: 557 bits (1435), Expect = 5.010e-184 Identity = 433/567 (76.37%), Postives = 440/567 (77.60%), Query Frame = 1
Query: 682 DDYNGAGADYRKVARVYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---SCPPDLGTAAKEYVAQQRQSLLLHQGETMTPAAAAGIGTRPLEAIAAGQQXXXXXXXXXXXRLEPYPGDDQAVHQRHSLVRSFSAEQRRFQTILQQQRQQPQLRQMLPXXXXXXXXXXXXXXXXXXXARTAAPPLASKRPLSWSPRDTRKAPPSSASSSLSSSPSPSMAFPLGAGMAAXXXXXXXXXXXXXXXXXXXXXXHSPAGNVAXXXXXXXXXXGEGRWPRAPMDEATAAFSGSRPFGFGAAQGSGVGVNSALTPSFAFNLPRRADMSPTSGSESGTDAGRTTVATGEYNRSPAAAGGTAPGVSSGGESPTTWPDTALVSRQLPTVEGLLPPPPVTAHGMPSVASLDPHWRRRMPRARKPALFRFGGRAGGSSGGVGGSGCNGGASSQPSSCRWPTFMSRRTATAXXXXXVVSPGTDGDGESFARRGGDHAGGGELLSSASVPRASWLGGNISXXXXXXXXXXVTLHGGRNNDARLAKLSLADRGAGDALGPTLETLELEFVGRKRE 2373
DDYNG G YRKVARVYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SC PDLGTAAKEYVAQQRQSLLL QGETMTPA AAGIGTRPLEAI GQQ RLEPYPGD QAVHQRH+LVRSFSAE+RRFQTILQ +Q XXXXXXXXXXXXXXXXXXX RPLSWSPRDTR AP SMAFPLGA MAAXXXXXXXXXXXXXXXXXXXXXX XXXXXXX GEGRWPRAPMDEA+A FSGSR FGFGAAQGSGVGVNSA+TPSF+FNLPRRADMSPTSGSESGTD GRTTVA EYNRSPAAA TAPGVSSGGESPTTW DTALVSRQLPTVEG LPPPPVTAHGMPSVASLDPHWRR MPRARKPALFRFGG SCRWPTFMSR XXXXX GTDG GESF+RRGGDHAG ELLSSASVPRASWLG XXXXXXXXXX TLHGGRNNDARLAKLSLADRGAGDALGPTLETLELEFVGRKRE
Sbjct: 292 DDYNGDGDGYRKVARVYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPLDRRRRSCSPDLGTAAKEYVAQQRQSLLLQQGETMTPAGAAGIGTRPLEAIVTGQQQLLQQPQQRRRRLEPYPGDHQAVHQRHTLVRSFSAEERRFQTILQHPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXRPLSWSPRDTRTAPXXXXXXXXXXXXXXSMAFPLGASMAAXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXRREGEGRWPRAPMDEASATFSGSRSFGFGAAQGSGVGVNSAITPSFSFNLPRRADMSPTSGSESGTDGGRTTVAAEEYNRSPAAAARTAPGVSSGGESPTTWADTALVSRQLPTVEGRLPPPPVTAHGMPSVASLDPHWRRGMPRARKPALFRFGGXX---------XXXXXXXXXXXXSCRWPTFMSRXXXXXXXXXXXXXXGTDGYGESFSRRGGDHAGXXELLSSASVPRASWLGXXXXXXXXXXXXXXXTLHGGRNNDARLAKLSLADRGAGDALGPTLETLELEFVGRKRE 846
BLAST of mRNA_Ecto-sp13_S_contig7621.18833.1 vs. uniprot
Match: D8LLT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT2_ECTSI) HSP 1 Score: 455 bits (1170), Expect = 2.040e-151 Identity = 254/311 (81.67%), Postives = 257/311 (82.64%), Query Frame = 1
