mRNA_Ecto-sp13_S_contig7617.18825.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig7617.18825.1
Unique Name	mRNA_Ecto-sp13_S_contig7617.18825.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7617.18825.1 vs. uniprot
Match: A0A6H5L1W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W0_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 8.830e-92
Identity = 144/152 (94.74%), Postives = 148/152 (97.37%), Query Frame = 1

Query:    1 VAGRSEIPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRVTFRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDEDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 456
            V  +SEIPLTFRLVPSVWLS EAGVLSCSDYDTGAPLPTSS+GRTIGAYAHLRVRVTFRPREVG+RDYRIFVENLNNVADTLAVDILTSVVSE HREGLRIETD+DGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV
Sbjct:  228 VWNKSEIPLTFRLVPSVWLSDEAGVLSCSDYDTGAPLPTSSSGRTIGAYAHLRVRVTFRPREVGQRDYRIFVENLNNVADTLAVDILTSVVSEGHREGLRIETDKDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 379

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7617.18825.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 6.790e-87
Identity = 141/146 (96.58%), Postives = 144/146 (98.63%), Query Frame = 1

Query:   19 IPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRVTFRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDEDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 456
            IPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRV FRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETD+DGLLEGGSVL FDKC+TGMPVWRKLRVKNTTVH+MDVSLGSDRPGEV
Sbjct:  212 IPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRVAFRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDKDGLLEGGSVLHFDKCYTGMPVWRKLRVKNTTVHAMDVSLGSDRPGEV 357

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7617.18825.1 vs. uniprot
Match: A0A6G0WUD1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUD1_9STRA)

HSP 1 Score: 127 bits (318), Expect = 6.480e-31
Identity = 71/152 (46.71%), Postives = 95/152 (62.50%), Query Frame = 1

Query:    1 VAGRSEIPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRVTFRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDEDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 456
            V  RSEIPL FRLVPSV  + E  +L+CSDY+TG  L  S    ++ AY+H+RVRVT+RP EVGE+ + I  +NL++  +   V I      E HREGL I       L GGS+L F  C+TG+P  + L +KNTT  ++ + L SDRP E+
Sbjct:  315 VWNRSEIPLVFRLVPSV-AAHEKQMLTCSDYNTGYVLGESPF--SVAAYSHMRVRVTYRPVEVGEQFFEILAQNLHDARNVKRVKIHAIASKEHHREGLSIREPNGSYLMGGSLLDFGDCYTGIPTSKALVLKNTTEAALHIELLSDRPKEI 463

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7617.18825.1 vs. uniprot
Match: A0A024U7H7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7H7_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.730e-30
Identity = 68/152 (44.74%), Postives = 90/152 (59.21%), Query Frame = 1

Query:    1 VAGRSEIPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRVTFRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDEDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 456
            V  RSEIPL FRLV S   + E  +L+CSDY+TG  L  S    T+ AY+H+R+RVTFRP EVGE+ + I  +N++N  +   + I      E HREGL I       L GG +L F  C+TG P  + L +KN T  ++ + L SDRP EV
Sbjct:  321 VWNRSEIPLIFRLVTSSVTATEKQLLTCSDYNTGYALGESPF--TVAAYSHMRIRVTFRPMEVGEQFFEILAQNMHNSRNVKTLKIHAIASKEHHREGLSIRDPNGSYLMGGGLLDFGDCYTGFPTSKVLVLKNMTEVALHIELLSDRPKEV 470

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7617.18825.1 vs. uniprot
Match: W4GXV3_9STRA (Uncharacterized protein n=12 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXV3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.960e-29
Identity = 68/152 (44.74%), Postives = 90/152 (59.21%), Query Frame = 1

Query:    1 VAGRSEIPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRVTFRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDEDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 456
            V  RSEIPL FRLV S   + E  +L+CSDY+TG  L  S    T+ AY+H+RVRVT+RP EVGE+ + I  +NL++  +   + I      E HREGL I       L GG +L F  C+TG P  + L +KN T  ++ + L SDRP EV
Sbjct:  321 VWNRSEIPLIFRLVTSSVSTPEKQLLTCSDYNTGYALGESPY--TVAAYSHMRVRVTYRPMEVGEQFFEILAQNLHDSRNVKTLKIHAIASKEHHREGLSIRDPNGSYLMGGGLLDFGDCYTGFPTSKVLVLKNMTEAALHIELLSDRPKEV 470

