mRNA_Ecto-sp13_S_contig748.18667.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig748.18667.1
Unique NamemRNA_Ecto-sp13_S_contig748.18667.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig748.18667.1 vs. uniprot
Match: D7FR85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR85_ECTSI)

HSP 1 Score: 388 bits (997), Expect = 1.820e-133
Identity = 201/216 (93.06%), Postives = 205/216 (94.91%), Query Frame = 1 
Query:  136 SLADAEGKHIDPQKFQEHFALEGADWFSDRLLAVILEEGKVRSGSDAGKLDLEGFREGVALTGRSSRSGMVQALYNICNPNGASSLDRQQLARLFEAAHCCSKAAWRRSPTTTDDADTVTASTSTSIAEEASGSSSENSQFRSDKLAESVANHLGSARMGFSQIGQGGGGNGEGGVSPQGLKAWVSERAPLLHHCLSTFIHTRCFLYGDARSLGVE 783
            SLADAEGKHIDPQKF+EHFALEGADWFSDRLLAV LEEGKVRSGSDAGKLDLEGFREGVALTGRSSRSGMVQALYNICNP GASSLD+QQLARLFEAAHCC  AAWRRSPTTTDD  T TASTSTSI E ASGSSSENSQFRSDKLAESVANHLGSARMG S+IG GGGG+GEGGVSPQGLKAWVSERAPLLHHCLSTFIHTRCFLYGDARSLGVE
Sbjct:    5 SLADAEGKHIDPQKFREHFALEGADWFSDRLLAVFLEEGKVRSGSDAGKLDLEGFREGVALTGRSSRSGMVQALYNICNPTGASSLDQQQLARLFEAAHCCCTAAWRRSPTTTDDTATGTASTSTSIPEVASGSSSENSQFRSDKLAESVANHLGSARMGVSRIGPGGGGDGEGGVSPQGLKAWVSERAPLLHHCLSTFIHTRCFLYGDARSLGVE 220
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BLAST of mRNA_Ecto-sp13_S_contig748.18667.1 vs. uniprot
Match: A0A6H5JHS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS8_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 4.470e-82
Identity = 127/144 (88.19%), Postives = 137/144 (95.14%), Query Frame = 1 
Query:    1 MGNSFATSNGARSAGKEEERVERQGSAALGPFSFDEFALLEELFLSLADAEGKHIDPQKFQEHFALEGADWFSDRLLAVILEEGKVRSGSDAGKLDLEGFREGVALTGRSSRSGMVQALYNICNPNGASSLDRQQLARLFEAAH 432
            MGNSFATSNG RSAGK+EERVERQGSAALGPFSFDEF+LLEELF+SLADAEGKHIDPQKF+EHFALEGADWFSDRLLA+ LEEGKVR+GSDAGKLDLEGFREGVALTGRSSRSGMVQALYNICNP GASSLD+QQ++   E+ H
Sbjct:    1 MGNSFATSNGPRSAGKQEERVERQGSAALGPFSFDEFSLLEELFMSLADAEGKHIDPQKFREHFALEGADWFSDRLLAMFLEEGKVRTGSDAGKLDLEGFREGVALTGRSSRSGMVQALYNICNPTGASSLDQQQVSVSEESTH 144
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BLAST of mRNA_Ecto-sp13_S_contig748.18667.1 vs. uniprot
Match: A0A6H5JM32_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM32_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 8.930e-27
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:  610 MGFSQIGQGGGGNGEGGVSPQGLKAWVSERAPLLHHCLSTFIHTRCFLYGDARSLGVE 783
            MG SQIG GGGGNGEGGVSPQGL AWVSERAPLLHHCLSTFIHTRCFLYGDARSLGVE