Query: 1444 SPAGNVAXXXXXXXXXXGEGRWPRAPMDEATAAFSGSRPFGFGAAQGSGVGVNSALTPSFAFNLPRRADMSPTSGSESGTDAGRTTVATGEYNRSPAAAG-GTAPGVSSGGESPTTWPDTALVSRQLPTVEGLLPPPPVTAHGMPSVASLDPHWRRRMPRARKPALFRFGGRAGGSSGGVGGSGCNGGASSQPSSCRWPTFMSRRTATAXXXXXVVSPGTDGDGESFARRGGDHAGGGELLSSASVPRASWLGGNISXXXXXXXXXXVTLHGGRNNDARLAKLSLADRGAGDALGPTLETLELEFVGRKRE 2373
SPAGNVA GEGRWPRAPMDEATAAFSGSR FGFGAAQ SGVGVNSALTPSF FNLPRRAD SPTSGSESGTD GRTT A EYNRSPAAA G A G SSGGESPTTW DTALVSRQLPTVEGLLPPPPVTAHG+PSVASLDPHWRRRMP+ARKPALFRFGGRAG SQPSSCRWPTFMSRRTAT XXXXXVVSPGTDGDGE FARRGGD AGGGELLSSASVPRASWLGG+IS VTLHGGRNNDARLAKLSL DRGAGDALGPTLETLELEFVGRKRE
Sbjct: 34 SPAGNVASEEGRGGRGGGEGRWPRAPMDEATAAFSGSRSFGFGAAQSSGVGVNSALTPSFLFNLPRRADTSPTSGSESGTDGGRTTAAAEEYNRSPAAAAAGMAHGASSGGESPTTWADTALVSRQLPTVEGLLPPPPVTAHGVPSVASLDPHWRRRMPKARKPALFRFGGRAGXXXXXXXXXXXXXXXXSQPSSCRWPTFMSRRTATXXXXXXVVSPGTDGDGEPFARRGGDRAGGGELLSSASVPRASWLGGSISSSSLCSSSAVVTLHGGRNNDARLAKLSLTDRGAGDALGPTLETLELEFVGRKRE 344
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 0 |
| Model size | 2376 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Ec32 ortholog description | EsV-1-7 domain protein |
| Ec32 ortholog | Ec-02_002750.1 |
| Cds size | 2376 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464032.0708969-CDS-Ecto-sp13_S_contig7621:3815..5991 | 1681464032.0708969-CDS-Ecto-sp13_S_contig7621:3815..5991 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7621 3816..5991 - |
| 1681464032.0827668-CDS-Ecto-sp13_S_contig7621:6305..6413 | 1681464032.0827668-CDS-Ecto-sp13_S_contig7621:6305..6413 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7621 6306..6413 - |
| 1681464032.0934741-CDS-Ecto-sp13_S_contig7621:6811..6903 | 1681464032.0934741-CDS-Ecto-sp13_S_contig7621:6811..6903 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7621 6812..6903 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7621.18833.1 >prot_Ecto-sp13_S_contig7621.18833.1 ID=prot_Ecto-sp13_S_contig7621.18833.1|Name=mRNA_Ecto-sp13_S_contig7621.18833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=792bp
QEPYFGHIGGKAKFCARHKPHEAMVDVRHRRREFPSCTKQPNYGYEGQRA CYCSTHKLPTMVDVKHRRCAEDGCRGFSNFAFPGTKEKFCDAHRREGMVP SGRGRAVTTAAAVTTAAAAAPAPLAPVPAPSSTLATGGGLSSVKAEAAAA VGGASSSGVAPMMVVASGGVFVATAATAAAAAAAAHGSEDGGRRRACWSE ERGGGGVADSSSSSSSSSGSPASVMVVDDYNGAGADYRKVARVYEQQQQQ QHKQEEGSAAAMAHSSAGGPVASLLDRRRRSCPPDLGTAAKEYVAQQRQS LLLHQGETMTPAAAAGIGTRPLEAIAAGQQQLLQQPQQQRRRLEPYPGDD QAVHQRHSLVRSFSAEQRRFQTILQQQRQQPQLRQMLPLPIPFSFGGGGG