mRNA_Ecto-sp13_S_contig7572.18773.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7572.18773.1
Unique NamemRNA_Ecto-sp13_S_contig7572.18773.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7572.18773.1 vs. uniprot
Match: D7FR82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR82_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 4.650e-87
Identity = 149/186 (80.11%), Postives = 160/186 (86.02%), Query Frame = 1 
Query:    1 QPSKRQSWPWHGKKVKVSAAQNNQRQRLKPLLLRLLPLAVGGSVLLSLYCLLSFFVVEWPHNDRVHLVLLSSIGGVVLVEAAESAIKTFGGVHPAVAHFRANASTYMASFVILVVVVTQGVWSRIGDLRSSLAMLACCFLVHHVAPLLGGHQPEGGISPRPAQSSD---AFFFGSGIGKPLKSASP 549
            QPSKRQSWPWHGKK KVSAAQNNQRQ+LKPLL  LLPLAV G+VLL LYCL SFFVVEWPH+DRV LVLL  IGGVVLVEAAESAIK FGGVHPAVAHFRA+ASTYMASFVI+VVVVTQGVWSRIGDLRSSLA+L+C FLV+ VAPLLGGHQPEGG+SPRPAQ SD   +  F   I K +K   P
Sbjct:   12 QPSKRQSWPWHGKKAKVSAAQNNQRQQLKPLLQWLLPLAVSGAVLLGLYCLFSFFVVEWPHDDRVLLVLLCYIGGVVLVEAAESAIKRFGGVHPAVAHFRADASTYMASFVIVVVVVTQGVWSRIGDLRSSLAVLSCGFLVYQVAPLLGGHQPEGGVSPRPAQGSDGGHSLPFRKRIWKAVKKCIP 197
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BLAST of mRNA_Ecto-sp13_S_contig7572.18773.1 vs. uniprot
Match: A0A6H5JQP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQP3_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 1.500e-74
Identity = 133/168 (79.17%), Postives = 144/168 (85.71%), Query Frame = 1 
Query:    1 QPSKRQSWPW--HGKKVKVSAAQNNQRQRLKPLLLRLLPLAVGGSVLLSLYCLLSFFVVEWPHNDRVHLVLLSSIGGVVLVEAAESAIKTFGGVHPAVAHFRANASTYMASFVILVVVVTQGVWSRIGDLRSSLAMLACCFLVHHVAPLLGGHQPEGGISPRPAQSSD 498
            Q SKR+SW W  H  + K SAAQNNQRQ+LKPLL RLLPLAV G+VLL LYCL SFFVVEWPHNDRV LVLL  IGGVVLVEAAESAI+ F G+H AVAHFRA+ASTYMASFVI+V VV Q V+S  GDLRSSLA+LAC FLVHHVAPLLGGHQPEGG+SPRPAQSSD
Sbjct:   12 QRSKRKSWRWRWHATEAKFSAAQNNQRQKLKPLLQRLLPLAVSGAVLLGLYCLFSFFVVEWPHNDRVLLVLLCYIGGVVLVEAAESAIEWFKGLHTAVAHFRASASTYMASFVIIVAVVPQDVYSGAGDLRSSLAVLACGFLVHHVAPLLGGHQPEGGVSPRPAQSSD 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7572.18773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR82_ECTSI4.650e-8780.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQP3_9PHAE1.500e-7479.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7572contigEcto-sp13_S_contig7572:3681..6639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score61.2
Seed ortholog evalue4.5e-07
Seed eggNOG ortholog2880.D8LEI4
Model size1382
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG free text desc.solute:proton antiporter activity
EggNOG OGsCOG0475@1,KOG1650@2759
Cds size438
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464026.6264458-UTR-Ecto-sp13_S_contig7572:3680..39941681464026.6264458-UTR-Ecto-sp13_S_contig7572:3680..3994Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7572 3681..3994 +
