mRNA_Ecto-sp13_S_contig7511.18700.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7511.18700.1
Unique NamemRNA_Ecto-sp13_S_contig7511.18700.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7511.18700.1 vs. uniprot
Match: D7FTT1_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTT1_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.970e-51
Identity = 108/113 (95.58%), Postives = 110/113 (97.35%), Query Frame = 3 
Query:    3 STTGLLSPGHRQLSEKVMAEIDQEVQTLLAQQYQRALALIRTHRDKIGSLSAALLEHNVVHKADLRRILGDKVTVESEEAAAAAALTEGLLNVDGEKAENASTSGAGTAPTEA 341
            STTGLLSPGHRQLSEKVM EIDQEVQTLLAQQYQRALALIRTHRDKI SLSAALLEHNVVHKADLRRILGDKVTVE+EEAAAAAALTEGLL+VDGEKAE ASTSGAGTAPTEA
Sbjct:  839 STTGLLSPGHRQLSEKVMGEIDQEVQTLLAQQYQRALALIRTHRDKIDSLSAALLEHNVVHKADLRRILGDKVTVETEEAAAAAALTEGLLDVDGEKAETASTSGAGTAPTEA 951
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BLAST of mRNA_Ecto-sp13_S_contig7511.18700.1 vs. uniprot
Match: A0A836CBI2_9STRA (Peptidase_M41 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.050e-8
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 3 
Query:    3 STTGLLSPGH-RQLSEKVMAEIDQEVQTLLAQQYQRALALIRTHRDKIGSLSAALLEHNVVHKADLRRILGDKVTVESEEAAAAAA 257
            S+ GL +P     LSE    +I+QE+QT+L +QY+RA AL+  + + + +L   LLE  VVH+A L+ +LG+K T +    + AAA
Sbjct:    9 SSIGLFAPSDWSALSELTSQKIEQEIQTILEEQYERAKALVAANMEPLRALERLLLEQEVVHEAGLKALLGEKATPDDNNTSTAAA 94
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BLAST of mRNA_Ecto-sp13_S_contig7511.18700.1 vs. uniprot
Match: A0A507ZMC0_9FLAO (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Haloflavibacter putidus TaxID=2576776 RepID=A0A507ZMC0_9FLAO)

HSP 1 Score: 58.9 bits (141), Expect = 1.390e-5
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 3 
Query:   42 SEKVMAEIDQEVQTLLAQQYQRALALIRTHRDKIGSLSAALLEHNVVHKADLRRILGDK 218
            SEK    ID+E+  ++  QYQRA+AL+  H+DK+  L+  LLE  V+ K DL+RI GD+
Sbjct:  578 SEKTSELIDKEISNIIESQYQRAIALLSKHKDKLTQLAEILLEKEVIFKDDLQRIFGDR 636
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BLAST of mRNA_Ecto-sp13_S_contig7511.18700.1 vs. uniprot
Match: UPI000EF5A3AC (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Mesonia aquimarina TaxID=1504967 RepID=UPI000EF5A3AC)

HSP 1 Score: 58.5 bits (140), Expect = 1.840e-5
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 3 
Query:   42 SEKVMAEIDQEVQTLLAQQYQRALALIRTHRDKIGSLSAALLEHNVVHKADLRRILGDK 218
            SEK    ID+E+  ++  QY+RALAL+  H+DK+  L+  LLE  V+ K DL+RI GD+
Sbjct:  577 SEKTSELIDKEISNIIETQYERALALLEEHKDKLTELAEILLEKEVIFKDDLQRIFGDR 635
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7511.18700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTT1_ECTSI1.970e-5195.58AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CBI2_9STRA6.050e-840.70Peptidase_M41 domain-containing protein n=1 Tax=Tr... [more]
A0A507ZMC0_9FLAO1.390e-547.46ATP-dependent zinc metalloprotease FtsH n=1 Tax=Ha... [more]
