mRNA_Ecto-sp13_S_contig7552.18746.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7552.18746.1
Unique NamemRNA_Ecto-sp13_S_contig7552.18746.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7552.18746.1 vs. uniprot
Match: D8LEK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEK6_ECTSI)

HSP 1 Score: 451 bits (1159), Expect = 1.740e-158
Identity = 226/240 (94.17%), Postives = 230/240 (95.83%), Query Frame = 1 
Query:    1 MSSTPPKTXXXXXXXLDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTMMQVEGKKGFPALVNKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQAHTEGVT 720
            MSST PK        LDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESY+STKNLPVGAKTLCASVAAALWRIFLMPVDTTKT+MQVEGK+GFPALV KVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQ+HTEGVT
Sbjct:    1 MSSTSPKAPPTTQEILDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYESTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTIMQVEGKEGFPALVKKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVT 240
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BLAST of mRNA_Ecto-sp13_S_contig7552.18746.1 vs. uniprot
Match: A0A835ZPC0_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPC0_9STRA)

HSP 1 Score: 343 bits (881), Expect = 1.370e-116
Identity = 170/240 (70.83%), Postives = 197/240 (82.08%), Query Frame = 1 
Query:    1 MSSTPPKTXXXXXXXLDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTMMQVEGKKGFPALVNKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQAHTEGVT 720
            M+S   ++       L+K+L++ALGGG AGA AM +NVGTLMW+RT +NYQ RHG  T  A   LY +GGI RFYRGV PAL+QGP+SRFGDTAANTGVLAL+ES DSTK LPVG KTLCAS AAALWRI LMP+DTTKT+MQVEGK GFPAL  K K  GP+VLYHGA+AAS+AT VGHYPWFFTYNYLQERIPK+ + ++KLARN +IGF SS+VSDTCSNSIRV+KVYKQ+ TE VT
Sbjct:    1 MASASSQSAPSASEVLNKALRKALGGGLAGASAMVMNVGTLMWLRTAMNYQYRHGTSTRAAITHLYKEGGIPRFYRGVVPALVQGPLSRFGDTAANTGVLALLESMDSTKGLPVGVKTLCASGAAALWRIVLMPIDTTKTIMQVEGKNGFPALKKKFKANGPSVLYHGAIAASAATFVGHYPWFFTYNYLQERIPKETATLRKLARNAVIGFASSLVSDTCSNSIRVIKVYKQSSTEPVT 240
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BLAST of mRNA_Ecto-sp13_S_contig7552.18746.1 vs. uniprot
Match: A0A7S2V2G3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G3_9STRA)

HSP 1 Score: 317 bits (813), Expect = 2.760e-106
Identity = 157/239 (65.69%), Postives = 182/239 (76.15%), Query Frame = 1 
Query:    1 MSSTPPKTXXXXXXXLDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTMMQVEGKKGFPALVNKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQAHTEGV 717
