mRNA_Ecto-sp13_S_contig7585.18786.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7585.18786.1
Unique NamemRNA_Ecto-sp13_S_contig7585.18786.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7585.18786.1 vs. uniprot
Match: D7FH38_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH38_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 5.240e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 TPLHRAVLGGHSEVARVLIKAGADKDARTGGSGA 102
            TPLHRAVLGGHSEVARVLIKAGADKDARTGGSGA
Sbjct:  125 TPLHRAVLGGHSEVARVLIKAGADKDARTGGSGA 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7585.18786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH38_ECTSI5.240e-12100.00Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7585contigEcto-sp13_S_contig7585:7007..7129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score67.0
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog2880.D7FH38
Model size123
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size123
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464027.5556037-CDS-Ecto-sp13_S_contig7585:7006..71291681464027.5556037-CDS-Ecto-sp13_S_contig7585:7006..7129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7585 7007..7129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7585.18786.1prot_Ecto-sp13_S_contig7585.18786.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7585 7007..7129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7585.18786.1

>prot_Ecto-sp13_S_contig7585.18786.1 ID=prot_Ecto-sp13_S_contig7585.18786.1|Name=mRNA_Ecto-sp13_S_contig7585.18786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
TPLHRAVLGGHSEVARVLIKAGADKDARTGGSGATPLHLAA
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mRNA from alignment at Ecto-sp13_S_contig7585:7007..7129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7585.18786.1 ID=mRNA_Ecto-sp13_S_contig7585.18786.1|Name=mRNA_Ecto-sp13_S_contig7585.18786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7585:7007..7129+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCCGCTTCACCGGGCGGTGTTGGGAGGGCACAGCGAGGTAGCCCGCGT
CTTAATCAAGGCGGGCGCGGACAAGGACGCCAGGACCGGCGGAAGCGGCG
CCACTCCGCTTCATCTCGCCGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7585:7007..7129+

>mRNA_Ecto-sp13_S_contig7585.18786.1 ID=mRNA_Ecto-sp13_S_contig7585.18786.1|Name=mRNA_Ecto-sp13_S_contig7585.18786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7585:7007..7129+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCCGCTTCACCGGGCGGTGTTGGGAGGGCACAGCGAGGTAGCCCGCGT
CTTAATCAAGGCGGGCGCGGACAAGGACGCCAGGACCGGCGGAAGCGGCG
CCACTCCGCTTCATCTCGCCGCT
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