VDAASASARTAAPPLASKRPLSWSPRDTRKAPPSSASSSLSSSPSPSMAF PLGAGMAAAAGGRDGGGDGSSARSSAASREHSPAGNVASEEGGGGRGGGE GRWPRAPMDEATAAFSGSRPFGFGAAQGSGVGVNSALTPSFAFNLPRRAD MSPTSGSESGTDAGRTTVATGEYNRSPAAAGGTAPGVSSGGESPTTWPDT ALVSRQLPTVEGLLPPPPVTAHGMPSVASLDPHWRRRMPRARKPALFRFG GRAGGSSGGVGGSGCNGGASSQPSSCRWPTFMSRRTATAAAAAAVVSPGT DGDGESFARRGGDHAGGGELLSSASVPRASWLGGNISSSSSCSSSAVVTL HGGRNNDARLAKLSLADRGAGDALGPTLETLELEFVGRKRE* back to topmRNA from alignment at Ecto-sp13_S_contig7621:3816..6903- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig7621.18833.1 ID=mRNA_Ecto-sp13_S_contig7621.18833.1|Name=mRNA_Ecto-sp13_S_contig7621.18833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3088bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7621:3816..6903- (Ectocarpus species13 EcNAP12_S_4_19m) CAGGAGCCCTACTTCGGCCATATCGGGGGCAAGGCGAAATTCTGCGCCAG
GCATAAGCCACACGAGGCGATGGTCGACGTTCGACACCGCCGGTGAGCGC
TGGTGGTTCGCTGCTGGTGGTGCTTGCCCTTGGTTGTATTGCTGTTGGCC
CGCTGTGTCTCTTCCTCTCTGCCGAAGCGTGTTATCACGTACTAATTCTG
AAGGTAAAGAAGAACGATGTCGGCCTCCTCTAGTATGGTAATCAGGAGGT
ACAGGTGCGCATGAGCGTACTATTATTTAGACTACTCCTGGGCGTCCAGA
AAACGACGTTCGTCAGACAGGCCCGCGCTTGACATCCCTTCCCCTCGCCG
TTCTTGCCACCCTCTCTTGACCTTGACCCTTTCGTGCCGATGTTCGTGTT
TTTTTGTCTTGTCCTCTTGGATTCCGTTCGCGTCTCTCCGATGGTGGTGG
CCTGGCCGGTAAACCACAAAAAAAAAAAAAAATTGAGCAGCCGCGAGTTT
CCCTCATGCACCAAGCAGCCCAACTACGGCTACGAGGGGCAGCGCGCCTG
CTACTGCTCGACGCACAAGCTGCCTACCATGGTGGATGTGAAGCACAGGT
AAACGGTCAAGAGTTGGTCTCACTGTTCACGCCGAAGTGAAGATCACGTC
ATGAACCGTCACCGCAGTTGAGGTTGCTGGTTGCACTCTGTTCCTCCTTT
GTTGGGGGGGGTCTCGCCGCTCGCCGATCATGCGGCTCGCCCGATACTTG
GCCGCTGCCGTTCCCCTCTATTATCTCTTCGAACGCCCGACGCGCTCTGT
CCGCAACATGGGATGCAAGGCAAGAGGTCCTAGGCGATGACAGCAGTAAC
ACGTGGCAATAACAGCACAAATTTCCCTCCGTCCAATAACGGCACTGAAA
CCGTTACGGCAGGCGGTGCGCGGAGGACGGGTGCCGCGGCTTCTCCAACT
TCGCATTCCCGGGCACGAAGGAGAAGTTCTGCGACGCCCACCGCCGGGAA
GGGATGGTCCCCTCGGGCAGGGGGCGAGCCGTCACCACCGCCGCCGCCGT
CACCACCGCCGCCGCCGCCGCGCCTGCTCCTCTCGCCCCTGTCCCTGCTC
CATCAAGCACGCTTGCTACCGGCGGCGGCTTGTCGTCGGTGAAAGCGGAG
GCGGCGGCGGCGGTCGGCGGTGCTTCCTCGTCCGGGGTAGCGCCGATGAT
GGTCGTCGCGAGCGGGGGAGTTTTTGTCGCTACTGCTGCTACTGCTGCTG
CTGCTGCTGCTGCTGCTCACGGATCGGAGGATGGCGGCAGGAGGAGAGCG
TGCTGGTCAGAGGAGCGCGGTGGCGGCGGCGTTGCCGACAGCAGCAGCAG
CAGCAGCAGCAGCAGCGGGAGCCCAGCGAGCGTGATGGTTGTCGACGACT
ACAACGGCGCCGGCGCCGACTACCGCAAGGTTGCTCGGGTCTACGAGCAG