Sbjct:    1 MGVSQIGPGGGGNGEGGVSPQGLTAWVSERAPLLHHCLSTFIHTRCFLYGDARSLGVE 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig748.18667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FR85_ECTSI1.820e-13393.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHS8_9PHAE4.470e-8288.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM32_9PHAE8.930e-2794.83TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig748contigEcto-sp13_S_contig748:206..5943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size783
Hectar predicted targeting categoryother localisation
Exons4
Cds size783
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464016.7648244-CDS-Ecto-sp13_S_contig748:205..5831681464016.7648244-CDS-Ecto-sp13_S_contig748:205..583Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig748 206..583 -
1681464016.7769763-CDS-Ecto-sp13_S_contig748:984..10791681464016.7769763-CDS-Ecto-sp13_S_contig748:984..1079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig748 985..1079 -
1681464016.7889216-CDS-Ecto-sp13_S_contig748:1637..18131681464016.7889216-CDS-Ecto-sp13_S_contig748:1637..1813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig748 1638..1813 -
1681464016.8004742-CDS-Ecto-sp13_S_contig748:5809..59431681464016.8004742-CDS-Ecto-sp13_S_contig748:5809..5943Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig748 5810..5943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig748.18667.1prot_Ecto-sp13_S_contig748.18667.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig748 206..5943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig748.18667.1

>prot_Ecto-sp13_S_contig748.18667.1 ID=prot_Ecto-sp13_S_contig748.18667.1|Name=mRNA_Ecto-sp13_S_contig748.18667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp
MGNSFATSNGARSAGKEEERVERQGSAALGPFSFDEFALLEELFLSLADA
EGKHIDPQKFQEHFALEGADWFSDRLLAVILEEGKVRSGSDAGKLDLEGF
REGVALTGRSSRSGMVQALYNICNPNGASSLDRQQLARLFEAAHCCSKAA
WRRSPTTTDDADTVTASTSTSIAEEASGSSSENSQFRSDKLAESVANHLG
SARMGFSQIGQGGGGNGEGGVSPQGLKAWVSERAPLLHHCLSTFIHTRCF
LYGDARSLGVE
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mRNA from alignment at Ecto-sp13_S_contig748:206..5943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig748.18667.1 ID=mRNA_Ecto-sp13_S_contig748.18667.1|Name=mRNA_Ecto-sp13_S_contig748.18667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig748:206..5943- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAACTCTTTCGCTACAAGTAATGGGGCTCGGTCGGCTGGGAAGGA