UPI000EF5A3AC1.840e-547.46ATP-dependent zinc metalloprotease FtsH n=1 Tax=Me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7511contigEcto-sp13_S_contig7511:3033..5953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score168.3
Seed ortholog evalue1.7e-39
Seed eggNOG ortholog2880.D7FTT1
Model size1381
KEGG koko:K03798,ko:K08956,ko:K09552
KEGG ModuleM00742
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0465@1,KOG0731@2759
Cds size291
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01000,ko01002,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464020.0431497-UTR-Ecto-sp13_S_contig7511:3032..30851681464020.0431497-UTR-Ecto-sp13_S_contig7511:3032..3085Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7511 3033..3085 +
1681464020.091932-UTR-Ecto-sp13_S_contig7511:4916..59531681464020.091932-UTR-Ecto-sp13_S_contig7511:4916..5953Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7511 4917..5953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464020.056411-CDS-Ecto-sp13_S_contig7511:3085..31121681464020.056411-CDS-Ecto-sp13_S_contig7511:3085..3112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7511 3086..3112 +
1681464020.0705388-CDS-Ecto-sp13_S_contig7511:3537..36751681464020.0705388-CDS-Ecto-sp13_S_contig7511:3537..3675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7511 3538..3675 +
1681464020.081534-CDS-Ecto-sp13_S_contig7511:4790..49161681464020.081534-CDS-Ecto-sp13_S_contig7511:4790..4916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7511 4791..4916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7511.18700.1prot_Ecto-sp13_S_contig7511.18700.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7511 3086..4916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7511.18700.1

>prot_Ecto-sp13_S_contig7511.18700.1 ID=prot_Ecto-sp13_S_contig7511.18700.1|Name=mRNA_Ecto-sp13_S_contig7511.18700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MAEIDQEVQTLLAQQYQRALALIRTHRDKIGSLSAALLEHNVVHKADLRR
ILGDKVTVESEEAAAAAALTEGLLNVDGEKAENASTSGAGTAPTEA*
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mRNA from alignment at Ecto-sp13_S_contig7511:3033..5953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7511.18700.1 ID=mRNA_Ecto-sp13_S_contig7511.18700.1|Name=mRNA_Ecto-sp13_S_contig7511.18700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2921bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7511:3033..5953+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCACGACGGGCCTATTGTCTCCCGGTCACCGCCAGCTTAGCGAGAAG
GTCATGGCCGAGATTGACCAAGAAGTCCAGGTGAGATAAGACTCGTCGTT
ATCTGTGCTGTTTGCTACTACCATCTTTCAAGTCGCTCTGCTCTGATCAG
CAATGCAACCTATCCCTTGGTATACCAGGCAACGGTAGGTGGGTCCGTCA
TACTAGCTGGATGCAATTTCTGATTGCAAGGTGTAGGCTTGTCGCCAGAA
TGAATGGGACGAAGCGCGCGCAGATCGATTTTGGATATCAGCACGCAAAG
GGTAGCTGGATAGAAGGCGTAGACGATGGAACCAAGAACTCTTGTCTTTT
CTGTCTCTCCCTCGCTCCCCCTCCCTCCCCCCCCCGTTTCTCTCTCTTTC
CCTCTCTCTCTCCCCCCCCCTTCTGTCCCTCTCCCTCCCTCCCTCTCTCC
CCTCCCTCCTTCTCCCTCCCTCTCTCTCCCCTCTCTTCTTCTTGGTTTCA
TGCAGACCCTCTTGGCGCAGCAGTACCAGCGCGCCCTCGCCCTGATCCGA
ACGCACCGCGACAAGATCGGCAGCCTGTCGGCGGCCCTCCTCGAGCACAA