1681464026.6385653-UTR-Ecto-sp13_S_contig7572:4347..46301681464026.6385653-UTR-Ecto-sp13_S_contig7572:4347..4630Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7572 4348..4630 +
1681464026.651461-UTR-Ecto-sp13_S_contig7572:5854..61671681464026.651461-UTR-Ecto-sp13_S_contig7572:5854..6167Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7572 5855..6167 +
1681464026.6718283-UTR-Ecto-sp13_S_contig7572:6605..66391681464026.6718283-UTR-Ecto-sp13_S_contig7572:6605..6639Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7572 6606..6639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464026.660794-CDS-Ecto-sp13_S_contig7572:6167..66051681464026.660794-CDS-Ecto-sp13_S_contig7572:6167..6605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7572 6168..6605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7572.18773.1prot_Ecto-sp13_S_contig7572.18773.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7572 6168..6605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7572.18773.1

>prot_Ecto-sp13_S_contig7572.18773.1 ID=prot_Ecto-sp13_S_contig7572.18773.1|Name=mRNA_Ecto-sp13_S_contig7572.18773.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MQQNAPEAAASAQYKGSSGSTTWANKAFECLRCVGYVAAWTLLLLCTELG
HHESFAGILVVVLAVPIVTFRSRCEITWRGLMLVFSVTLLAIINSQGSLC
EALSHFRGFQPSGVQRRRRPLSVAPLHPEVFLSFHPELSRFLGTP*
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mRNA from alignment at Ecto-sp13_S_contig7572:3681..6639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7572.18773.1 ID=mRNA_Ecto-sp13_S_contig7572.18773.1|Name=mRNA_Ecto-sp13_S_contig7572.18773.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2959bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7572:3681..6639+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCCTCGAAACGTCAGTCATGGCCGTGGCACGGGAAAAAAGTAAAGGT
CTCAGCAGCGCAAAACAATCAGCGGCAGCGACTTAAACCGCTGTTGCTGC
GGCTTCTTCCTCTTGCCGTTGGCGGTTCTGTGCTGCTTAGCCTCTACTGC
CTGTTATCTTTTTTCGTGGTAGAATGGCCCCACAATGATCGGGTGCACCT
CGTGCTGCTGAGCTCCATTGGTGGAGTGGTCTTGGTCGAAGCCGCCGAAA
GTGCCATCAAAACGTTTGGGGGCGTACATCCGGCTGTCGCTCATTTTAGG
GCCAACGCTTCCACGTGAGTTTGCGCTGCTGCTCTCTCTGTTCCCAGAAA
ATATCGCCACCGCTGCTCGATCGTCTGCGTGCCTGCCACAGAGGCCATCA
GTCCGCGAGTAGATTCACTTTCCTCGGGGAGATAGGTCAAATTCCTCCCG
TCGCTATTCCCTTTGGGCCCTAAGCTAGTCCCAATGGGATGGCGTGCGCT
GGTTCTCTGAAAACAGGAACGTTGTACAGCAGTTTTGGTGGCAAGCCTCG
CTGTATGCAAGTTCAGACCTCAACCCTGTTTCCGAAGCCAAGCAAATGCC
AAGAATTTTCCGATACTTCGAGTTAATCACCCCCGACCAACCCATCTCAC
TCGGCTCTCCCTGGCAGGTACATGGCGTCCTTCGTGATATTAGTGGTGGT
AGTCACGCAGGGCGTGTGGAGCAGAATAGGAGACCTCCGGTCTTCTCTCG
CTATGCTTGCCTGTTGCTTCCTCGTTCATCACGTTGCACCGCTTCTCGGC
GGTCACCAACCGGAAGGCGGGATATCTCCTCGGCCAGCCCAGAGCAGTGA
TGCCTTCTTTTTCGGAAGCGGCATTGGAAAGCCGTTGAAAAGTGCATCCC
CACCGCCGTTGGCGTCTTGCTGTCCACTGCGGCCACCTTCGTGACAGGTG
GTTTGGTACTGTTGTGTTCGTCGTGAAACGAACAGGAGGGTTTGTTAGGG
CCAGCCCATGTTGTGGAACTGGCGAAAGTCGAAACGACATGATCTACAGC
