mRNA_Ecto-sp13_S_contig7551.18743.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7551.18743.1
Unique NamemRNA_Ecto-sp13_S_contig7551.18743.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: D8LC05_ECTSI (Actin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC05_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.420e-51
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 1
Query:    4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYNVR 282
            +LIFNPDAGGKDFAARATDGGLASMVM+SISMCDKDINPDLLGSVVVAGGTTMM GFVERLQ+DLDRVSPPGA MMASVIPHPTSHEPGYN +
Sbjct:  261 ELIFNPDAGGKDFAARATDGGLASMVMQSISMCDKDINPDLLGSVVVAGGTTMMAGFVERLQDDLDRVSPPGAPMMASVIPHPTSHEPGYNAQ 353          
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: A0A7S2BD76_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BD76_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.610e-17
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   64 GLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYN 276
            GL ++V ++ISMCD+D+ PDLL SVV+AGGTTM+PGF ERL+ +L R+S PG S   +V+P     E GYN
Sbjct:    7 GLPALVQKAISMCDRDLQPDLLQSVVLAGGTTMLPGFSERLKHELVRISAPGTSF--NVVPDNKGSERGYN 75          
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: A0A662X996_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X996_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.560e-15
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYN 276
            +++F P   G D  +R T G L      SI+MCDKD+  DL G+VV+AGG+TM+PGF  R QE+L  V+    S   +V+P P   E GYN
Sbjct:  242 EVLFKPQELGDDHPSRPTQG-LHECAAASIAMCDKDLQKDLFGAVVLAGGSTMLPGFSRRFQEELQAVTQRPGSGSVNVVPDPVVRERGYN 331          
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: A0A7S2S4R5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4R5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.310e-14
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   46 ARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYN 276
            A   D GLA++V +SI MCDKD+ PDL  SVV++GG+TM PGF ERL+ DL+ V  PG     SV+P     E GY+
Sbjct:  264 AAQPDNGLAALVQKSILMCDKDLQPDLFNSVVLSGGSTMFPGFSERLRRDLESVVMPGTEF--SVVPDSRQAERGYS 338          
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: A0A3R7H0W0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H0W0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.360e-13
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRV-SPPGASMMASVIPHPTSHEPGYN 276
            +++F P   G +   R  + GL      SI+MCDKD+  DLL +VV+AGGTTM+PGF +R Q++L+ V    G+S  A+VIP P   E GYN
Sbjct:  308 EVLFKPQELGDEHPLRP-EKGLHECAAASIAMCDKDLQSDLLNAVVLAGGTTMLPGFSKRFQDELNAVLQHTGSSNTANVIPDPVVRERGYN 398          
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: D0MWD8_PHYIT (Actin-like protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0MWD8_PHYIT)

HSP 1 Score: 75.9 bits (185), Expect = 4.370e-13
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYN 276
            +++F P   G D   R  D GL   V  S++MCDKD+  DLL +VV+AGGTTM+PG   R QE+L  V P  A    +V+P P   E GYN
Sbjct:  279 EILFKPHELGDDHPLRP-DKGLHECVAASLAMCDKDLQSDLLNAVVLAGGTTMLPGTSRRFQEELQSVLPGSA---LNVVPDPIIRERGYN 365          
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: A0A2P4YL38_9STRA (Actin-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YL38_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.750e-13
Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRV-SPPGASMMASVIPHPTSHEPGYN 276
            +++F P   G D      D GL   V  SI+MCDKD+  DLL +VV+AGGTTM+PGF  R +++L  V    G S   +VIP P   E GYN
Sbjct:  175 EVLFKPQELG-DEHPMCPDKGLHECVAASIAMCDKDLQSDLLNAVVLAGGTTMLPGFSRRFRDELQSVLQRSGGSSTVNVIPDPVVRERGYN 265          
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: H3G988_PHYRM (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=H3G988_PHYRM)

