mRNA_Ecto-sp13_S_contig7598.18801.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7598.18801.1
Unique NamemRNA_Ecto-sp13_S_contig7598.18801.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7598.18801.1 vs. uniprot
Match: A0A6H5K009_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K009_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 2.030e-53
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 3 
Query:  120 MQSPSKSLTSQAGGAAGSRVLHFGLAGTRGAEAPALVDYILLAEFDIDSGSTVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNRD 398
            MQSPSK+L SQAGGA GSRVLHFGLAGTRGAEAPALVDYILLAEFDIDSGSTVRHAYPSSVPGVSDDWFAEHMLPEGAHNH LDWTVMFLNRD
Sbjct:    1 MQSPSKNLASQAGGAGGSRVLHFGLAGTRGAEAPALVDYILLAEFDIDSGSTVRHAYPSSVPGVSDDWFAEHMLPEGAHNHPLDWTVMFLNRD 93
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BLAST of mRNA_Ecto-sp13_S_contig7598.18801.1 vs. uniprot
Match: A0A836CED8_9STRA (Docking domain of Afi1 for Arf3 in vesicle trafficking-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.250e-26
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 3 
Query:  213 EAPALVDYILLAEFDIDSGSTVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNR 395
            + P LVDYILLAEFDID+GST+RH YP  VPG  DDWFAE+MLPEGAHNH+LDWTVMFLN+
Sbjct:   26 DCPRLVDYILLAEFDIDTGSTLRHKYPGPVPGYRDDWFAEYMLPEGAHNHSLDWTVMFLNK 86
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BLAST of mRNA_Ecto-sp13_S_contig7598.18801.1 vs. uniprot
Match: A0A482RWL4_9ARCH (UDENN domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWL4_9ARCH)

HSP 1 Score: 99.0 bits (245), Expect = 4.070e-22
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 3 
Query:  204 RGAEAPALVDYILLAEFDIDSGSTVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNR 395
            RG     LVD++LLAEFDID+GST+RH YPS++PG + DWFAEHMLPEG HN   D+T +FLNR
Sbjct:   23 RGENTDQLVDFVLLAEFDIDTGSTLRHQYPSNIPGYNADWFAEHMLPEGVHNRTTDYTYIFLNR 86
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BLAST of mRNA_Ecto-sp13_S_contig7598.18801.1 vs. uniprot
Match: A0A7S3GW46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GW46_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.910e-22
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 3 
Query:  225 LVDYILLAEFDIDSGSTVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNRD 398
            LVDY++LAEFDID+GSTVRH YP+++P    DWFAE MLPEGAHN  LD+  +FLNRD
Sbjct:   19 LVDYVVLAEFDIDTGSTVRHQYPNNIPDYKADWFAEFMLPEGAHNRDLDFNYIFLNRD 76
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BLAST of mRNA_Ecto-sp13_S_contig7598.18801.1 vs. uniprot
Match: D7G403_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G403_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 8.590e-22
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 3 
Query:  270 STVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNRD 398
            STVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNRD
Sbjct:   15 STVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNRD 57
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BLAST of mRNA_Ecto-sp13_S_contig7598.18801.1 vs. uniprot
Match: A0A7S2GUJ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUJ0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.050e-21
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 3 
Query:  225 LVDYILLAEFDIDSGSTVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNRD 398
            LV++ILLAEFDID+GST+RH  P  V GV DDWFAE MLPEGAHN   DWT+ FL RD
Sbjct:   38 LVEHILLAEFDIDTGSTLRHVLPGPVAGVPDDWFAEMMLPEGAHNRDSDWTLSFLRRD 95
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BLAST of mRNA_Ecto-sp13_S_contig7598.18801.1 vs. uniprot
Match: A0A7S0SW50_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SW50_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.960e-17
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 3 
Query:  225 LVDYILLAEFDIDSGSTVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNRD 398
            LVDY+LLAEFDID+GST+RH YP+ + G  DD+FAE+MLP+GAHN   D+  + LNRD
Sbjct:   23 LVDYVLLAEFDIDTGSTLRHKYPNEIIGYKDDYFAENMLPDGAHNRDKDYNYILLNRD 80
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BLAST of mRNA_Ecto-sp13_S_contig7598.18801.1 vs. uniprot
Match: L8GKC3_ACACA (Spindle pole body interacting protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GKC3_ACACA)