CAGCAGCAGCAGCAGCACAAGCAGGAAGAGGGGAGCGCCGCCGCCATGGC
CCACTCCTCCGCCGGCGGACCAGTAGCATCTCTTCTGGACCGGCGCCGAC
GGAGCTGCCCGCCGGACTTGGGCACCGCGGCGAAGGAATACGTCGCCCAG
CAGCGGCAGTCGCTTCTTCTCCATCAAGGAGAGACCATGACGCCGGCGGC
GGCCGCCGGGATCGGCACACGGCCGCTCGAAGCGATCGCCGCGGGCCAGC
AGCAGCTGCTGCAGCAGCCGCAGCAGCAGCGGCGGCGTCTGGAGCCGTAC
CCGGGCGACGACCAGGCCGTCCACCAGCGCCACAGCCTCGTCCGTTCCTT
CTCGGCCGAGCAGCGGCGGTTCCAGACCATCCTGCAGCAGCAGCGGCAGC
AGCCCCAGCTGCGGCAGATGCTTCCTCTGCCCATCCCTTTCTCGTTCGGC
GGCGGCGGCGGGGTCGACGCGGCGTCGGCGTCGGCGAGAACAGCGGCACC
GCCATTGGCGTCGAAGCGCCCCCTGTCATGGAGCCCACGGGACACGCGGA
AGGCACCGCCGTCATCGGCGTCGTCGTCGCTTTCGTCGTCGCCGTCGCCG
TCGATGGCTTTCCCCCTCGGCGCTGGCATGGCTGCTGCAGCGGGAGGGAG
AGACGGCGGCGGTGATGGCAGCAGCGCCCGTTCTTCGGCGGCGAGCCGCG
AACATAGCCCCGCAGGAAACGTAGCCAGCGAGGAGGGAGGCGGAGGAAGA
GGGGGGGGGGAAGGGAGATGGCCGAGGGCTCCCATGGATGAGGCCACGGC
CGCTTTCTCCGGTTCTCGTCCTTTCGGATTTGGCGCGGCGCAGGGCTCAG
GGGTCGGCGTCAACAGCGCGCTTACCCCGTCGTTTGCATTCAACCTACCC
CGGCGCGCCGACATGTCCCCAACTAGCGGCAGCGAGAGCGGCACCGACGC
CGGGAGGACGACCGTGGCGACCGGGGAATACAACAGATCACCGGCGGCAG
CGGGGGGGACGGCGCCCGGCGTGAGCAGCGGCGGTGAATCCCCGACCACC
TGGCCCGACACGGCGCTGGTCAGTAGGCAGCTGCCCACGGTCGAAGGCCT
CCTGCCTCCCCCTCCCGTCACCGCCCACGGTATGCCGTCAGTGGCCTCGC
TCGACCCCCACTGGCGGCGCCGCATGCCGAGGGCCCGGAAGCCGGCCCTG
TTCAGGTTCGGCGGCCGCGCCGGCGGCAGCAGCGGCGGCGTCGGTGGTAG
TGGCTGCAACGGCGGCGCCTCTTCCCAGCCGTCGTCGTGCCGGTGGCCGA
CGTTCATGTCGAGGCGGACGGCGACCGCGGCCGCCGCGGCGGCGGTGGTA
TCCCCAGGCACGGACGGGGACGGGGAATCCTTCGCACGCCGCGGTGGCGA
CCACGCCGGCGGTGGCGAGCTGTTGTCTTCAGCGTCGGTGCCGAGGGCGT
CATGGTTGGGCGGGAACATTTCCTCGTCGTCGTCGTGCTCGTCGTCGGCC
GTCGTGACCCTCCACGGCGGGAGGAATAACGACGCGAGACTCGCGAAGCT
GTCGTTGGCCGACCGCGGAGCCGGAGACGCCCTGGGTCCCACTCTCGAGA
CGCTTGAGTTGGAGTTTGTGGGCAGGAAAAGGGAGTGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig7621:3816..6903- >mRNA_Ecto-sp13_S_contig7621.18833.1 ID=mRNA_Ecto-sp13_S_contig7621.18833.1|Name=mRNA_Ecto-sp13_S_contig7621.18833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2376bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7621:3816..6903- (Ectocarpus species13 EcNAP12_S_4_19m) CAGGAGCCCTACTTCGGCCATATCGGGGGCAAGGCGAAATTCTGCGCCAG GCATAAGCCACACGAGGCGATGGTCGACGTTCGACACCGCCGCCGCGAGT TTCCCTCATGCACCAAGCAGCCCAACTACGGCTACGAGGGGCAGCGCGCC TGCTACTGCTCGACGCACAAGCTGCCTACCATGGTGGATGTGAAGCACAG