HSP 1 Score: 72.4 bits (176), Expect = 7.050e-12
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDR-VSPPGASMMASVIPHPTSHEPGYN 276
            +++F P   G +      D GL      SI+MCDKD+  DLL +VV+AGGTTM+PGF +R Q++L   +   G +   +VIP P   E GYN
Sbjct:  263 EILFKPQELGDEHPMHP-DKGLHECAAASIAMCDKDLQSDLLSAVVLAGGTTMLPGFSQRFQDELQAALQRTGGNGNVNVIPDPVVRERGYN 353          
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: K3WHZ1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHZ1_GLOUD)

HSP 1 Score: 71.2 bits (173), Expect = 1.900e-11
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   49 RATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMA-SVIPHPTSHEPGYNVR 282
            ++T  GL   V  SI+MCDKD+  DL  +VV+AGGTTM+PGF +R QE++      GA+     ++P P   E GYN +
Sbjct:  304 QSTTKGLHEYVAESIAMCDKDLQKDLCAAVVLAGGTTMLPGFSKRFQEEIQMTKSLGAATRTMGIVPDPYVRERGYNAQ 382          
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: A0A8K1FBD4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBD4_PYTOL)

HSP 1 Score: 69.7 bits (169), Expect = 6.420e-11
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYN 276
            +++F P   G++   + T G L  +V  SISMCDKD+  DL  +V++AGGTTMMPGF +R QE+L  ++         V+P     E GYN
Sbjct:  280 EILFKPQDLGEEHPMKPTKG-LHELVAESISMCDKDLQKDLYDAVILAGGTTMMPGFSKRFQEELMMLT---KKPRLCVVPDAHVRERGYN 366          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC05_ECTSI1.420e-5192.47Actin n=1 Tax=Ectocarpus siliculosus TaxID=2880 Re... [more]
A0A7S2BD76_9STRA2.610e-1756.34Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A662X996_9STRA8.560e-1545.05Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A7S2S4R5_9STRA2.310e-1451.95Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3R7H0W0_9STRA1.360e-1345.65Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
D0MWD8_PHYIT4.370e-1346.15Actin-like protein n=13 Tax=Phytophthora TaxID=478... [more]
A0A2P4YL38_9STRA4.750e-1345.65Actin-like protein n=1 Tax=Phytophthora palmivora ... [more]
H3G988_PHYRM7.050e-1242.39Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
K3WHZ1_GLOUD1.900e-1144.30Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1FBD4_PYTOL6.420e-1141.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7551contigEcto-sp13_S_contig7551:1046..2275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score178.7
Seed ortholog evalue2.2e-42
Seed eggNOG ortholog2880.D8LC05
Model size493
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0676@2759
Ec32 ortholog descriptionActin family
Ec32 orthologEc-20_003970.1
Cds size492
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.9560244-CDS-Ecto-sp13_S_contig7551:1045..11531681464023.9560244-CDS-Ecto-sp13_S_contig7551:1045..1153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7551 1046..1153 +
1681464023.9726982-CDS-Ecto-sp13_S_contig7551:1544..17121681464023.9726982-CDS-Ecto-sp13_S_contig7551:1544..1712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7551 1545..1712 +
1681464024.001464-CDS-Ecto-sp13_S_contig7551:1743..17781681464024.001464-CDS-Ecto-sp13_S_contig7551:1743..1778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7551 1744..1778 +
1681464024.0117779-CDS-Ecto-sp13_S_contig7551:2094..22751681464024.0117779-CDS-Ecto-sp13_S_contig7551:2094..2275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7551 2095..2275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7551.18743.1prot_Ecto-sp13_S_contig7551.18743.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7551 1046..2275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7551.18743.1

