mRNA_Ecto-sp13_S_contig7528.18714.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7528.18714.1 vs. uniprot
Match: D8LSH2_ECTSI (Lissencephaly protein 1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH2_ECTSI) HSP 1 Score: 131 bits (329), Expect = 1.290e-30 Identity = 90/95 (94.74%), Postives = 90/95 (94.74%), Query Frame = 1
Query: 94 MRTDRDSPQLSTASTSRSTTAXXXXXXXXXXXXXXXXS-SIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALRLK 375
MRTDR SPQLSTASTSRST XXXXXXXXXXXXXXXX SIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALRLK
Sbjct: 1 MRTDRSSPQLSTASTSRSTXXXXXXXXXXXXXXXXXXXXSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALRLK 95
BLAST of mRNA_Ecto-sp13_S_contig7528.18714.1 vs. uniprot
Match: A0A3L6VRZ9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VRZ9_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 1.770e-9 Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 205 SSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 369
S FP+DP L+RTFRG + V +SY+P+M+QL S + D +M+W F+ Q+RA R
Sbjct: 29 SDCFPMDPSLQRTFRGHKSGVECLSYNPNMRQLASGSLDCTVMIWNFKPQMRAFR 83
BLAST of mRNA_Ecto-sp13_S_contig7528.18714.1 vs. uniprot
Match: A0A3R6XQU3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XQU3_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 2.470e-8 Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 205 SSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 369
S FP+DP L+RTFRG + V +SYSP+M+QL S + D +M+W F+ Q+RA R
Sbjct: 29 SDCFPMDPSLQRTFRGHKSGVECLSYSPNMRQLASGSLDCTVMIWNFKPQMRAFR 83
BLAST of mRNA_Ecto-sp13_S_contig7528.18714.1 vs. uniprot
Match: A0A3S0ZAS1_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZAS1_ELYCH) HSP 1 Score: 65.5 bits (158), Expect = 2.580e-8 Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 223 DPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 369
DP LER FRG VT V +SP+M QL SS+ DNNLMVW F+A++RA R
Sbjct: 6 DPSLERHFRGHRDVVTAVDFSPNMTQLASSSLDNNLMVWNFKAKMRAYR 54
BLAST of mRNA_Ecto-sp13_S_contig7528.18714.1 vs. uniprot
Match: R1F002_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F002_EMIHU) HSP 1 Score: 64.7 bits (156), Expect = 3.140e-8 Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1
Query: 217 PVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 369
P+DP LER+FRG V+ VS+SP MKQLVS D +MVW F+ Q+RA R
Sbjct: 6 PMDPALERSFRGHKDGVSSVSFSPTMKQLVSGGLDGTVMVWNFKMQMRAFR 56
BLAST of mRNA_Ecto-sp13_S_contig7528.18714.1 vs. uniprot
Match: A0A2C9JD71_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JD71_BIOGL) HSP 1 Score: 64.3 bits (155), Expect = 6.080e-8 Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 223 DPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 369
DP LER FRG VT V ++P+M QL SS+ DNNLMVW F+A++RA R
Sbjct: 6 DPSLERHFRGHRDVVTSVDFNPNMTQLASSSLDNNLMVWNFKAKMRAYR 54
BLAST of mRNA_Ecto-sp13_S_contig7528.18714.1 vs. uniprot
Match: UPI000359547A (POC1 centriolar protein homolog A isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI000359547A) HSP 1 Score: 64.3 bits (155), Expect = 6.130e-8 Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 223 DPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 369
DP LER FRG VT V ++P+M QL SS+ DNNLMVW F+A++RA R
Sbjct: 6 DPSLERHFRGHRDVVTAVDFNPNMTQLASSSLDNNLMVWNFKAKMRAYR 54
BLAST of mRNA_Ecto-sp13_S_contig7528.18714.1 vs. uniprot
Match: A0A418F511_9STRA (Macro domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F511_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 7.660e-8 Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 205 SSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 369
S FP+DP L+RTFRG + V +SY+P+M+QL S + D +M+W F+ Q+RA R
Sbjct: 29 SDCFPMDPSLQRTFRGHKSGVECLSYNPNMRQLASGSLDCTVMIWNFKPQMRAFR 83
BLAST of mRNA_Ecto-sp13_S_contig7528.18714.1 vs. uniprot
Match: A0A0B7BTT4_9EUPU (Uncharacterized protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BTT4_9EUPU) HSP 1 Score: 62.8 bits (151), Expect = 1.970e-7 Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 223 DPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 369
DP LER FRG VT V +SP+M QL SS+ D+NLMVW F+A++RA R
Sbjct: 6 DPYLERHFRGHQDVVTSVDFSPNMTQLASSSLDHNLMVWNFKAKMRAYR 54
BLAST of mRNA_Ecto-sp13_S_contig7528.18714.1 vs. uniprot
Match: A0A2G8LCQ3_STIJA (Putative POC1 centriolar protein-like A isoform X2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LCQ3_STIJA) HSP 1 Score: 61.6 bits (148), Expect = 4.820e-7 Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 211 IFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 369
+ P DP LER ++G VT V ++P+MKQL S D+ LMVW F+AQ+RA R
Sbjct: 39 LVPEDPTLERNYKGHRDTVTSVDFNPNMKQLASGGMDSCLMVWNFKAQMRAFR 91 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7528.18714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7528.18714.1 >prot_Ecto-sp13_S_contig7528.18714.1 ID=prot_Ecto-sp13_S_contig7528.18714.1|Name=mRNA_Ecto-sp13_S_contig7528.18714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=298bp MTSRSSNFGGGSSSGRLARGGHRRFSGLDQTMRTDRDSPQLSTASTSRSTback to top mRNA from alignment at Ecto-sp13_S_contig7528:1..4585- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7528.18714.1 ID=mRNA_Ecto-sp13_S_contig7528.18714.1|Name=mRNA_Ecto-sp13_S_contig7528.18714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7528:1..4585- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7528:1..4585- >mRNA_Ecto-sp13_S_contig7528.18714.1 ID=mRNA_Ecto-sp13_S_contig7528.18714.1|Name=mRNA_Ecto-sp13_S_contig7528.18714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7528:1..4585- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |