mRNA_Ecto-sp13_S_contig7543.18732.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7543.18732.1
Unique NamemRNA_Ecto-sp13_S_contig7543.18732.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7543.18732.1 vs. uniprot
Match: A0A6H5L4V6_9PHAE (Clu domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.010e-19
Identity = 103/110 (93.64%), Postives = 104/110 (94.55%), Query Frame = 1 
Query:  124 MAETYPEIPAILRPTDRSPPPDFFPVSPGTAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRVRKMXXXXXXXXXXXXAAGEVRSGRLETLGWVSASWEPR 453
            MAETYPEIPAILRPTDRSPPPDFFPVSPGTAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXX+AGEVRSGRLETLGWVSASWEPR
Sbjct:    1 MAETYPEIPAILRPTDRSPPPDFFPVSPGTAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGEVRSGRLETLGWVSASWEPR 110
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BLAST of mRNA_Ecto-sp13_S_contig7543.18732.1 vs. uniprot
Match: D8LS90_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS90_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.230e-9
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:  124 MAETYPEIPAILRPTDRSPPPDFFPVSPGTAKA 222
            MAETYPEIPAILRPTDRSPPPDFFPVSP TAKA
Sbjct:    1 MAETYPEIPAILRPTDRSPPPDFFPVSPRTAKA 33
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7543.18732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4V6_9PHAE1.010e-1993.64Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LS90_ECTSI1.230e-996.97eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7543contigEcto-sp13_S_contig7543:3811..6515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score68.9
Seed ortholog evalue2.2e-09
Seed eggNOG ortholog2880.D8LS90
Model size457
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Regulator of chromosome condensation (RCC1) repeat
EggNOG OGs2S0QB@2759,COG5184@1
Cds size453
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464022.8829327-CDS-Ecto-sp13_S_contig7543:3810..38981681464022.8829327-CDS-Ecto-sp13_S_contig7543:3810..3898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7543 3811..3898 +
1681464022.910061-CDS-Ecto-sp13_S_contig7543:6148..65131681464022.910061-CDS-Ecto-sp13_S_contig7543:6148..6513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7543 6149..6513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7543.18732.1prot_Ecto-sp13_S_contig7543.18732.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7543 3811..6513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7543.18732.1

>prot_Ecto-sp13_S_contig7543.18732.1 ID=prot_Ecto-sp13_S_contig7543.18732.1|Name=mRNA_Ecto-sp13_S_contig7543.18732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
FFIPAGSPGIVAVLSPVKGSSVFRDSCTSAPALSKKDGEEDMAETYPEIP
AILRPTDRSPPPDFFPVSPGTAKAKAASKAAAAAAAGGVPRTQQSRSRSR
SGDDEDREEYIRVRKMVEEEDDDEDDEDAAGEVRSGRLETLGWVSASWEP
R
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mRNA from alignment at Ecto-sp13_S_contig7543:3811..6515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7543.18732.1 ID=mRNA_Ecto-sp13_S_contig7543.18732.1|Name=mRNA_Ecto-sp13_S_contig7543.18732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7543:3811..6515+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTCATCCCTGCCGGCTCGCCAGGGATTGTCGCGGTGCTCTCGCCTGT
GAAGGGGTCATCCGTATTTCGTGACAGCTGCACTTCTGGTGAGCACGGCG
GGTATGTACACATCTGTGGAGCAGCAGATCGACGACCCTGCGGTTGTCCC
CGCAGGATGGAAAGCGTACCTGCTGTTTCTTGAGGTGCAGTGTGTGTGTT