>prot_Ecto-sp13_S_contig7551.18743.1 ID=prot_Ecto-sp13_S_contig7551.18743.1|Name=mRNA_Ecto-sp13_S_contig7551.18743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
MQLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAG
GTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYNVRCLRRCH
RSSSYKSPGKSTKTAGRASSIEFSCERLFFFIPWPAKVSPLAAGGAWAVD
LVVFSVKWRDAPCS
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mRNA from alignment at Ecto-sp13_S_contig7551:1046..2275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7551.18743.1 ID=mRNA_Ecto-sp13_S_contig7551.18743.1|Name=mRNA_Ecto-sp13_S_contig7551.18743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1230bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7551:1046..2275+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCTGATTTTTAACCCTGACGCTGGGGGCAAGGACTTCGCGGCACG GGCAACAGACGGCGGTCTTGCGAGCATGGTCATGCGAAGCATCTCCATGT GTGACAAGGTGTGGGACGAGTTCTTCTCGAAGTACAATCGGGAAACTAAG GCTCTCCATATACAGTAGATAGATAGATGGGCGACTTTTCGAAAGACGGG TTATTTCCTTGCCCGCAGCTGCACCCTCGTCGGGCGTACTGTAAGCGGGT AAAGCACAGCTACTGCTGTAATAGGAATTATTTCACTTCCATCAACAATG TGCATGCACCTGCCGTACGAGTCACGCTCCTCGACGAAGCACGGTGGTGA GCCTGTTATGGGATTCGAGTACGAGGATCTGAACGGTACTACTTCCAGGC AAGGCATTCAGGTTAGTTATGGCGGGAGCTTTCATGCTTTAGGTATTGTT ATCAAAGAGCGGATACCATAACGGCCCCTCCCAACCAACACCTCCTCAGG ACATCAATCCTGACCTCCTGGGTTCCGTTGTGGTTGCGGGAGGAACGACG ATGATGCCGGGGTTCGTAGAGCGTCTTCAAGAGGATCTGGACAGGGTCTC TCCGCCGGGGGCATCCATGATGGCGAGCGTCATACCCCACCCTACGAGCC ACGAGCCCGGCTACAACGCGCAGAGAAAGCACGCGCCGTGGATAGGAGGT TCGATGCTTGCGTCGCTGTCACCGTTCAAGCAGGTGCATGTCGGCAATAT GACGAATGGATAATTGTGGGCATGCGTGAAAGATAGTCAGTGTTCTTGGA ACCACTGAGCAACAGGGCTACAATGGCAGAGGTTTTCACTTAACTACAAC TTTGGGGTGTGCAACTCTGCCTCGCTGCTAGCTTTGAGTAGTAAATCCAG TGAACATGTTCCTCCTGATTTTGCTCCCCCCTCTGCGCCGTTGCGCGTCT CCTTGCCCCGCTGTTGTACCCTGAACGTTGCCGGCACTACCCTTGCCCAA ACTGGCGTCCCGGACGGATCGAAACGGACCCTGTCTCCGCTGATGGCAGC TACAAGTCACCCGGCAAGAGTACGAAGACAGCGGGGAGAGCATCATCCAT CGAATTTTCTTGTGAACGGCTCTTCTTTTTTATTCCCTGGCCTGCTAAAG TATCTCCACTTGCCGCCGGCGGGGCGTGGGCAGTCGACTTGGTTGTTTTT TCTGTCAAGTGGCGAGATGCACCGTGTAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7551:1046..2275+

>mRNA_Ecto-sp13_S_contig7551.18743.1 ID=mRNA_Ecto-sp13_S_contig7551.18743.1|Name=mRNA_Ecto-sp13_S_contig7551.18743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7551:1046..2275+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCTGATTTTTAACCCTGACGCTGGGGGCAAGGACTTCGCGGCACG
GGCAACAGACGGCGGTCTTGCGAGCATGGTCATGCGAAGCATCTCCATGT
GTGACAAGGACATCAATCCTGACCTCCTGGGTTCCGTTGTGGTTGCGGGA
GGAACGACGATGATGCCGGGGTTCGTAGAGCGTCTTCAAGAGGATCTGGA
CAGGGTCTCTCCGCCGGGGGCATCCATGATGGCGAGCGTCATACCCCACC
CTACGAGCCACGAGCCCGGCTACAACGTTCGATGCTTGCGTCGCTGTCAC
CGTTCAAGCAGCTACAAGTCACCCGGCAAGAGTACGAAGACAGCGGGGAG
AGCATCATCCATCGAATTTTCTTGTGAACGGCTCTTCTTTTTTATTCCCT
GGCCTGCTAAAGTATCTCCACTTGCCGCCGGCGGGGCGTGGGCAGTCGAC
TTGGTTGTTTTTTCTGTCAAGTGGCGAGATGCACCGTGTAGT
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