            M++T  K        L K+  RALGGG AGA+AMG+NV TL+W+RTT+NYQ R+G  T +A + LY +GG+ RFY+G  PAL+QGPMSRFGDTAANTG LALM+SYDST+NLP   KT+ AS  AA+WRIFLMPVDT KT MQVEG KG   L  K K GGPTVLYHGALAAS+AT VGHYPWF T+N L  RIPK D   KKL RN  IGFC+S++SDTCSNSIRVVKVY+Q H E V
Sbjct:    1 MATTTAKPQLSTSEILQKAANRALGGGIAGAMAMGVNVTTLIWLRTTMNYQYRYGTTTTEALKALYKEGGVLRFYKGYLPALVQGPMSRFGDTAANTGTLALMDSYDSTRNLPAAVKTVSASATAAIWRIFLMPVDTLKTTMQVEGSKGVGQLAAKFKAGGPTVLYHGALAASTATFVGHYPWFTTFNILNARIPKYDDLPKKLMRNAFIGFCASLISDTCSNSIRVVKVYRQTHPEKV 239
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BLAST of mRNA_Ecto-sp13_S_contig7552.18746.1 vs. uniprot
Match: A0A7S3V5E4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5E4_9STRA)

HSP 1 Score: 311 bits (796), Expect = 9.870e-104
Identity = 155/239 (64.85%), Postives = 182/239 (76.15%), Query Frame = 1 
Query:    1 MSSTPPKTXXXXXXXLDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTMMQVEGKKGFPALVNKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQAHTEGV 717
            MS    +T       LDK+ K AL GG AGA AMG NV  LMWMRTT+NYQ R+G     A +TLY+ GGI RFYRGV PAL QGP+SRFGDTAANTGVL L+ S+DSTK++ VG KT+CAS AAA WRI LMP+DT KT MQV G   F  +VNK+K  GPTVLYHG+LA++SAT VGHYPWFFTYNYL E+IPKQD  +++L R  I+GFCSS +SDTCSNSIR+VKVYKQ+ TE +
Sbjct:    1 MSKKTEETPATLSEILDKAAKSALRGGTAGACAMGANVACLMWMRTTVNYQYRNGTTFPVALKTLYADGGIPRFYRGVLPALAQGPLSRFGDTAANTGVLTLLNSFDSTKDMGVGVKTVCASAAAAAWRICLMPIDTVKTTMQVTGS--FSNVVNKIKASGPTVLYHGSLASASATFVGHYPWFFTYNYLSEKIPKQDDQLRELGRRAILGFCSSAISDTCSNSIRIVKVYKQSSTEAI 237
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BLAST of mRNA_Ecto-sp13_S_contig7552.18746.1 vs. uniprot
Match: A0A0L0FNE2_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FNE2_9EUKA)

HSP 1 Score: 306 bits (783), Expect = 1.300e-101
Identity = 150/215 (69.77%), Postives = 173/215 (80.47%), Query Frame = 1 
Query:   61 KRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTMMQVEGKKGFPALVNKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPK--QDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQ 699
            KRA+GGG  GA+AMGINV +LMW+RTT+NYQ R+G  T +AF+ LY +GGI RFYRG GPAL QGP+SRFGDTAAN GVLAL++SYD+T NLPVG KT+ AS AAA WR+FLMPVDT KT MQVEG KG   L  K+  GGP VLY GA+AAS AT VGHYPWFF YN LQE++PK  +D  +KKL RN +IGFC+SVVSDTCSNSIRVVK  KQ
Sbjct:   27 KRAIGGGVPGAVAMGINVTSLMWLRTTMNYQYRYGTSTTEAFKHLYKEGGIRRFYRGYGPALFQGPLSRFGDTAANAGVLALLDSYDTTSNLPVGVKTIFASAAAATWRVFLMPVDTLKTTMQVEGAKGVSQLRGKLSSGGPKVLYSGAIAASGATFVGHYPWFFVYNLLQEKLPKAEKDETLKKLGRNAVIGFCASVVSDTCSNSIRVVKTTKQ 241
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BLAST of mRNA_Ecto-sp13_S_contig7552.18746.1 vs. uniprot