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7617.18825.1 vs. uniprot
Match: A0A397BD28_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BD28_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.380e-29
Identity = 68/152 (44.74%), Postives = 90/152 (59.21%), Query Frame = 1

Query:    1 VAGRSEIPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRVTFRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDEDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 456
            V  RSEIPL FRLV S   + E  +L+CSDY+TG  L  S    T+ AY+H+RVRVT+RP EVGE+ + I  +NL++  +   + I      E HREGL I       L GG +L F  C+TG P  + L +KN T  ++ + L SDRP EV
Sbjct:  321 VWNRSEIPLIFRLVTSSVSTPEKQLLTCSDYNTGYALGESPY--TVAAYSHMRVRVTYRPLEVGEQFFEILAQNLHDSRNVKTLKIHAIASKEHHREGLSIRDPNGSYLMGGGLLDFGDCYTGFPTSKVLVLKNMTEAALHIELLSDRPKEV 470

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7617.18825.1 vs. uniprot
Match: A0A485LAB2_9STRA (Aste57867_18395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAB2_9STRA)

HSP 1 Score: 120 bits (302), Expect = 9.220e-29
Identity = 69/152 (45.39%), Postives = 91/152 (59.87%), Query Frame = 1

Query:    1 VAGRSEIPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRVTFRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDEDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 456
            V  RSEIPL FRLV SV  + E  +L+C DY+TG  L       +I AY H+R+RVT+RP EVGE+ + + V+NL++  +   + I      E HREGL I       L GGSVL F  C+TG+P  + L VKN T  ++ + L SDRP EV
Sbjct:  319 VWNRSEIPLIFRLVTSV-TAHEKQLLTCVDYNTGYAL--GETPYSIAAYGHMRIRVTYRPLEVGEQFFEVLVQNLHDSRNVKTLKIHAIASKEHHREGLSIRDSNGSYLMGGSVLDFGDCYTGIPTSKVLVVKNMTEVALQIELLSDRPKEV 467

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7617.18825.1 vs. uniprot
Match: A0A067C9G9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C9G9_SAPPC)

HSP 1 Score: 112 bits (281), Expect = 6.150e-26
Identity = 61/152 (40.13%), Postives = 89/152 (58.55%), Query Frame = 1

Query:    1 VAGRSEIPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRVTFRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDEDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 456
            V  RSEIPL FR++ S+    +A +L+CSDY++G  +  +     + AY H+RVRVT+RP EVGE  + I V+NL++  +   + +      E HREGL I       L  GS++ F  C+TGMP  + + +KN T   + + L SDRP EV
Sbjct:  279 VWNRSEIPLVFRMMSSIPDDQKA-MLTCSDYNSGYAMGENPF--QVAAYGHMRVRVTYRPVEVGEHSFEILVQNLHDSRNVKTLKVHAIASKEHHREGLSIREPNGSFLMSGSLMDFGDCYTGMPTPKIVLIKNMTEAPLHIELSSDRPKEV 427

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7617.18825.1 vs. uniprot
Match: A0A1V9YDG1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDG1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.380e-26
Identity = 64/152 (42.11%), Postives = 89/152 (58.55%), Query Frame = 1

Query:    1 VAGRSEIPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRVTFRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDEDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 456
            V  RSEIPL FR+V S+    +  +L+CSDY++G  L  S     + AY H+RVRVT+RP EVGE+ + I V+NL++  +  ++ +      E HREGL I       L  GSVL F  C+TGMP  + + +KN T   + + L SDR  EV
Sbjct:  282 VWNRSEIPLVFRMVSSM-PEDQKMLLTCSDYNSGYALGESPF--QVAAYGHMRVRVTYRPIEVGEQSFEILVQNLHDSRNIKSLKVHAVASKEHHREGLSIREPSGPFLMSGSVLDFGDCYTGMPTPKIVLIKNMTEAPLHIELSSDRAKEV 430