HSP 1 Score: 78.2 bits (191), Expect = 3.040e-14
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  228 VDYILLAEFDIDSGSTVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNRD 398
            +++ILLAEFDID GST++H  P  +P  +DD+ A+ MLP+GA N   DWT+ FLNR+
Sbjct:    9 IEHILLAEFDIDKGSTLKHQIPGPIPNYADDFLADRMLPDGAQNQEWDWTLFFLNRE 65
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BLAST of mRNA_Ecto-sp13_S_contig7598.18801.1 vs. uniprot
Match: A0A5D6XH91_9STRA (UDENN domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH91_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.410e-13
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:  189 GLAGTRGAEAPALVDYILLAEFDIDSGSTVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNR 395
            GL    G+ A  + + +L AEFDID GST+R ++P+++P  S ++FA+ MLPEGAHN   D TV FLNR
Sbjct:    3 GLMSVAGSAAARVAEVVLFAEFDIDKGSTLRESFPTALPHYSPEFFADVMLPEGAHNRTADSTVFFLNR 71
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BLAST of mRNA_Ecto-sp13_S_contig7598.18801.1 vs. uniprot
Match: A0A5C5FTP3_9BASI (Mesa protein n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5FTP3_9BASI)

HSP 1 Score: 76.3 bits (186), Expect = 1.490e-13
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 3 
Query:  228 VDYILLAEFDIDSGSTVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNR 395
            VDY+LLAEFDID GS VRH YP+   G  +   AEHMLP+GAH+   DWTV +LN+
Sbjct:   31 VDYVLLAEFDIDQGSLVRHQYPAPT-GTDEHLLAEHMLPDGAHDRPEDWTVFYLNQ 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7598.18801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K009_9PHAE2.030e-5395.70UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CED8_9STRA3.250e-2678.69Docking domain of Afi1 for Arf3 in vesicle traffic... [more]
A0A482RWL4_9ARCH4.070e-2265.63UDENN domain-containing protein n=1 Tax=archaeon T... [more]
A0A7S3GW46_9STRA5.910e-2268.97Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
D7G403_ECTSI8.590e-22100.00UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2GUJ0_9STRA5.050e-2170.69Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0SW50_9STRA1.960e-1763.79Hypothetical protein (Fragment) n=2 Tax=Chromulina... [more]
L8GKC3_ACACA3.040e-1454.39Spindle pole body interacting protein n=1 Tax=Acan... [more]
A0A5D6XH91_9STRA1.410e-1350.72UDENN domain-containing protein n=1 Tax=Pythium br... [more]
A0A5C5FTP3_9BASI1.490e-1360.71Mesa protein n=1 Tax=Rhodotorula diobovata TaxID=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7598contigEcto-sp13_S_contig7598:3700..5498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score100.1
Seed ortholog evalue5.6e-19
Seed eggNOG ortholog2880.D7G403
Model size400
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000282,GO:0000910,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0005933,GO:0005935,GO:0007049,GO:0007163,GO:0008150,GO:0009987,GO:0016020,GO:0022402,GO:0030010,GO:0030427,GO:0030447,GO:0030448,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0051179,GO:0051301,GO:0051641,GO:0051666,GO:0061640,GO:0071944,GO:1903047
Exons2
EggNOG free text desc.actin cortical patch localization
EggNOG OGs2CMMJ@1,2QQUZ@2759
Cds size279
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464028.6390617-CDS-Ecto-sp13_S_contig7598:3699..38261681464028.6390617-CDS-Ecto-sp13_S_contig7598:3699..3826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7598 3700..3826 -
1681464028.6580043-CDS-Ecto-sp13_S_contig7598:5227..53791681464028.6580043-CDS-Ecto-sp13_S_contig7598:5227..5379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7598 5228..5379 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464028.670351-UTR-Ecto-sp13_S_contig7598:5379..54981681464028.670351-UTR-Ecto-sp13_S_contig7598:5379..5498Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7598 5380..5498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7598.18801.1prot_Ecto-sp13_S_contig7598.18801.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7598 3700..5379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7598.18801.1