GGAAGAACGGGTGGAGCGGCAGGGCTCTGCTGCTCTCGGGCCGTTTTCAT
TTGACGAATTTGCTCTCCTCGAGGAGCTGTTCTTGTGAGTGCAGTCGTCG
ACAGCAGCAGCAGTTGACCGCAACAGCAGCTGCTATTTACTGCAGCAGGA
GCTGTCCAGCTTTTCAATTGTTCGAGTGCGGCTTCGTGCGCACTTCTCTA
CGATCGTCCAACCTACTCGTGGGCTGCATAATTTTGCAAACGATTCGTAT
GCGAACATACTGCTGTATCAGTGCAGTAGATTGTCGCCCAACGTGCCGCC
CATGGCAGTTTGAGCATTAGAGCGCAGCAGTCGTGTCGTGTGTTGTGACT
CCGCCGCGCAAAACTCCTTGTGGATGGACTGAGAAGACGTTAGCGAGGCT
GGCGCTTCGTATGTCGGGGCGCTCTTCACTCACGTGTTGCAATGCACTTC
CTCGTTACCCGTGAATATATTTGATGAAGTCACACGGCTTGGGTGATGGC
AACACTCGTAGCAGCATTGAACAATCGTAGGCGGTCACTCGTAGGCGGTG
TTGTGAGAAATGTGTCCTTCGCGATGGGGTACGCTGTGTGCCGCAGCACC
CAGACAGCTGTAGCCAGCTCCTATCGTTGGTGCTCCCAACACAATGAATA
CACCAAAGACCATCGCTCTTCGTAGCTGCTGCTTGGCAGTGGCTTTGTGT
AGAGTATACACCGAAAAGACTAGCCCGTGGAGCAGGGCCGGCGCTCGGTC
GTCGGTAGGTGGTGTCACTCACAGACCCTTCCTTGCGGTAAGCGGTGTTA
CTCGTACATGAAAAGCCTCGTTTGTTTGTTTAGTTAATGATTCTCTCGCT
CTTGCAGGGCTGCTCCCAATCCTCCGTGGTCCGCTTTCCTTTGATCCTTT
GAACAGATTGGATTTCGTGCGTGACGGTTCGACGAAACGACGAAAAATAA
ATTCCAACGGGAGCGAGGGTGTCGCTTTCTCTGTCGCGGAGTCCTGCTGT
TCTACTAATGAAAAATGCGAAGTGTTGTACACCATCATGTCTCGCAGCGG
ATGGATGCACCGAGCATAAATATTCCTACGCCAGTCAGGAGTGTGCTGTA
GCCTTTCTTTTTTTGTTGTGCGCTGGTTAGCGCCTGTCTGGTGGTTGTGG
ATGACAAAAAGGCAGGGAGGGCTGTCCTCGTTAATTTCTCCGCGGTAATT
TTATCAATAAAGCCATGGTTATTACCGTTTCCCGTCATTCCGTAAAAAAT
GAGAACTATCGTTCCCATCCACATCGTTTCCGTGCTATATTGATTTTACC
GTGAGCGCCCAAACCGTTAACGAACACATTGACGTGCCCCATTACAGTAC
ACAAAATTTCCGCGGAAAAATCGTAGTTCCCGTGCTTTCGAGTTACCGCG
GAGTAGTTACCGTAAGAGCAGCACAATCCCATCTACAGTTCCGCAAAGAA
ACACTATAATAGTTGCATTATTTGTTACACCGTGGAATAATTCCACCGTT
TCTCTGTGGATGAGGAAGGCGGCGCTTGCGTGTTACCTGTCGTGTTGATG
ATATGTTATTACTTGGCGCATGATCGACTTATTACCTCGTCTTGAGGCCA
CGAGAGCCTGTCAACGCAATGAAGTGGATACATGCTGTCTGGTTTTTACC
CTTCTTTTTATGCCACCGGTTTGGTTGACGGACGTGATGCTCGGTGAACG
AATGTGCCTCGCACATCTGGTGTGCGGCGACCACACCCTTCAGGAACACT
TGAAAGCAAGCAAACGAAACAGGGCCCGACGTGCCATGGTGGTGTGGTTA
ACTGTACAAGTTATTCCGTGCGTGGTGACCAGTTACGGTAGCAATGAAAG
CATATTTCTGTGCACTACTACTACTGTGGGGTTTGGTGACCGTACAAGAA
AATCACCGTGTTGACCAGTCACCGTAAAAACATGCATATTCTTGTGCATT
ACCGTGGTGGCTGGTTGCCATACTAAAAAATTGCCGTGGTGACGACTTAC
CGTACGGAATTTACCGTGGTGGCCAGTTGCCGCCCAAAAATCACGGTACC
ATGCCGTGGTGGCCAGTTTCCGCCCAAGAATTACTGTACTGTGCCGTCGT
GGCCAGTTGCCACATGGAGCATGCCGTGGTGGCCAGTTACCGCCCAAAAA
TTACTGTATTGTACCGTGGTTTCTTGTTAACGAGGACAATGATTCCGACA