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7617.18825.1 vs. uniprot
Match: K3WPU0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPU0_GLOUD)

HSP 1 Score: 107 bits (268), Expect = 3.450e-24
Identity = 61/153 (39.87%), Postives = 89/153 (58.17%), Query Frame = 1

Query:    1 VAGRSEIPLTFRLVPSVWLSAEA-GVLSCSDYDTGAPLPTSSAGRTIGAYAHLRVRVTFRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDEDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 456
            V  RSEIPL F+LV S+    E   +++C+DY+TG  +   +      AY H+R+RVT+RP+EVGER + I  +NL++  +   + I      E HREGL I+      L  GS L F  C+TG+   + L ++NTT  ++ V L SDRP E+
Sbjct:  378 VWNRSEIPLLFKLVSSLSAFDETKDLITCTDYNTGYVIENKTL--QAAAYGHVRIRVTYRPQEVGERFFEIHAQNLHDSRNVKILRIHAITNKEHHREGLSIKEPNGSYLMSGSKLDFGDCYTGLANSKVLLIRNTTEATLHVDLTSDRPKEI 528

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig7617.18825.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig7617.18825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L1W0_9PHAE	8.830e-92	94.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LHH6_ECTSI	6.790e-87	96.58	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6G0WUD1_9STRA	6.480e-31	46.71	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A024U7H7_9STRA	7.730e-30	44.74	Uncharacterized protein n=3 Tax=Aphanomyces invada...	[more]
W4GXV3_9STRA	4.960e-29	44.74	Uncharacterized protein n=12 Tax=Aphanomyces astac...	[more]
A0A397BD28_9STRA	6.380e-29	44.74	Uncharacterized protein (Fragment) n=1 Tax=Aphanom...	[more]
A0A485LAB2_9STRA	9.220e-29	45.39	Aste57867_18395 protein n=1 Tax=Aphanomyces stella...	[more]
A0A067C9G9_SAPPC	6.150e-26	40.13	Uncharacterized protein n=2 Tax=Saprolegnia TaxID=...	[more]
A0A1V9YDG1_9STRA	8.380e-26	42.11	Uncharacterized protein n=1 Tax=Achlya hypogyna Ta...	[more]
K3WPU0_GLOUD	3.450e-24	39.87	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig7617	contig	Ecto-sp13_S_contig7617:3007..4132 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	288.1
Seed ortholog evalue	2.4e-75
Seed eggNOG ortholog	2880.D8LHH6
Model size	468
Hectar predicted targeting category	other localisation
Exons	2
EggNOG OGs	28MMI@1,2QU5A@2759
Cds size	468
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464031.2813084-CDS-Ecto-sp13_S_contig7617:3006..3192	1681464031.2813084-CDS-Ecto-sp13_S_contig7617:3006..3192	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7617 3007..3192 +
1681464031.2925048-CDS-Ecto-sp13_S_contig7617:3850..4132	1681464031.2925048-CDS-Ecto-sp13_S_contig7617:3850..4132	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7617 3851..4132 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig7617.18825.1	prot_Ecto-sp13_S_contig7617.18825.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig7617 3007..4132 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig7617:3007..4132+
coding sequence from alignment at Ecto-sp13_S_contig7617:3007..4132+

protein sequence of mRNA_Ecto-sp13_S_contig7617.18825.1

>prot_Ecto-sp13_S_contig7617.18825.1 ID=prot_Ecto-sp13_S_contig7617.18825.1|Name=mRNA_Ecto-sp13_S_contig7617.18825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
VAGRSEIPLTFRLVPSVWLSAEAGVLSCSDYDTGAPLPTSSAGRTIGAYA
HLRVRVTFRPREVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLR
IETDEDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPG
EVCSSL