>prot_Ecto-sp13_S_contig7598.18801.1 ID=prot_Ecto-sp13_S_contig7598.18801.1|Name=mRNA_Ecto-sp13_S_contig7598.18801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
MQSPSKSLTSQAGGAAGSRVLHFGLAGTRGAEAPALVDYILLAEFDIDSG
STVRHAYPSSVPGVSDDWFAEHMLPEGAHNHALDWTVMFLNRD
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mRNA from alignment at Ecto-sp13_S_contig7598:3700..5498-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7598.18801.1 ID=mRNA_Ecto-sp13_S_contig7598.18801.1|Name=mRNA_Ecto-sp13_S_contig7598.18801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1799bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7598:3700..5498- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGTGGGCTGCTGATACTTGTGGTGGGGGGCAGAGGTTGGCTGCTGCCT
GCCCGGTGCAGGCTACGGCTCGTGGGAGATTTTTGATTGTTTCCGCGAGC
GGGTTTTGCAACTGCCGGAATGCAGAGCCCCTCGAAGAGCCTGACATCGC
AGGCTGGAGGAGCGGCGGGCTCCCGGGTGCTACACTTCGGATTGGCCGGT
ACGAGGGGAGCCGAGGCGCCCGCGCTCGTGGACTATATCCTCTTGGCGGA
GTTTGACATCGACAGTGGCAGGTGAAACCATTGTATGCTATTACAAGGCT
ATTAATATATTAGCTTCAAAAACATGATGAGTTTGATTCGTCAGCGGGGA
GCGAGGCAGGGAAAAAAAAAGGAAAAAGTAGTGTCGTCCACACAGAGTAG
TCGTACATGTTAGGTGTTGACGCGAACCCCATGCTTGGTGAACGTCAAAG
CAGTGTCGCCAATCAGCGGATAGCGTGGTGTCACACGGATCCAGTCGGTA
TTGCTCTATGCTCGATGGGTAGGTTCTCCAACCGTTTTTCTTAGACACGC
TCCCTGCTTACCCCTGCTGTATTGGTATGCACATTATGTGTAGATGTTCT
CTCTTCGTCCCTGCGGCCCTTTCGGTCCATACCCCTATCTGGACCAGCCA
GAGGGAACCAATACATGAACGACATGTTGATATGTCTTTATGACGTCCCT
TGCACCAGGATCACCCAGAATTTGTACTCTGCTGTAGCGCGGGCAACCAA
GCAAGCAGCGCTGCGCCACAAATGCTGCGCTCGTTTACCGATGGAGATTG
CAACCAATTTTGCGAACGTTTTGTTGCAGCGACCAAACTGCTGCGCAGCT
ACTTCTCGCTTTTTCTTTTTCTGGAGCCGCGCACCTGAAGACTTGGCAAA
TGTTTTTCTTTCGAGGGCACACACCAACAACTCTTTTGTATTCCGAATGT
CCGCAGCTCGTTGTGAACTGAAAACTTTTCCGTGGACCACGTTGCACCAG
AATTTTTTCGGGCGACCGGCTAAAACAAACGCCCTCATGCGTGGGGCGCG
CACACCTGGGTGCGGGGTCATCAGCAGTAGTCAGTCTACACCGCCACGCA
ATTGGTCGCATCCTTTGGTGGCGGGATAACAGGCAGGCAGCTTGCAGCTT
GCCGCTGGGAAGCCGACGAAAGAGAAAGTTTTTCGCAACTCTACGCATGC
AACAACAGATCCGAATTTCCCCAGACTACCGACAAGTCTGTGTTGCTTCC
ACGTGTCATGAAGCAGCAGGCCAGCCCCCAATGTTCCCCGCGATATGCAT
ACCGGTAGCGGAAAAGAAAAGAAGGCAACCATATGAATGCGTCGCAGTTT
TCTCTCATGTTTTGCGTACGTATGGCGTGGTACAGAGTTCAACCCGAGTT
TTGCGCACTACATAAATCCATAGTGCTGTTTTTACCTCTACAAAATGAAC
GCAACCACACACGACAGTAGTGAAAGAGCCGGCGGAAAATTACGCCAATG
TCAGGGCAGCACTGGTGTAGTGTTGCATGACTACGCCGTGTGTACGCATA
CTGACCTCCGAGCGACATGCAGAGATTGATATTCCTCACCCCCAACCCCA
CCCGTTTTTAACCCTTTTTTCTTTGTGCATGCGGGCAACAACAACAACCG
ACACGAATCGGCCTTATTTTAGCACCGTGAGACATGCCTACCCCAGCTCG
GTGCCGGGAGTGTCGGACGACTGGTTCGCGGAGCACATGCTCCCGGAGGG
CGCCCACAACCACGCTCTCGACTGGACTGTAATGTTTCTCAACCGCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7598:3700..5498-

>mRNA_Ecto-sp13_S_contig7598.18801.1 ID=mRNA_Ecto-sp13_S_contig7598.18801.1|Name=mRNA_Ecto-sp13_S_contig7598.18801.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7598:3700..5498- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGCCCCTCGAAGAGCCTGACATCGCAGGCTGGAGGAGCGGCGGG
CTCCCGGGTGCTACACTTCGGATTGGCCGGTACGAGGGGAGCCGAGGCGC
CCGCGCTCGTGGACTATATCCTCTTGGCGGAGTTTGACATCGACAGTGGC
AGCACCGTGAGACATGCCTACCCCAGCTCGGTGCCGGGAGTGTCGGACGA
CTGGTTCGCGGAGCACATGCTCCCGGAGGGCGCCCACAACCACGCTCTCG
ACTGGACTGTAATGTTTCTCAACCGCGAC
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