GCGGTGCGCGGAGGACGGGTGCCGCGGCTTCTCCAACTTCGCATTCCCGG GCACGAAGGAGAAGTTCTGCGACGCCCACCGCCGGGAAGGGATGGTCCCC TCGGGCAGGGGGCGAGCCGTCACCACCGCCGCCGCCGTCACCACCGCCGC CGCCGCCGCGCCTGCTCCTCTCGCCCCTGTCCCTGCTCCATCAAGCACGC TTGCTACCGGCGGCGGCTTGTCGTCGGTGAAAGCGGAGGCGGCGGCGGCG GTCGGCGGTGCTTCCTCGTCCGGGGTAGCGCCGATGATGGTCGTCGCGAG CGGGGGAGTTTTTGTCGCTACTGCTGCTACTGCTGCTGCTGCTGCTGCTG CTGCTCACGGATCGGAGGATGGCGGCAGGAGGAGAGCGTGCTGGTCAGAG GAGCGCGGTGGCGGCGGCGTTGCCGACAGCAGCAGCAGCAGCAGCAGCAG CAGCGGGAGCCCAGCGAGCGTGATGGTTGTCGACGACTACAACGGCGCCG GCGCCGACTACCGCAAGGTTGCTCGGGTCTACGAGCAGCAGCAGCAGCAG CAGCACAAGCAGGAAGAGGGGAGCGCCGCCGCCATGGCCCACTCCTCCGC CGGCGGACCAGTAGCATCTCTTCTGGACCGGCGCCGACGGAGCTGCCCGC CGGACTTGGGCACCGCGGCGAAGGAATACGTCGCCCAGCAGCGGCAGTCG CTTCTTCTCCATCAAGGAGAGACCATGACGCCGGCGGCGGCCGCCGGGAT CGGCACACGGCCGCTCGAAGCGATCGCCGCGGGCCAGCAGCAGCTGCTGC AGCAGCCGCAGCAGCAGCGGCGGCGTCTGGAGCCGTACCCGGGCGACGAC CAGGCCGTCCACCAGCGCCACAGCCTCGTCCGTTCCTTCTCGGCCGAGCA GCGGCGGTTCCAGACCATCCTGCAGCAGCAGCGGCAGCAGCCCCAGCTGC GGCAGATGCTTCCTCTGCCCATCCCTTTCTCGTTCGGCGGCGGCGGCGGG GTCGACGCGGCGTCGGCGTCGGCGAGAACAGCGGCACCGCCATTGGCGTC GAAGCGCCCCCTGTCATGGAGCCCACGGGACACGCGGAAGGCACCGCCGT CATCGGCGTCGTCGTCGCTTTCGTCGTCGCCGTCGCCGTCGATGGCTTTC CCCCTCGGCGCTGGCATGGCTGCTGCAGCGGGAGGGAGAGACGGCGGCGG TGATGGCAGCAGCGCCCGTTCTTCGGCGGCGAGCCGCGAACATAGCCCCG CAGGAAACGTAGCCAGCGAGGAGGGAGGCGGAGGAAGAGGGGGGGGGGAA GGGAGATGGCCGAGGGCTCCCATGGATGAGGCCACGGCCGCTTTCTCCGG TTCTCGTCCTTTCGGATTTGGCGCGGCGCAGGGCTCAGGGGTCGGCGTCA ACAGCGCGCTTACCCCGTCGTTTGCATTCAACCTACCCCGGCGCGCCGAC ATGTCCCCAACTAGCGGCAGCGAGAGCGGCACCGACGCCGGGAGGACGAC CGTGGCGACCGGGGAATACAACAGATCACCGGCGGCAGCGGGGGGGACGG CGCCCGGCGTGAGCAGCGGCGGTGAATCCCCGACCACCTGGCCCGACACG GCGCTGGTCAGTAGGCAGCTGCCCACGGTCGAAGGCCTCCTGCCTCCCCC TCCCGTCACCGCCCACGGTATGCCGTCAGTGGCCTCGCTCGACCCCCACT GGCGGCGCCGCATGCCGAGGGCCCGGAAGCCGGCCCTGTTCAGGTTCGGC GGCCGCGCCGGCGGCAGCAGCGGCGGCGTCGGTGGTAGTGGCTGCAACGG CGGCGCCTCTTCCCAGCCGTCGTCGTGCCGGTGGCCGACGTTCATGTCGA GGCGGACGGCGACCGCGGCCGCCGCGGCGGCGGTGGTATCCCCAGGCACG GACGGGGACGGGGAATCCTTCGCACGCCGCGGTGGCGACCACGCCGGCGG TGGCGAGCTGTTGTCTTCAGCGTCGGTGCCGAGGGCGTCATGGTTGGGCG GGAACATTTCCTCGTCGTCGTCGTGCTCGTCGTCGGCCGTCGTGACCCTC CACGGCGGGAGGAATAACGACGCGAGACTCGCGAAGCTGTCGTTGGCCGA CCGCGGAGCCGGAGACGCCCTGGGTCCCACTCTCGAGACGCTTGAGTTGG AGTTTGTGGGCAGGAAAAGGGAGTGA back to top
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