mRNA from alignment at Ecto-sp13_S_contig7617:3007..4132+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig7617.18825.1 ID=mRNA_Ecto-sp13_S_contig7617.18825.1|Name=mRNA_Ecto-sp13_S_contig7617.18825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7617:3007..4132+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCCGGAAGATCCGAGATCCCGCTGACGTTTCGGCTGGTGCCTTCGGT
GTGGCTGTCGGCCGAAGCGGGAGTGCTCTCCTGCTCAGACTACGACACAG
GGGCTCCCTTGCCGACCAGCAGCGCCGGCCGGACCATCGGGGCCTACGCG
CACCTTCGAGTGCGCGTGACTTTCCGACCACGAGAGGTGAGAGCTGGTGC
GCATTGCAGGTGTTGGCGGTGGTGTAGGTGTTGCTGTTGTTGGTGCTGTT
GTCGCACATGATGCTGTGATTATTTTTGTCTTTGTTGTTGTTGTTGTTGT
TGTTGCTACTGTTGTTGTTGTTGCGGTGTTGGTTGCCTTTGTCCTCGACT
GCTTCCTGCGACGGCTGATGCGGCAGCACGCCACGAGGGCGTTTTCGCAC
TCGCAGAAAAAAGTTCGGACTTAACCTCGACGCCGCCGTCGTCAACAAAC
CCTCGGTTTTCTCAGATGGAAATTCAGGGCTCGTAAAACCCGTCAACGTG
CACCAACCTTGCAACCTCCCAGACCGTCTCGTGCGTACGCCTGGTGTTTG
CTTTGCGTGACCGATGTCAATTATTCTGTTCATGTGTGGTGCACGGAGCA
AACCACCAAGCTAATCTCGACCTGATCCGTCCAGAGCTACTCAGAACTTC
CTGTTCCCCCGCAATGTACCAACTTCGCATTCACACGCCGCTGAATACTG
GCTACACGGAGACCCCTCTCGCCCACGGCCCGCGGACGTCGCCTGAAGTC
AGTAACCTCACACACACAGCACTTCTGCCCTGATTATGGGAGGTCCCATC
AACACTCACGAAACCTAAACCCTCACGTGACGGCACGGTTGCAGGTAGGG
GAGCGGGACTATCGAATCTTCGTGGAGAACCTGAACAATGTTGCAGACAC
GCTCGCCGTGGACATCCTGACGTCGGTCGTGTCCGAGGACCACCGGGAGG
GTCTTCGGATAGAGACGGACGAGGACGGCCTACTCGAAGGCGGAAGTGTC
CTCCAGTTCGACAAGTGCTTCACGGGCATGCCCGTGTGGCGGAAGCTGCG
GGTGAAGAACACCACGGTCCACTCCATGGACGTCAGCCTCGGCTCCGACA
GACCCGGCGAGGTGTGTAGTAGCCTC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7617:3007..4132+

>mRNA_Ecto-sp13_S_contig7617.18825.1 ID=mRNA_Ecto-sp13_S_contig7617.18825.1|Name=mRNA_Ecto-sp13_S_contig7617.18825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7617:3007..4132+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCCGGAAGATCCGAGATCCCGCTGACGTTTCGGCTGGTGCCTTCGGT
GTGGCTGTCGGCCGAAGCGGGAGTGCTCTCCTGCTCAGACTACGACACAG
GGGCTCCCTTGCCGACCAGCAGCGCCGGCCGGACCATCGGGGCCTACGCG
CACCTTCGAGTGCGCGTGACTTTCCGACCACGAGAGGTAGGGGAGCGGGA
CTATCGAATCTTCGTGGAGAACCTGAACAATGTTGCAGACACGCTCGCCG
TGGACATCCTGACGTCGGTCGTGTCCGAGGACCACCGGGAGGGTCTTCGG
ATAGAGACGGACGAGGACGGCCTACTCGAAGGCGGAAGTGTCCTCCAGTT
CGACAAGTGCTTCACGGGCATGCCCGTGTGGCGGAAGCTGCGGGTGAAGA
ACACCACGGTCCACTCCATGGACGTCAGCCTCGGCTCCGACAGACCCGGC
GAGGTGTGTAGTAGCCTC