TGAAAAGTCATTAACGAGGACAGCCCTGCAAAAGGGTGCGTTTTGGAGCG
AGCGATGACCGGCCGTGCTTCTTCACACGCCTGTGCCTATGTATCCGCTG
TGCAGCTCTGCTGCAGCAAGGAGTAGTAGTCTGTACTAATGTAGTCTACA
CTCCAAGACTACACACACTGCTGCTGCTGTACAAGTGATCGCCTCGTTTT
CCCGGTGGAGGCTGGCGAGAGACGCACAAAAAGTTCCTTGGACAAAAACT
TGTAGTTGTCGCATACCTACATTACAGCAAGTAGTTAGTGTGGTGTCGTA
GGAGCTGTAGGGATGTATGTGGCTGCGGATGGACGGACGTGTGTGCTGTG
CAAAGGCGTGCATCCTGTTACAGCAGCTGTAGTAGTAGGAACGGTACACC
GGATGAATCTATCTTCTTCTATGCATATTACAGCAGCATGTCCGCGTTGG
AGCTGTACTACTGCTGCTGCTGTAGGTGCTGGTAGATGTCAGGTACAGTA
CATGCTGCTGTACAATGAAAGAAGAATGCCATGGATTTCAGTTTTGAATT
TTTGGAGGGGTTCATCGGCAGCAGAGAGACCAAAAAAAGCTTTGGTGTGC
TATGCATACAATTACTCGAGAACAGAGTGCGGGCAATTGGAAACTACATA
CTGCATACCCGACACGCAACAAAGCTAAGGAGTGTGACAGACACAGGTAC
GATAGAGCTGCGTTAAGCACGGCCGACTCTCTACGTAAGAATTAGATACA
GGGACTTTCACGAGAGGGATGCGGAGTTATCGATGCGGCAAAAAGTTAGT
GTGCTGGGCAGCGCAGGGCAACTCGACCCGCAAATCAGCCGAAACGATGT
TCGTTGCCTTGTTCGCTCCCCTCGCCACCGTCCTTACCGAGACTTGCGCA
GCACGCCTATTTCGTCCTAGCGCATCGAGCCGCGGCCAGCATGGGGGTGT
ATCTTGCTCGGTTATGGAGTACGCCGTGGCGAAAAAATGCAAGACGTTGC
CCAAGAGGCGCCTCAGCACCTCTGATTTGGGGAGGTATTGTACTTTTTCG
CTGCGCTGCGTGCGACGCGAGTTGATACGCTCGCCGTGCTGGCGAGGACT
GGGGTATGGGCAGGCATGACCACGAACGCCGTCGTCGTGGCAGTTGTGCA
GCGTTGTTGAGCTCAAAGCATTCAGCCGCAGAGAAGCAGAGTAAACAGGT
GTCAACACTAAGAGCAAGTTAAAGGGATTTTGAGCGAGACGAAATGCTTG
GGTTTGGCACCGGTGTCGCTTCGATTGAAAATTCTTCGACAGGGCTCTCG
AGGGTTAGGTCTCGCGAAGGCACCGCCGCGATTTCATGCTCGTAGCTTTC
GCGAGCCGAGAGAAATCAGGTCATTTTTGTCCGGTCGCTTTTTCTCCGGT
CAAAATTCCGTCAAGTTTTCCCTTAGCTGAAACAAATCCTAAACGGATCA
GAATGGCTGCAGCACAACCATGGATTTCCAATGCTCTGGAGTAGCAGTGG
AAGGACCTACGTTCACATTTGTGCCCGAGCTTGGGTGCAATGAGGTTGAT
TCCTGGTGTACCCACCGCCCACTCTACGCGTGAACAAACGCCCCTTGTTC
CGCCGCTAGGCCGTTTTGGTTTAGTGGACGCCGGCAAGAAACAAAACAAA
AGAAACGCACATACTCTTCGCGTTTCGTCGACGTCGCGACCGTTGTTTTT
CACTGCTTCTCACTACCTTTCCCTGCACTTCACACGCACCATAAACAGCA
ACAAGTAGAGCAACAGACACGATCATGAGGGTACCGCCCACAGCTTATTT
TTCTCCCGCTATCGCACCCCCCGAAAAAAACAGACAAAAACCTTGGTGAT
ACGCGTGCTTTTTTGCGTCTGTACGAGCAGGAGCCTTGCCGATGCCGAAG
GGAAGCACATTGACCCACAAAAGTTTCAGGAACACTTCGCGCTCGAAGGC
GCGGACTGGTTCTCTGACCGACTGCTGGCCGTGATTCTGGAGGAAGGAAA
GGTCCGATCAGGCTCTGATGCGGGCAAGCTCGATCTAGAAGGGTTTCGAG
AAGGAGGTACGCCGCGGCAGAGAAGGTGGACCGGCCGGGGGGGCGGGGGG
GAGGTACCCCTTTACTGCTTTCCTTCGTCGCTTGACCATTGACCATGCAC
CGCTGTCGAGAGACGGGAGGCGCAAGGCAGAGATGTTCGTGTAGTAGAGA
GTGGTGCGAGGAAGAGGAGGAAGATGGGAGAGGGAACGCCGTTGGGATAT
AGGTTTTCGAATCGGGCATGCTCTCTCGAACGAGGCATCGGTGGACGCCT