CGTCGTGCACAAGGCAGACCTGCGAAGAATCCTGGGAGACAAAGTGTGTA
TCGTTGTGGATTGTCTGGACATTCAGACCGTGCCGATCTCTGTGTAGAAA
CAACGTCCGTGAACTTGCGCGGACGCCTGACGTGGTCAAAGGGTTGAAAC
CCTGTGTGTGTTTTGTTTTATAATGAGCATCGATCGCGCTAACCGGCTGA
CCAATGACGAGATGTCAGTCTTCGTGAGGTTGAAAACACGAAACACTTCC
GAATGCCATGAACTCGGACCCCGTGAGGGGGCGGCATGGGGGAGGCTCAG
CTATTCTCTGGATTGAAGACAGAAACGGCAGCAAAAGAAGAAAACTGCAC
GTGTCTTCCAAGGCTGGTACCTTTCACTCTACTTCGTTTTGGAGTGTTTT
CTTTCTTTCACCACCATCATTCTCATCGTCATTTTAACAACTGTTTGTCG
GCAGTTCCTCTCTAGCCCTGCGTCGTTTGTTGTGGGGACGGTCATCTGGC
TCTCTTGCTTTCTTCCACTCCATGCTTCTCTCCTCCATTACTGTTTTGGT
CTTTCTCTCGTCCTCCCGTTCCCTCTCCTCCCCCTTCATGGCTCTCAAAT
GGGTTTGTGTGTGTTTCTTTTAGAATCGTTGGTGCCGCCGGCTGGCTAGT
TTTGCATAGAAATTTGGCCTCGGCTCATCCAAATCGCACGTTAGCTTGAG
TGCAAGGTTAAGAGCGCGACAATTTGAATCAACCCGTTGGGGGTCGATTG
CGCCCGAAGATGACGCTGTGAGGGCGAGTGATGAAGCCTAACACGAACGG
ATGAGGAAGCCTTCAATGGTGGCTGGTCCGGCACTGCCACTGCCACTGCC
ACTGCTGCTGCTGCTGCTTTTGTTGTTGTATTGATCCCGCACGCATCTCC
CTTACAGGCTTCTCTCCTGCGGTGAGGGGCATGAGGCAACTTCAACTTTG
TATTCAAAGACATTTTGCGACGTTTCCCCATGCTTCCGCTCTCTCCCTGA
TGGCCCACCCTTCTCTCTCTGTCTCTCTCTCTCGCTGCCTCTCTCCCCCT
CTCTGCTCCTCTCTCATCCTCTCAATCTCTCAACCTCCCTGTACCTCTCT
CTCCCCTTCCTTCTCTCTTTCTCTGTCTCCCTGTCTCTCTCTTGTATGCT
TTACACAGGTGACCGTTGAGTCGGAAGAAGCTGCTGCAGCAGCCGCCCTG
ACCGAGGGCCTCCTCAATGTCGATGGGGAGAAGGCCGAAAACGCAAGCAC
TTCTGGTGCTGGTACTGCACCCACCGAAGCTTAAAGTAGACTTCAAAATG
GGGGGATTGACACGCTCATGGAGAATGCGAGTGTGCTTTTCCTGTGTGTG
TTGGAGGGCGCGGGTAGCGTATGGCATGGAATCTACATCTTTTGGTGCGT
GTGTGTGCGTTTTTTGTTGGGAAGAATGGAAACGGCGTGGGTGACATAAC
AAGGGAGACACGTCCGGTAGACAATGGGTATTTGTTCGATCGGTGCCGCT
GGTAGCTCTCCGCGCGGACATCGTGCGGGCGATCCTGCATCGAGGCGGGG
CGATGTCGTCTTTAGAGCTTTGAGCTGGAAAATCCTGCATCGAGGCGGGG
CGATGTCGTCTTTAGAGCTTTGAGGTGGAAAATCAAACTTGGGTGCAGAC
CACGTGGCATGATGTTCGAGGGGCGGGGGAAGTACCCGTAGGTTGCTTAT
CTCATGATGACGTATCTTGCCTGTTAGAGGCGCAGAGAAGGGGTGGCAGA
AGACGTGATGCCTTCAAAGGCCGCTGGCGGAAGGCGTTCTTGTTCTGCCC
CAGAAAGCGTTGCTGTGATTGTTGTTGTTTTCACGTTAAAAGCCGTTGCG
GTCTCCGCTCAGTACCTTCTCATTTTCGCACTGGTCCAATAAAAGCGTGC
CCTGCATAAAACCCTCGTATTTGTAGAACCAATGCAGATCAAGAGTCTGG
TATCGGTGTGAGAGGCATGACGGAGGTGGGGGGTTGGGGTGAAGGGTGAT
GGGAGGACAGGTAATCTTGACCTCGACGTTGTAGTTGTTTTGGAGTTGGT
GTCAGGTGCAGCATGGTGAAAAACTGACCAAGATCTCGTGAAGAAGGGTT
TGAGTGTGCTAAGTATCAATTGGCTTTTCGAAGATCGTTTAGCGGCTATT
TTGATTTTGAAAAACCGTAGATAAGGGGTAGCAGTCACGTGATGCATTTT
GTGTTTGAAAATTCTCGTGATAGCGCCATGTGAAAAGGATAAATCTTGGA
TAGGCTGGCCCAGAGAGAGGGAGCGGTTTTGGCCCCATGTTGCAAGCGGG
TAAACATAAAGTGTAGTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7511:3033..5953+

>mRNA_Ecto-sp13_S_contig7511.18700.1 ID=mRNA_Ecto-sp13_S_contig7511.18700.1|Name=mRNA_Ecto-sp13_S_contig7511.18700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7511:3033..5953+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGAGATTGACCAAGAAGTCCAGACCCTCTTGGCGCAGCAGTACCA
GCGCGCCCTCGCCCTGATCCGAACGCACCGCGACAAGATCGGCAGCCTGT
CGGCGGCCCTCCTCGAGCACAACGTCGTGCACAAGGCAGACCTGCGAAGA
ATCCTGGGAGACAAAGTGACCGTTGAGTCGGAAGAAGCTGCTGCAGCAGC
CGCCCTGACCGAGGGCCTCCTCAATGTCGATGGGGAGAAGGCCGAAAACG
CAAGCACTTCTGGTGCTGGTACTGCACCCACCGAAGCTTAA
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