GCAGGCCATGTGGGTCAGGCACATCTACCTTACACCGAACAACAGAGCCG
TTTCGTGTGGTCAGTGCCCTTGGAAGCGCCAGAGAGGGATGCTTCGTGAG
GTTCTCTCTTCCGCGAAGGGTCGACATCATCCATCGCGCTGCTGTGTACG
GCTCCTTTTTTTCGTTCCGGGGCGACATGCATCATGTATCCGTTTGGCTT
CGTTTTTCTCGTTTGTCCCTCCGCTCACGCTACTCCTCCACGATCACGGC
TCCTCGAGCACACGCCCCACCCCGTGCGGAGATGCTTTACATCACCAGTT
CCGTGTCGGTGGTATGTGCCCCATTCAAATGCCTGTCGTCGCTGGGACAA
CGCCGAGGATATGTTCCGAAAATCAATCAAAAAGTCACACACACACGGCG
ATGAATTAGTTGCCACAGAGCAGCTCCAACAACCACCGGCGGATGCACAA
TCAGCAGTCAGCAGCTTTTCGTGCCTGGGCCTAGTGGTCCCGTCCCTTCC
GCATGGCTGTGGGGTTTTATGTCGTCGACTTCTGTCCCTTTCTAGTGCAG
TCACTCAGGTCTCACACAGCCAGTGCTTGGCAATCTTTTTAAGTCTGTTG
AGTATTTGTTCGTGAGCGGCACCCACATGAGTTTTGAATATCGCATCTTG
GTAACATCTTCGGTTTGCAACTTGCCAACATACAGGCAGAGCACACCCAG
CACATACGTAACGGCTGTTTTTTTTGGCATGAAAGCTCCTCTTCGTCCTC
CTACACACCCTTGCGAGCTAACTGCAGTCTGAGTCGTTCCCGTTTGTTCT
AAACGTCTAACACGCATAAACACCTGTGTTTCCGTTTTCCAAATCATAAA
TGAGTTGCGTACGCGAAAGATGGGAAACAGAATCACAAGTAACAGCCAGG
CGACCTTCGTATCCGCACGGGCCTGTACCATTGGAGTTGCTGGCAGAAAC
GGCAATGTGACATTGGCCGGGATCGCTGAACACCGCAGTGAATGGGGGTG
CCTGTTGCTACTGTGCGTGTGCGGGGATGCTGAAATTGTTTTCATGCCGT
CTTGGAGATGCACCTTTGGCATGGCATAGCGGGGTACCGAAGGGGCACTC
GCACGAAAGGCAAGACTGGAAGGGCGGCCAGCGTGGTTTCGTTGCGCCGA
GCGTGGTTCAATTGTTCAACACTCATTATAAACAGCAAGTATCATTCTCG
TATGCGTAAACGATCTTTTTTTGTGGCGAAACATTACTGCTGTGTCAATG
CGATGTGACGTCGAACCGGACTCCCGCACGGTTACATAGCGTGCAGTGGG
ATAGTGGGTTGCAGTCCAGGGCAACTACTTCGAAGTGTTCCCCCCGACCC
ACGGCAGAAAGCATACGGATTATCACCTGCGTTGCACCTTTTAGAAAAGA
CTTTCGTGTTCAAACCTTCTTTTGTTGACGCATCGCGAAGAGTGCACCAC
CATGTTGCCATGATTAAACGAAAATGCAACTAAGGCAGACTCATTGCAGT
TCGTCAGTTTTGTATCCCTTCCATTTCCACAAGGGGGCAAGACTCCTCCT
TCATTAGTGATGAAAAAGTTACGATGCTCACCTCGGCCCACCGCCGCCAC
CTTCTCTCTCCTCTTCCCTATAAGAAACATCACCACCACACTCTACGTTG
GCGAGGAGACCCTTCTCTATTGCCTTCACCATTCAAGACTTTTTTGGCAC
CGTGCCAGGAAGCAGCAGCAATAACAGTACTCATTAAGAATTTGAATAGA
GTGGGTGCCAGGAGTGGACAGCATGTAATGCGTTTATGGCTGATTGTTAA
ACAGATTATGCACGCATGGAAGCTCTGGGCGGGAGCTGTGGGGGGTTGCT
CCGCATTTCGGGGACGTATTTTGTGTGAGTTTGAATTATCGAGCAGCACT
CCAGGTAATGCGTCACTGAATGGCTCGCTGACTCGCTCGCTGGCTCGATG
GCTGTCGTGTCAACGCAATAAGAACAACGGTTGAAGGTCTCGAGGTTTGA
TCCACGAGAGCGAAGACGTCCGTTGGTCGCGTGCTCTCGCATTGCGTTGC
AACAACGGACCGAACTTTTCGAACCCCGGCCCCTCGACCGCATATTGCAC
GCGCGGACCCGATTTTCGTTCTCATGTCTCGCCTTCAGCTCCGGCTTTGT
CGAAGAAGGACGGCGAAGAAGACATGGCGGAGACGTACCCGGAGATCCCC
GCGATCCTGAGACCCACCGACAGAAGCCCGCCGCCGGACTTCTTTCCAGT
GTCGCCGGGCACCGCCAAGGCCAAGGCGGCGAGCAAGGCGGCGGCGGCCG
CCGCCGCCGGCGGCGTCCCCCGGACACAGCAGTCGAGGAGCAGGAGCAGG
AGCGGCGATGACGAAGACCGGGAGGAGTACATCAGAGTCCGAAAGATGGT
GGAGGAGGAGGACGACGACGAGGACGACGAGGACGCCGCGGGGGAGGTAA
GGTCCGGCCGCCTCGAGACGCTCGGCTGGGTGTCGGCCTCGTGGGAGCCC
CGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7543:3811..6515+

>mRNA_Ecto-sp13_S_contig7543.18732.1 ID=mRNA_Ecto-sp13_S_contig7543.18732.1|Name=mRNA_Ecto-sp13_S_contig7543.18732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7543:3811..6515+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTCATCCCTGCCGGCTCGCCAGGGATTGTCGCGGTGCTCTCGCCTGT
GAAGGGGTCATCCGTATTTCGTGACAGCTGCACTTCTGCTCCGGCTTTGT
CGAAGAAGGACGGCGAAGAAGACATGGCGGAGACGTACCCGGAGATCCCC
GCGATCCTGAGACCCACCGACAGAAGCCCGCCGCCGGACTTCTTTCCAGT
GTCGCCGGGCACCGCCAAGGCCAAGGCGGCGAGCAAGGCGGCGGCGGCCG
CCGCCGCCGGCGGCGTCCCCCGGACACAGCAGTCGAGGAGCAGGAGCAGG
AGCGGCGATGACGAAGACCGGGAGGAGTACATCAGAGTCCGAAAGATGGT
GGAGGAGGAGGACGACGACGAGGACGACGAGGACGCCGCGGGGGAGGTAA
GGTCCGGCCGCCTCGAGACGCTCGGCTGGGTGTCGGCCTCGTGGGAGCCC
CGC
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