CCATCGCACCCATGACATTGTTGTTGGGCTTGCGGTAATGGGCAAAATTT
TGTGGGGTAAGTTGGTCGGAGAAGGCTGAAACCCCCGCCCCCCTCCCCGG
GTCTTGGAATGATGGCTTCTACTCCACAGTGTGTTCTGCGCTGAATCGCC
ACCGATGTGTTTTTTGTTTTCGTGCCACGCTCTGTCCATCGTCACGTCAA
CCACACCCGCGGCAACCACACCTCTGAACAACAATCGGCGACAACATCAA
CATCAACGTACAATACAATCACCAACAACACCGACGACTGTTACGGTGAC
AATGACTCCTCCAGTGGCATTGACTGGGAGAAGCAGCCGATCGGGGATGG
TGCAGGCGCTGTACAACATCTGTAATCCTAACGGAGCGTCTTCCTTGGAT
CGACAGCAGGTGAGCGTCTCCGAAGAATCAGCACACGCCAAGAATTCATG
TTTTTGTTTGTCGATTGTGTTTCACGTCTTCGATCTCTTTCTCAATGTTT
AGTCCGCCATTGTGATCGAAAAGGGACATACGGGTACGGCACGACCGAAC
GCTCTCTGTTAGTCTCCAAGTCGGTCGAGTTGGAAACCACACCGGTAGCG
CTAGCAGCAGAAACAAAAAGAGCCACGTGAAGGACACGCTCCGTTCCCCG
CCCCCCTTCACACTGCCCGACCAAAGCAGGACGTCAATGCTCCCCACCCC
GCGCGCTCAGGTCAATGGTCGAACGGCTACGACATTCATGTACATGAGTT
CACCCCCCCTCCCCCTCCCTTCGCTCAACGCGATGTCTTGCAACCAAAAC
AATTGACCAGCTCGCCCGGTTGTTCGAGGCGGCGCATTGCTGCTCCAAAG
CGGCTTGGCGACGCTCCCCCACCACCACAGACGACGCCGACACCGTTACT
GCGAGCACCAGCACGAGCATTGCGGAAGAAGCCAGCGGTTCTTCCTCAGA
GAACAGCCAGTTTCGGTCCGACAAGCTCGCCGAGAGCGTTGCAAACCACC
TCGGCTCGGCGAGAATGGGGTTTTCGCAGATTGGACAGGGCGGGGGGGGT
AATGGGGAGGGAGGCGTATCCCCTCAGGGGCTAAAAGCGTGGGTGTCGGA
AAGGGCCCCCCTCTTGCACCACTGCCTGAGCACGTTTATACACACAAGGT
GCTTTCTTTACGGAGACGCCAGGAGCCTGGGAGTAGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig748:206..5943-

>mRNA_Ecto-sp13_S_contig748.18667.1 ID=mRNA_Ecto-sp13_S_contig748.18667.1|Name=mRNA_Ecto-sp13_S_contig748.18667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig748:206..5943- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAACTCTTTCGCTACAAGTAATGGGGCTCGGTCGGCTGGGAAGGA
GGAAGAACGGGTGGAGCGGCAGGGCTCTGCTGCTCTCGGGCCGTTTTCAT
TTGACGAATTTGCTCTCCTCGAGGAGCTGTTCTTGAGCCTTGCCGATGCC
GAAGGGAAGCACATTGACCCACAAAAGTTTCAGGAACACTTCGCGCTCGA
AGGCGCGGACTGGTTCTCTGACCGACTGCTGGCCGTGATTCTGGAGGAAG
GAAAGGTCCGATCAGGCTCTGATGCGGGCAAGCTCGATCTAGAAGGGTTT
CGAGAAGGAGTGGCATTGACTGGGAGAAGCAGCCGATCGGGGATGGTGCA
GGCGCTGTACAACATCTGTAATCCTAACGGAGCGTCTTCCTTGGATCGAC
AGCAGCTCGCCCGGTTGTTCGAGGCGGCGCATTGCTGCTCCAAAGCGGCT
TGGCGACGCTCCCCCACCACCACAGACGACGCCGACACCGTTACTGCGAG
CACCAGCACGAGCATTGCGGAAGAAGCCAGCGGTTCTTCCTCAGAGAACA
GCCAGTTTCGGTCCGACAAGCTCGCCGAGAGCGTTGCAAACCACCTCGGC
TCGGCGAGAATGGGGTTTTCGCAGATTGGACAGGGCGGGGGGGGTAATGG
GGAGGGAGGCGTATCCCCTCAGGGGCTAAAAGCGTGGGTGTCGGAAAGGG
CCCCCCTCTTGCACCACTGCCTGAGCACGTTTATACACACAAGGTGCTTT
CTTTACGGAGACGCCAGGAGCCTGGGAGTAGAA
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