Match: B8C9G2_THAPS (Uncharacterized protein n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8C9G2_THAPS)

HSP 1 Score: 303 bits (777), Expect = 8.380e-101
Identity = 153/219 (69.86%), Postives = 178/219 (81.28%), Query Frame = 1 
Query:   46 LDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTMMQVEGKKGFPALVNKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQA 702
            LDK+ K A+ GG AGA+AMG+NVG LMWMRTT+NYQ R+G     A +TLY+ GGI RFYRGV PALIQGP+SRFGDTAANTG+L LM S+D+TK+L VG KT+ AS AAA +RIFLMPVDT KT MQV GK  F  +VNKVK+ G   LYHG+LAA+SAT VGHYPWFFTYNYL E+IPKQD  +K+L R  I+GFCSS VSDTCSNSIRV+KVYKQ+
Sbjct:   19 LDKAAKSAMRGGTAGAVAMGLNVGALMWMRTTVNYQYRNGTSFPVALKTLYADGGIPRFYRGVLPALIQGPLSRFGDTAANTGMLTLMNSFDATKDLNVGYKTVAASGAAAAFRIFLMPVDTVKTTMQVTGK--FSNVVNKVKIEGIPALYHGSLAAASATFVGHYPWFFTYNYLSEKIPKQDDPLKELGRRAILGFCSSAVSDTCSNSIRVIKVYKQS 235
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BLAST of mRNA_Ecto-sp13_S_contig7552.18746.1 vs. uniprot
Match: A0A7S1BP81_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BP81_9STRA)

HSP 1 Score: 303 bits (775), Expect = 1.430e-100
Identity = 154/223 (69.06%), Postives = 179/223 (80.27%), Query Frame = 1 
Query:   52 KSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTMMQVEGKKGFPALVNKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQAHTEGVT 720
            K+ K A+ GG AGALAMG NVG LMWMRTTINYQ R+G     A RTLY+ GGI RFYRGV PALIQGPMSRFGDTAANTG++ LM SYDSTKNL VG KT+ AS +AAL+RIFLMPVDT KT MQVEG   F A+V KVK+GG   LY G+LAA+SAT VGHYPWFFTYNYL +++ ++++ + KL R  +IGFCSS +SDTCSNSIRVVKVYKQAH + +T
Sbjct:   15 KAGKSAMRGGTAGALAMGANVGALMWMRTTINYQYRNGTSFPVALRTLYADGGIPRFYRGVLPALIQGPMSRFGDTAANTGMMTLMNSYDSTKNLAVGVKTISASASAALFRIFLMPVDTCKTTMQVEGN--FGAVVKKVKIGGVPALYQGSLAAASATFVGHYPWFFTYNYLSDKLEERETTLGKLGRRALIGFCSSAISDTCSNSIRVVKVYKQAHKDVLT 235
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BLAST of mRNA_Ecto-sp13_S_contig7552.18746.1 vs. uniprot
Match: A0A7R9YEQ5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEQ5_9STRA)

HSP 1 Score: 303 bits (776), Expect = 3.420e-100
Identity = 156/226 (69.03%), Postives = 182/226 (80.53%), Query Frame = 1 
Query:   46 LDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTMMQVEGKKGFPALVNKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPK-QD-SGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQAHTEGV 717
            L+K++KRA GGG AGA AM INVGTLMW+RTT+NYQ R+G GT+ A + LY++GGI RFYRGV PAL+QGP+SRFGDTAANTGV+ LM+SYDSTK+LP   KT  AS+AAA WRIFLMP+DT KT +QVEG++    L  KV   GP VLY GALAA+SAT VGHYPWF TYN LQE IPK QD   +KK  RN +IGFCSSVVSDTCSNSIRVVKVYKQ++ E +
