mRNA_Ecto-sp13_S_contig75983.18802.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75983.18802.1
Unique NamemRNA_Ecto-sp13_S_contig75983.18802.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75983.18802.1 vs. uniprot
Match: A0A6H5JVB1_9PHAE (GT8 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JVB1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 5.700e-31
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 VRPVAVETNPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTLVLENIDELFECEPFCA 183
            VRPVAVE NPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTLVLENIDELFECEPFCA
Sbjct:  160 VRPVAVERNPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTLVLENIDELFECEPFCA 220
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BLAST of mRNA_Ecto-sp13_S_contig75983.18802.1 vs. uniprot
Match: A0A836CGY7_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGY7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.220e-16
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    7 PVAVETNPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTL-----------VLENIDELFECEPFCA 183
            PV V  NPN  FQSRLVFVYTKLLI  M E YD++VFLD+DTL           VLEN+DELF+C PFCA
Sbjct:   88 PVEVTANPNAGFQSRLVFVYTKLLIFNMVE-YDKLVFLDSDTLQHHEIPQTAALVLENVDELFQCGPFCA 156
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BLAST of mRNA_Ecto-sp13_S_contig75983.18802.1 vs. uniprot
Match: UPI001CB97C80 (inositol phosphorylceramide glucuronosyltransferase 1-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB97C80)

HSP 1 Score: 63.9 bits (154), Expect = 2.090e-10
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 VRPVAVETNPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTLVLENIDELFECEPFCA 183
            V+P+++  NPNQ   +R   VYTKL I  M + Y+++V+LDADT+V++NID LF+C  FCA
Sbjct:  104 VKPISLLENPNQVRPTRFWGVYTKLKIFNMTD-YEKVVYLDADTIVIKNIDVLFKCGKFCA 163
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BLAST of mRNA_Ecto-sp13_S_contig75983.18802.1 vs. uniprot
Match: A0A2U1M1C8_ARTAN (Hexosyltransferase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1M1C8_ARTAN)

HSP 1 Score: 63.5 bits (153), Expect = 2.860e-10
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 VRPVAVETNPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTLVLENIDELFECEPFCA 183
            V+P+++  NPNQ   +R   VYTKL I  M + Y+++V+LDADT+V++NID LF+C  FCA
Sbjct:   87 VKPISLLENPNQVRPTRFWGVYTKLKIFNMTD-YEKVVYLDADTIVVKNIDVLFKCGKFCA 146
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BLAST of mRNA_Ecto-sp13_S_contig75983.18802.1 vs. uniprot
Match: UPI001CB9B3AE (inositol phosphorylceramide glucuronosyltransferase 1-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9B3AE)

HSP 1 Score: 63.2 bits (152), Expect = 3.910e-10
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 VRPVAVETNPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTLVLENIDELFECEPFCA 183
            V P+++  NPNQ   +R   VYTKL I  M + Y ++V+LDADT+V++NID+LF+C  FCA
Sbjct:   90 VTPISLLNNPNQVRPTRFWGVYTKLKIFNMTD-YKKVVYLDADTIVVKNIDDLFKCGKFCA 149
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BLAST of mRNA_Ecto-sp13_S_contig75983.18802.1 vs. uniprot
Match: A0A6J1CTK2_MOMCH (Hexosyltransferase n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CTK2_MOMCH)

HSP 1 Score: 63.2 bits (152), Expect = 3.910e-10
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 VRPVAVETNPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTLVLENIDELFECEPFCA 183
            V  +++  NPNQ   SR   VYTKL I  M   Y ++V+LDADT+VL+NI++LFEC  FCA
Sbjct:   87 VEKISLLANPNQIHPSRFWGVYTKLKIFNMTN-YRKVVYLDADTIVLKNIEDLFECSKFCA 146
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BLAST of mRNA_Ecto-sp13_S_contig75983.18802.1 vs. uniprot
Match: A0A2U1MMV5_ARTAN (Hexosyltransferase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MMV5_ARTAN)

HSP 1 Score: 62.8 bits (151), Expect = 4.860e-10
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 VRPVAVETNPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTLVLENIDELFECEPFCA 183
            V P+++  NPNQ   +R   VYTKL I  M + Y ++V+LDADT+V++NID+LF+C  FCA
Sbjct:   92 VTPISLLQNPNQVRPTRFWGVYTKLKIFNMTD-YKKVVYLDADTIVVKNIDDLFKCGKFCA 151
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BLAST of mRNA_Ecto-sp13_S_contig75983.18802.1 vs. uniprot
Match: A0A103Y931_CYNCS (Hexosyltransferase (Fragment) n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103Y931_CYNCS)

HSP 1 Score: 62.8 bits (151), Expect = 5.310e-10
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 VRPVAVETNPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTLVLENIDELFECEPFCA 183
            V P+++  NPNQ   +R   VYTKL I  M + Y ++V+LDADT+V++NID+LF+C  FCA
Sbjct:   88 VTPISLLENPNQVRPTRFWGVYTKLKIFNMTD-YKKVVYLDADTIVVKNIDDLFKCGKFCA 147
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BLAST of mRNA_Ecto-sp13_S_contig75983.18802.1 vs. uniprot
Match: A0A0D3AJS2_BRAOL (Hexosyltransferase n=11 Tax=Brassica TaxID=3705 RepID=A0A0D3AJS2_BRAOL)

