mRNA_Ecto-sp13_S_contig76109.18818.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76109.18818.1
Unique NamemRNA_Ecto-sp13_S_contig76109.18818.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76109.18818.1 vs. uniprot
Match: A0A6H5JTU5_9PHAE (Dzip-like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU5_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 5.560e-41
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:   43 RFEPTTGSVDWHRVATAKVSKIEREGDLQTLRQFLPDVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQV 267
            +FEPTTGSVDWHRVATA VSKIEREGDLQTLRQFLPDVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQV
Sbjct:  335 KFEPTTGSVDWHRVATANVSKIEREGDLQTLRQFLPDVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQV 409
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BLAST of mRNA_Ecto-sp13_S_contig76109.18818.1 vs. uniprot
Match: D7G5R4_ECTSI (Similar to DAZ interacting protein 1-like isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R4_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.920e-40
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:   43 RFEPTTGSVDWHRVATAKVSKIEREGDLQTLRQFLPDVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQV 267
            +FEPTTGSVDWHRVAT  VSKIEREGDLQTLRQFLPDVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQV
Sbjct:  299 KFEPTTGSVDWHRVATVNVSKIEREGDLQTLRQFLPDVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQV 373
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BLAST of mRNA_Ecto-sp13_S_contig76109.18818.1 vs. uniprot
Match: A0A7S4A1N4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1N4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.620e-10
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   46 FEPTTGSVDWHRVATAKVSKIEREGDLQTLRQFLPDVAVGKVDD---DDNFDTNPGLLNAFRLAQLQAQYVLHCQQV 267
            FE  T  VDW RVA+  V ++E+ GD+  LR+FL DV VG +DD   D   + +   + A R +QL AQY+L+ Q V
Sbjct:    8 FEERTAPVDWPRVASTDVRRLEKLGDVVALREFLADVCVGDIDDGFVDYESERSQLEMKALRTSQLAAQYLLYAQHV 84
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BLAST of mRNA_Ecto-sp13_S_contig76109.18818.1 vs. uniprot
Match: A0A8J2SA56_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SA56_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.210e-9
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   46 FEPTTGSVDWHRVATAKVSKIEREGDLQTLRQFLPDVAVGKVDD---DDNFDTNPGLLNAFRLAQLQAQYVLHCQQV 267
            FE  T  VDW RVA+  V ++E+ GD+  LR+FL DV VG +DD   D   + +   + A R +QL AQY+L+ Q V
Sbjct:    8 FEERTAPVDWPRVASTDVRRLEKLGDVVALREFLADVCVGDIDDGFVDYESERSQLEMKALRTSQLAAQYLLYAQHV 84
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BLAST of mRNA_Ecto-sp13_S_contig76109.18818.1 vs. uniprot
Match: A0A7J6CZ12_9TELE (C2H2-type domain-containing protein n=16 Tax=Cyprinidae TaxID=7953 RepID=A0A7J6CZ12_9TELE)

HSP 1 Score: 52.4 bits (124), Expect = 7.650e-6
Identity = 25/81 (30.86%), Postives = 43/81 (53.09%), Query Frame = 1 
Query:   31 LPSHRFEPTTGSVDWHRVATAKVSKIEREGDLQTLRQFLPDVAVGKVDDDD----NFDTNPGLLNAFRLAQLQAQYVLHCQ 261
            L   RF   T  +DW R+++  V ++ER+ D+  L+ F+  V    V+ +         +P L+   R++QL  +Y+LHCQ
Sbjct:   47 LQPFRFRSRTEPIDWRRLSSLDVERVERDMDVDMLQNFITTVTFCAVEGERCPNCQGAADPSLIKLLRMSQLSTEYLLHCQ 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76109.18818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JTU5_9PHAE5.560e-4197.33Dzip-like_N domain-containing protein n=1 Tax=Ecto... [more]
D7G5R4_ECTSI1.920e-4096.00Similar to DAZ interacting protein 1-like isoform ... [more]
A0A7S4A1N4_9STRA5.620e-1044.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SA56_9STRA1.210e-944.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7J6CZ12_9TELE7.650e-630.86C2H2-type domain-containing protein n=16 Tax=Cypri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76109contigEcto-sp13_S_contig76109:322..588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size267
Hectar predicted targeting categoryother localisation
Exons1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464030.8826284-CDS-Ecto-sp13_S_contig76109:321..5881681464030.8826284-CDS-Ecto-sp13_S_contig76109:321..588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76109 322..588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76109.18818.1prot_Ecto-sp13_S_contig76109.18818.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76109 322..588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76109.18818.1

>prot_Ecto-sp13_S_contig76109.18818.1 ID=prot_Ecto-sp13_S_contig76109.18818.1|Name=mRNA_Ecto-sp13_S_contig76109.18818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MDTFRSRLTSLPSHRFEPTTGSVDWHRVATAKVSKIEREGDLQTLRQFLP
DVAVGKVDDDDNFDTNPGLLNAFRLAQLQAQYVLHCQQV
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mRNA from alignment at Ecto-sp13_S_contig76109:322..588-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76109.18818.1 ID=mRNA_Ecto-sp13_S_contig76109.18818.1|Name=mRNA_Ecto-sp13_S_contig76109.18818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76109:322..588- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACACCTTCCGGTCACGGTTGACTTCCCTGCCCTCTCACAGGTTCGA
GCCAACCACCGGCAGCGTGGATTGGCATCGAGTCGCAACAGCCAAAGTGT
CCAAGATTGAAAGAGAGGGAGACCTGCAGACACTCAGACAGTTTCTCCCG
GACGTAGCCGTCGGAAAGGTAGACGATGATGACAACTTCGACACCAATCC
CGGCCTCTTGAACGCGTTTCGACTGGCGCAGCTTCAAGCGCAGTACGTGC
TCCACTGCCAGCAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76109:322..588-

>mRNA_Ecto-sp13_S_contig76109.18818.1 ID=mRNA_Ecto-sp13_S_contig76109.18818.1|Name=mRNA_Ecto-sp13_S_contig76109.18818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76109:322..588- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACACCTTCCGGTCACGGTTGACTTCCCTGCCCTCTCACAGGTTCGA
GCCAACCACCGGCAGCGTGGATTGGCATCGAGTCGCAACAGCCAAAGTGT
CCAAGATTGAAAGAGAGGGAGACCTGCAGACACTCAGACAGTTTCTCCCG
GACGTAGCCGTCGGAAAGGTAGACGATGATGACAACTTCGACACCAATCC
CGGCCTCTTGAACGCGTTTCGACTGGCGCAGCTTCAAGCGCAGTACGTGC
TCCACTGCCAGCAGGTA
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