Sbjct:   46 LNKAIKRASGGGAAGAAAMFINVGTLMWLRTTVNYQYRYGTGTVTALKKLYAEGGIPRFYRGVLPALVQGPLSRFGDTAANTGVMVLMDSYDSTKDLPAVVKTGGASLAAACWRIFLMPIDTVKTTLQVEGRQALSQLFKKVGNHGPHVLYAGALAAASATFVGHYPWFATYNTLQETIPKPQDHETLKKFGRNAMIGFCSSVVSDTCSNSIRVVKVYKQSNAEAL 271
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BLAST of mRNA_Ecto-sp13_S_contig7552.18746.1 vs. uniprot
Match: A0A7S2WCX6_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WCX6_9STRA)

HSP 1 Score: 303 bits (777), Expect = 4.200e-100
Identity = 151/226 (66.81%), Postives = 180/226 (79.65%), Query Frame = 1 
Query:   46 LDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTMMQVEGKKGFPALVNKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPK--QDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQAHTEGV 717
            L+K+ KRALGGG  GA+AMGI VG+LMW+RTT+NYQ R+G  T  A +TLY +GGI RFYRGVGPALIQGPMSRFGDTAAN G+L+L+ S +ST++LPV AKT CAS AA LWR+FLMPVDT KT++QVEG KG   L NK+K GGP V+YHGA+ A+ AT+VGHYPWFFT+N LQE+IP   +D   KKLARN +IGFCSS VSD  SNSIRV+K  KQ   E +
Sbjct:   63 LEKAGKRALGGGLPGAMAMGIQVGSLMWLRTTMNYQYRYGTSTKVALQTLYKEGGIRRFYRGVGPALIQGPMSRFGDTAANAGMLSLLNSQESTRDLPVAAKTACASFAAGLWRVFLMPVDTLKTVLQVEGTKGPGVLKNKIKSGGPFVMYHGAVGAAGATMVGHYPWFFTFNTLQEKIPMPGEDEVGKKLARNALIGFCSSFVSDCTSNSIRVIKTTKQTSRETI 288
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BLAST of mRNA_Ecto-sp13_S_contig7552.18746.1 vs. uniprot
Match: A0A7S2A6F7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6F7_TRICV)

HSP 1 Score: 299 bits (766), Expect = 3.790e-99
Identity = 152/224 (67.86%), Postives = 177/224 (79.02%), Query Frame = 1 
Query:   46 LDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTMMQVEGKKGFPALVNKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQAHTEGV 717
            L+K+   A+ GG AGA AMG NV  LMWMRTT+NYQ R+G     A RTLY+ GGI RFYRGV PALIQGP+SRFGDTAANTGVL LM S D+TK+L VG KT+ AS AAA +RIFLMPVDT KT MQV GK  F A+V+KVK+GG   LY G+LAA+SAT VGHYPWFFTYNYL E+IPKQD+ + +L R  ++GFCSS +SDTCSNSIRVVKVYKQ+H E +
Sbjct:   17 LNKAAASAVRGGTAGACAMGANVACLMWMRTTVNYQYRNGTSFPVALRTLYADGGIPRFYRGVAPALIQGPLSRFGDTAANTGVLTLMNSMDATKDLSVGFKTVAASGAAAAFRIFLMPVDTVKTTMQVTGK--FGAVVDKVKIGGVPALYQGSLAAASATFVGHYPWFFTYNYLSEKIPKQDTQLAELGRRALLGFCSSAISDTCSNSIRVVKVYKQSHPENL 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7552.18746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEK6_ECTSI1.740e-15894.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZPC0_9STRA1.370e-11670.83Mitochondrial carrier domain-containing protein n=... [more]