HSP 1 Score: 62.8 bits (151), Expect = 5.350e-10
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 VRPVAVETNPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTLVLENIDELFECEPFCA 183
            V  +++  NPNQ   +R   VYTKL I  M + Y+++V+LDADT+V++NID+LF+C  FCA
Sbjct:   83 VEKISLLANPNQVHPTRFWGVYTKLKIFNMTD-YNKVVYLDADTIVVKNIDDLFKCSKFCA 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig75983.18802.1 vs. uniprot
Match: A0A2J6LGL3_LACSA (Hexosyltransferase n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6LGL3_LACSA)

HSP 1 Score: 62.8 bits (151), Expect = 5.350e-10
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 VRPVAVETNPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTLVLENIDELFECEPFCA 183
            V P+++  NPNQ   +R   VYTKL I  M + Y ++V+LDADT+V++NID+LF+C  FCA
Sbjct:   88 VTPISLLQNPNQVRPTRFWGVYTKLKIFNMTD-YKKVVYLDADTIVVKNIDDLFKCGKFCA 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75983.18802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVB1_9PHAE5.700e-3198.36GT8 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A836CGY7_9STRA1.220e-1662.86Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
UPI001CB97C802.090e-1050.82inositol phosphorylceramide glucuronosyltransferas... [more]
A0A2U1M1C8_ARTAN2.860e-1050.82Hexosyltransferase n=1 Tax=Artemisia annua TaxID=3... [more]
UPI001CB9B3AE3.910e-1050.82inositol phosphorylceramide glucuronosyltransferas... [more]
A0A6J1CTK2_MOMCH3.910e-1052.46Hexosyltransferase n=1 Tax=Momordica charantia Tax... [more]
A0A2U1MMV5_ARTAN4.860e-1050.82Hexosyltransferase n=1 Tax=Artemisia annua TaxID=3... [more]
A0A103Y931_CYNCS5.310e-1050.82Hexosyltransferase (Fragment) n=1 Tax=Cynara cardu... [more]
A0A0D3AJS2_BRAOL5.350e-1049.18Hexosyltransferase n=11 Tax=Brassica TaxID=3705 Re... [more]
A0A2J6LGL3_LACSA5.350e-1050.82Hexosyltransferase n=1 Tax=Lactuca sativa TaxID=42... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75983contigEcto-sp13_S_contig75983:8..190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score125.9
Seed ortholog evalue6.3e-27
Seed eggNOG ortholog2880.D8LBY2
Model size183
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0003674,GO:0003824,GO:0005488,GO:0005536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0006629,GO:0006643,GO:0006665,GO:0006672,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008466,GO:0008610,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0012505,GO:0015020,GO:0015980,GO:0016020,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0030148,GO:0030246,GO:0031410,GO:0031982,GO:0031984,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0035251,GO:0036094,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046513,GO:0046527,GO:0048029,GO:0055114,GO:0071704,GO:0097708,GO:0098791,GO:1901564,GO:1901566,GO:1901576,GO:1990482
Exons1
EggNOG free text desc.Glycosyl transferase family 8
EggNOG OGsCOG5597@1,KOG1950@2759
Cds size183
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464028.7048864-CDS-Ecto-sp13_S_contig75983:7..1901681464028.7048864-CDS-Ecto-sp13_S_contig75983:7..190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75983 8..190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75983.18802.1prot_Ecto-sp13_S_contig75983.18802.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75983 8..190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75983.18802.1

>prot_Ecto-sp13_S_contig75983.18802.1 ID=prot_Ecto-sp13_S_contig75983.18802.1|Name=mRNA_Ecto-sp13_S_contig75983.18802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
VRPVAVETNPNQNFQSRLVFVYTKLLIVEMEEEYDRIVFLDADTLVLENI
DELFECEPFCA
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mRNA from alignment at Ecto-sp13_S_contig75983:8..190-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75983.18802.1 ID=mRNA_Ecto-sp13_S_contig75983.18802.1|Name=mRNA_Ecto-sp13_S_contig75983.18802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75983:8..190- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCGACCCGTCGCGGTCGAGACAAACCCCAATCAGAACTTCCAGTCTCG
CCTGGTGTTCGTGTACACCAAGCTCCTCATCGTGGAGATGGAGGAGGAGT
ACGACCGCATAGTCTTCCTCGACGCGGACACCCTCGTGCTCGAGAACATC
GACGAGCTCTTCGAGTGCGAGCCGTTCTGCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75983:8..190-

>mRNA_Ecto-sp13_S_contig75983.18802.1 ID=mRNA_Ecto-sp13_S_contig75983.18802.1|Name=mRNA_Ecto-sp13_S_contig75983.18802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75983:8..190- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCGACCCGTCGCGGTCGAGACAAACCCCAATCAGAACTTCCAGTCTCG
CCTGGTGTTCGTGTACACCAAGCTCCTCATCGTGGAGATGGAGGAGGAGT
ACGACCGCATAGTCTTCCTCGACGCGGACACCCTCGTGCTCGAGAACATC
GACGAGCTCTTCGAGTGCGAGCCGTTCTGCGCC
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