AGAGTTAAAAACCTTACGCGTGATCAGCGCCTGCGTTTAGCACGTGCGAT
GGGGCCGAAAGAGGTTATCCCGAGAAGAACACCATCGACTTCTGGGACGT
CCTGTGTCGTCGTGGTGACACCCACGTGTTCTGGACTGCATGAAGAAGTT
ATTCGGCACACACAACTCCTGTTTGACGTACAGTGCAGGCTATCGAGATA
GACTGTACATAGATAGGGCCCGGAGATAAGAAACGTCAATAGTGGGTCGA
GCCTCAATTTCTTGTTCTGGGCAGGAGGACCAGCCGAAGTCGTCCAGTTT
CTTTGAACGGGTTTCTTAATCCTTTGGCCTGTCGAATCCTGCTGATTTCA
TACTTTCTTATTTTATATTTCTGGCGAAGGAAGCAACAACACACCAAGTC
GTCATACACAACAAGTAAACCGACAACGCGGTGTGGCGAACATCGGGGGT
TGTGGCAGTACAGCAGCAGTGAGTGGCGCAGCCGCGACGGCGCTGGGGCA
CGAGGGGTGCCGCGAACATAACCCCCTCCCCCTACCAAAAAGTTACATGA
CGTGAACGAGGTAGGAGATGGGAGCATGGCAGCAGCAGCAGAAGTGGGGC
GCTTCTCAATGGACACGCCCCCCCCCAACTTCTCTCCTTTGTGTCTTTTG
TCTGGGGTATAGCACGATCGATCATGTTCCTCATGTTTTCTTATGTTACG
GTGGAGATTGAGNNNNNNNNNNCGTCATGTAACTTTTTGAGGGGTGCCGC
GAACATAACCCCCTCCCCCTACCAAAAAGTTACATGACGTGAACGAGGTA
GGAGATGGGAGCATGGCAGCAGCAGCAGCAGTGGGGCGCTTCTCAATGGA
CACGCCCCCCCCCCAACTTCTCTCCTTTGTGTCTTTTGTCTGGGGTATAG
CACGATCGATCATGTTCCTCATGTTTTCTTATGTTACGGTGGAGATTGAG
CTGTGTTCCTCAGCCCTGTTTTCTTGTTTTCCACAAAATTCCGAGCCTTT
TTTCTTGAAAATTGTTCGTAATTGCGGGCCCCATCTGTAACGCTGCGTGC
ACCCTAACACCGATCAAACGATGTCTTTGCCCCCCTCGATGCTCTCCTGT
GCCATTTTCCCGCGACGCCTCCAGGTGGTGGATTGTTACTCGGGCTTGAG
ATAGCCAGGGCTACGTTGACCGCTTTCCAAGAAATGCGCCTGGCGATTCG
CGAGGGGCGGCCAGAGACGCAGGAAACGTCCTCCTAGACTCAAGATATTC
CTCTGCAAGGTGTCGTAACGTTGTTCACACTTCAGGACCAACACGTCGTG
TATGGTCTCCCGTCCTACTGCTCACCCTCCTGCTCTGGGTCGCGTACCGC
ACAGTATGCTCGTGGCCAGAGGAGTGCACGGACTGGCTGGTGTTTCTGCT
GAAGGCATCGGCGACGACTGTGTGCACCACGCACCTCATGCAACAAAATG
CGCCTGAGGCTGCCGCATCGGCGCAGTACAAGGGAAGTAGCGGTTCCACC
ACGTGGGCCAACAAGGCTTTCGAGTGCTTGCGTTGCGTGGGTTACGTGGC
CGCGTGGACTCTCCTCCTGCTGTGCACAGAGTTGGGCCACCACGAAAGCT
TCGCAGGAATTCTGGTGGTGGTTCTTGCCGTCCCTATCGTGACCTTCCGA
AGTCGTTGCGAGATAACCTGGCGCGGGTTGATGCTAGTGTTTTCGGTGAC
TCTGCTGGCGATAATAAATAGTCAGGGTAGCCTGTGTGAAGCTCTTTCAC
ATTTTCGAGGTTTTCAACCGAGTGGGGTCCAAAGACGTCGTCGCCCCCTC
TCGGTGGCCCCGCTTCATCCTGAGGTGTTTCTATCGTTTCATCCAGAGTT
ATCAAGATTTCTCGGAACTCCGTGAACAAGAACGTGCCGATAGTTGGTCT
GTTTGCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7572:3681..6639+

>mRNA_Ecto-sp13_S_contig7572.18773.1 ID=mRNA_Ecto-sp13_S_contig7572.18773.1|Name=mRNA_Ecto-sp13_S_contig7572.18773.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7572:3681..6639+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACAAAATGCGCCTGAGGCTGCCGCATCGGCGCAGTACAAGGGAAG
TAGCGGTTCCACCACGTGGGCCAACAAGGCTTTCGAGTGCTTGCGTTGCG
TGGGTTACGTGGCCGCGTGGACTCTCCTCCTGCTGTGCACAGAGTTGGGC
CACCACGAAAGCTTCGCAGGAATTCTGGTGGTGGTTCTTGCCGTCCCTAT
CGTGACCTTCCGAAGTCGTTGCGAGATAACCTGGCGCGGGTTGATGCTAG
TGTTTTCGGTGACTCTGCTGGCGATAATAAATAGTCAGGGTAGCCTGTGT
GAAGCTCTTTCACATTTTCGAGGTTTTCAACCGAGTGGGGTCCAAAGACG
TCGTCGCCCCCTCTCGGTGGCCCCGCTTCATCCTGAGGTGTTTCTATCGT
TTCATCCAGAGTTATCAAGATTTCTCGGAACTCCGTGA
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