A0A7S2V2G3_9STRA2.760e-10665.69Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3V5E4_9STRA9.870e-10464.85Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A0L0FNE2_9EUKA1.300e-10169.77Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
B8C9G2_THAPS8.380e-10169.86Uncharacterized protein n=2 Tax=Thalassiosirales T... [more]
A0A7S1BP81_9STRA1.430e-10069.06Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7R9YEQ5_9STRA3.420e-10069.03Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WCX6_9STRA4.200e-10066.81Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S2A6F7_TRICV3.790e-9967.86Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7552contigEcto-sp13_S_contig7552:1738..7423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score452.2
Seed ortholog evalue1.5e-124
Seed eggNOG ortholog2880.D8LEK6
Model size720
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Mitochondrial carrier protein
EggNOG OGs28MPG@1,2QU7F@2759
Cds size720
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7552.18746.1prot_Ecto-sp13_S_contig7552.18746.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7552 1738..7423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464024.1120913-CDS-Ecto-sp13_S_contig7552:1737..18621681464024.1120913-CDS-Ecto-sp13_S_contig7552:1737..1862Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7552 1738..1862 +
1681464024.1228716-CDS-Ecto-sp13_S_contig7552:3027..30901681464024.1228716-CDS-Ecto-sp13_S_contig7552:3027..3090Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7552 3028..3090 +
1681464024.1321368-CDS-Ecto-sp13_S_contig7552:3610..38231681464024.1321368-CDS-Ecto-sp13_S_contig7552:3610..3823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7552 3611..3823 +
1681464024.141099-CDS-Ecto-sp13_S_contig7552:4242..43891681464024.141099-CDS-Ecto-sp13_S_contig7552:4242..4389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7552 4243..4389 +
1681464024.149612-CDS-Ecto-sp13_S_contig7552:6474..66251681464024.149612-CDS-Ecto-sp13_S_contig7552:6474..6625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7552 6475..6625 +
1681464024.1580691-CDS-Ecto-sp13_S_contig7552:7402..74231681464024.1580691-CDS-Ecto-sp13_S_contig7552:7402..7423Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7552 7403..7423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7552.18746.1

>prot_Ecto-sp13_S_contig7552.18746.1 ID=prot_Ecto-sp13_S_contig7552.18746.1|Name=mRNA_Ecto-sp13_S_contig7552.18746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MSSTPPKTPPTTQEILDKSLKRALGGGFAGALAMGINVGTLMWMRTTINY
QLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVL
ALMESYDSTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTMMQVEGKKGF
PALVNKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSG
IKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQAHTEGVT
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mRNA from alignment at Ecto-sp13_S_contig7552:1738..7423+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7552.18746.1 ID=mRNA_Ecto-sp13_S_contig7552.18746.1|Name=mRNA_Ecto-sp13_S_contig7552.18746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5686bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7552:1738..7423+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAGCACACCGCCGAAAACACCGCCGACCACCCAGGAAATCCTGGA
TAAGTCCCTCAAGCGGGCTCTGGGGGGGGGCTTCGCGGGAGCGCTCGCGA
TGGGGATTAACGTCGGTACCTTGATGTAAGAGATGGGGGGGGGGAGGTGG
GGGTCACGGACGTTCCTGCTACTGCTCGCCTTTCGTGTCCCGTGCTGTGT
GTTGAAAGAGTTGCCCACACGGATGGAAAAAAGAACCACGGCTGCTTGTC
GGAGGGAGAGAGAGAATGAAAAAGAATGAGAAAGAGACAGGGGTGATAGG
GAGGGAGAGATAAGGAAATGGAAAGAAGGGGGGAGAGAGAGGGGGGAAGG
GGGCAGGATGAGGGCAGAGACACGACTGTAGGATAGGCGCAGAGGGCGTC
TGCGGGAAGCGTGTTTCCGCCAGCTTGGTTTCTCTCTCTTAGCTTTAAAT
GCAAAGAGGCAGGTGACATTTAGATGACGGAGGCGTTGTTACACAGTTGT
GCCTTGACACCGGCCGGTGCGGTGGGGTGTGTACTGGTACTGCCCGTGGT
GAGCGTACCGCGGGAAATGTTATGTGTAGCATCTCTGGCAGTAGGGTGGC
AACGGTGCCACGGTTTCTTTCTTTTTCCGTGACGCACAAGAGGAGTGCAG
CAGGAGTCCTGCTGTGCTCATCGTTTTTCCCGAGGCGTGTTTGAAGCTCA
ACAGCAGTAGTAGCTGCGTGCCCCTGCGCCCCTACCTGTCGCTGTTGGTC
TGCATGCGTGCGTTGGTCATGTCGGCTTATTCCTGGGCGTCGGGTTATCC
ACCTTGCGACATGTTGTGACGCACCAACCTCCGCAGTCACACGGCAGGAG
GAAGATTACGTGGGAGTTTGATGATTCTACGTTCTTCCACGTTCGTTCGG
TGATATGCTTGTCGGGGATTGTTTACCACGGGGAAGCCGTCTAGAGTGTG
TCCCACGTACCAGAAACACTGGAAAAGGCCTCAAGGGTGACAAGAGGGCT
GTAGGTCGGCACTAGTGTCGTAGCACAGCGAAAGCGTTCTTCCGTGCTCG
CAAGGTCGTATGCAGTACCTCGCTGTTTTTGCGGGGAAGCGCACGCAAAA
GAACCCGGTTCTAATTCCCTGTTCCACCCCCAGCGAAGTACCGACTTTTT
CCGAACTCTATTTTGTCTCCTCTTCTTCCCCGCCGCCGTAAATCCTCTCC
ACCACCGGCCCACGCCTTAACCCCACGACCCGGCCTCATCCCTTCCGCTC
GTCCCGGCTTCGCCGCGCGAAAACTGCTGTGGTGTTTCAGGTGGATGCGG
ACGACGATCAACTACCAGCTGCGGCACGGCGGTGGGACGATGGATGCCTT
CCGGTAAGTCGTTTGCCGCCTTCTCTTTTTCGTGCCTACATTTCTTCCTT
CCGCCGCGGACTGCCTATGCAAAGAGACATAATGTGTTTCGAAGAAAGAG
CAGGCAGGGGGTACGCAGACTTGAACCCCCCCTCCTTGCGAAAAATACGA
AAAACGTAACAATTGTCCATGGACTGCTCGTCATCTGCGGGAGGGGGTGT
TTTGGGTGTCGAAGCGATATTTTTTTGTCTTTGTTTTGAGTAATAGGCTT
TCCCCATGCACCACCCTGCGAAGCGCCAGGAGCGTACCCCCCCCCCCCCC
CCTGGTCCCTTGCCGATCATGGACGTGAGGGATAGAAAGCCGGAGACAGA
GAACCAGACATAGCCAGACAGAGGTGTATCCTGTTGCGAGACACATGGCG
TGTCGACGGAGACTGACATCAACTCACCTATCACCCTAGAATCTCGCCCA
CGCTCTCGCTTTCCCTACGATATCCCGCGATCGATTCGGCTTTGTCATCG
TCTCGTCTCCCCCCTCCCTTCAGCACTCTGTACAGCCAGGGGGGGATCGG
CAGATTCTACCGGGGGGTAGGGCCGGCGCTGATCCAGGGGCCGATGTCGC
GCTTTGGAGACACCGCGGCCAACACGGGGGTCTTGGCTTTGATGGAGTCT
TACGACTCGACCAAGAACCTGCCAGTGGGCGCGAAGACGCTCTGCGCCTC
GGTAGCCGCGGCGCTGTGGCGAATCTTCCTGATGCCGTGAGTTGTTGGGG
TTGAGGGTGTGCTAAATAGTAGCGGTGCAGGCCGTACTGTTCGTTAGACC
GTTGACCACCTCGCGTCTCTAGAAAGCCGGGATAGAGCACGCAGGGTTTT
CACCCGGACCAGGCTAGCACATCGCCAAGCGCGAAGCGCCGTGATAGGCA
TTCGGCGAGTCGCATGGAGGTTACTGGGGGGGGGGATTATTGTCCGTGTC
TTGGCCGGTGGTGCTGCCGCTGCTGTGGTCGTCGTGGCGGTGATGGGGTG
GTGTACTTTTCTTCTCCGGTCGAGTTTTTTTTTTTTGTGTTGCGTGATTT
TCTCCTCTTTCTGTTGAAGATACAATACCACGTCTCGTCACGAATCCTTT
TCTCTCTCCACGACGCACCCTTGTTGCAACAACATCTGCTACTTCTACCA
CTCAGGGTGGACACCACGAAGACGATGATGCAGGTGGAGGGCAAGAAAGG
GTTCCCGGCTCTCGTGAATAAGGTCAAGGTGGGCGGCCCCACGGTTCTGT
ACCACGGAGCCTTGGCGGCATCCTCGGCGACGTTGGTGGGGCACTACCCC
TGGTGAGAGGACGGAAACAACAGCAGCGGTACTGTAGCCCTCGCGAGGAT
GTTTCGTAGGATGGGTTGCGGGTGTGGGTTGGTGGGCAGGGTTAGGGTCA
CGAAACCCCCGTCTTCACTCCTCAAGAGGGCACGTGGATCCAAATACGTG
AAGCATACACACACGGTTTTCCTCTGTTGCTACCGTTCCTGTCTTTCCGG
GAAAAAGATTATTCTCCCCCATGCCGCCCCCTCACGGGGTCCCAGTTTAT
GGCATTTAGAAGTGTTTTGTGTTTTCAACCGCACTGAGACTGACGTCTTT
TCATTGGCCAGCCGGTTAGAGCTGTCTATGCCAATATTAAAAAAAACAAA
AACACACACACACCGTTTTGTTGGGCACCTTAATCCAGTGTTTTCAATGG
TTTCACGGTGTAGGACTTAGGTAACATTGTTTAAAAGTCTATGTTTTCCA
TACCGTATATGACCCACAATATAGATGAAACCAGTCAGTTCAGAGAGAGG
TGTATCAGCGTCGTGAAAACACCAGGGCGAGGGGTGGTACAGAGGACAGC
CCGCTCCAGTAGCTCGGTACACAGCGAGACATACGCCCACTCCCCACTGC
TGTACTCCACGACAACCAGGCCTGGGGTATTGGTGTTATTGGTTTTGGAC
CCTACTATATATTAATCATACCATCTGGTGGGGTATATATTTCAGGAATA
TCCCGACCACCTGCCCACATTCCTAGTATTCCGACTTAAGGCAGGTAGCA
GTACAATGTTTACTAGCATAAGCAAGCGATGCGCAAGCGTTCCCCCTTGC
TCAGTGTTGCCTGGGAATGAGCGACAGCGAGCGACTGGAGAGGGAAAGGA
AAGATGAGGAAGGAATCGGAATGAAGAAGCGAAGCGGCGCCAACCCGCAC
ACACTGGTCGGACAACTGCAGCTCCACACCTGTCATCTCGTCACACTTGC
CGCCGTCGGCGGGAGTGTGTCGTTTTGATCGTGGCCTGGGTGGTTAGACC
TTCAGCTTGTGCTTGCGCAGCCGTTGCAAGGAGGCGCGCAAGGTGCGGAC
GTGATCCGCCAGTGTCTTGTCGTAGAGTACAAGGTCGTCATGGATACGCG
CGTAAGTCAAAGCTGGACTGTGGACTCCGACCGACAGCGTCGCAGGTCCA
CCACTGACACCGTTCCCGTCGCCAACACCTTGTCAGCTTTGGCTCACTTG
CGTATCCAAGAGCTTTGGCTCACGTGCGTATCCAAGACGACCTTGTACTC
TACGACAAGACGTCGGCGGGTCACGTCCGCACCTTGCGCGCCTTCTTGCA
TCGGCTGCGCACGCACAAGCTCTTGCCATCACCGCCCAAGGCCACCATCA
AAACGACACACTCTGCATTCTTTGGACACACGATAACTCCCGACGGCATC
AGGCCGTTCGTCGACAAAGTCGCCACAGTTGTGGTCATGCCAATGCCAAC
CGACATCGAAAGACTCATTGGTGTGTTGGGTACGTTGGATGGATTATTGG
GCAGGGTGATGGGGTTGGTTATAGGAGTATGGAGGCTTCGCTACACCGCA
CCATAAACCCAGTCTAAAAGTAAGAGGTGTGTAGGTTTGCAATAGCCATT
TTCAACTCCTATGTCTTCAACATAAAACATGTAGGAAATACTGTACCACA
CTAGATCCTACGTACATCTATCTTACGGTATAGAACAACCCCTTTCCCTG
ATCTGGCCCTTGGTCCAGTTTTGGGGTGTGCTTCACGTGTCCGACCGGAA
CGAAGGTCGAGGGCATATCGTCGCATCATGGCGCCGCGAGATTGTCCTCG
ACCTCACATATTTTCAGAAAATCTACGTAAAAAGCCTACCCGTTGGAGAT
ATTACCACAGCAGTCGAAAGGGATGTGCTGAAGTCTTTACAGTGATTGGA
GGGAAACCGGCTGAATGCTGTTGTAGCACGGATCATGGGGCTCTCAGACA
CCCCACCTACCCGCCCGGTTACACGAATCGACTTGAATAGCAGCCATTTT
CCTCGTTTCGCCGCTGTTTCTTTCTGTGGGTGGGGCCGGAAAAAACGAAA
ATCACAAAAAAAAATGGGGGTGGACGTCGGCTGCCAGGTTCTTCACGTAC
AACTACCTCCAGGAGCGCATCCCAAAGCAAGACTCGGGCATCAAGAAGCT
CGCACGGAACGGCATCATCGGCTTCTGCTCGTCGGTGGTGTCCGACACGT
GCTCCAACTCAATCCGCGTCGTCAAGGTCTACAAGCAGGTACGTGATGAG
AGTACATCGCCGGCCGACTGTCGTGAACGTGATACTTCAGTAAATCCCAC
CTGTCCGTGCGTAATTTGCACGTGAGCTTGTTGTTCTCATTTTTTTGGGG
CCATAAAGCGTTATGAAGAGGGGTCGATATATGGCCGCCTAGACTGGTTA
TCGTAGCCGTAGTTTTGGTTCCCAGCTTCAGGGCTGACCGGCCAGTTGGC
TGACCCGCTCTAGTGGCACGCTACCGTCTTGCAGCATGTCTGCCGCCGCC
CCCTCTCCGGTCCTGCCTGGACCAGACCGGCTTTGTCAAAAATTGAGGGA
GCTTTTTTGTAACAAAATTGGGGCGTTTTTTGTCCGCGGCGGGTGGTTAT
GTAGCGTTGATGAAGCGGGACAAGAATCGACGCTGTCGAGCTGTTTGTTG
TGTACGCGTGCCTGGAACCACCGCTCTCTTGCGCTCACCCTCCTCCTTGA
CTCCTTCTCTTCCCTCCCCGATCTCTCCGGCGAACTTGCCCTGCACCCAA
CAACAACGGCACCCGAAAACGCCATCCCCATCATCAACACCTGCGGTGAC
GATGATGACGACGACGACCACGATCACAACGGTGGCATTGACGATGACGA
TGGCTGCAACACGACGGCTACGACAACGGCGAAAACGATGATAATAACAA
CAACAACAACAACAACAACAACAACAACAACAATAACAACGCCAAATGAC
GACGACGACGACGACGACGACGACGACGACGACGACGACGACGACGACGA
CGACGACGACGAAAGGCTCACACGGAGGGAGTGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7552:1738..7423+

>mRNA_Ecto-sp13_S_contig7552.18746.1 ID=mRNA_Ecto-sp13_S_contig7552.18746.1|Name=mRNA_Ecto-sp13_S_contig7552.18746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7552:1738..7423+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAGCACACCGCCGAAAACACCGCCGACCACCCAGGAAATCCTGGA
TAAGTCCCTCAAGCGGGCTCTGGGGGGGGGCTTCGCGGGAGCGCTCGCGA
TGGGGATTAACGTCGGTACCTTGATGTGGATGCGGACGACGATCAACTAC
CAGCTGCGGCACGGCGGTGGGACGATGGATGCCTTCCGCACTCTGTACAG
CCAGGGGGGGATCGGCAGATTCTACCGGGGGGTAGGGCCGGCGCTGATCC
AGGGGCCGATGTCGCGCTTTGGAGACACCGCGGCCAACACGGGGGTCTTG
GCTTTGATGGAGTCTTACGACTCGACCAAGAACCTGCCAGTGGGCGCGAA
GACGCTCTGCGCCTCGGTAGCCGCGGCGCTGTGGCGAATCTTCCTGATGC
CGGTGGACACCACGAAGACGATGATGCAGGTGGAGGGCAAGAAAGGGTTC
CCGGCTCTCGTGAATAAGGTCAAGGTGGGCGGCCCCACGGTTCTGTACCA
CGGAGCCTTGGCGGCATCCTCGGCGACGTTGGTGGGGCACTACCCCTGGT
TCTTCACGTACAACTACCTCCAGGAGCGCATCCCAAAGCAAGACTCGGGC
ATCAAGAAGCTCGCACGGAACGGCATCATCGGCTTCTGCTCGTCGGTGGT
GTCCGACACGTGCTCCAACTCAATCCGCGTCGTCAAGGTCTACAAGCAGG
CTCACACGGAGGGAGTGACG
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