mRNA_Ecto-sp13_S_contig7475.18663.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7475.18663.1
Unique NamemRNA_Ecto-sp13_S_contig7475.18663.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7475.18663.1 vs. uniprot
Match: D7G7M3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M3_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 6.220e-31
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 1
Query:    1 MNSTPIGDAGEIIHCAASQGLAFAVQALLAEGHIACDEKDRFGKTPIHWAAEQGHVDTVLALMDAGALV 207
            MNSTPIG+AGE+IHCAASQGL F VQALLAEG IACD KDRFGKTP+HWAA QGHVD VL LMDAGALV
Sbjct:   49 MNSTPIGEAGEMIHCAASQGLTFTVQALLAEGRIACDAKDRFGKTPLHWAAGQGHVDIVLVLMDAGALV 117          
BLAST of mRNA_Ecto-sp13_S_contig7475.18663.1 vs. uniprot
Match: A0A6H5L5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T2_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 7.720e-31
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    1 MNSTPIGDAGEIIHCAASQGLAFAVQALLAEGHIACDEKDRFGKTPIHWAAEQGHVDTVLALMDAGALV 207
            MNSTPIG+AGEIIHCAASQGL FAVQALLAE   ACD KDRFGKTP+HWAA QGHVDTVLAL+DAGALV
Sbjct:   41 MNSTPIGEAGEIIHCAASQGLTFAVQALLAERRTACDAKDRFGKTPLHWAAGQGHVDTVLALVDAGALV 109          
BLAST of mRNA_Ecto-sp13_S_contig7475.18663.1 vs. uniprot
Match: A0A6H5L664_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L664_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.820e-30
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    1 MNSTPIGDAGEIIHCAASQGLAFAVQALLAEGHIACDEKDRFGKTPIHWAAEQGHVDTVLALMDAGALV 207
            MNSTPIG+AGEIIHCAASQGL FAVQALLAE   ACD KDRFGKTP+HWAA QGHVDTVLAL++AGALV
Sbjct:   48 MNSTPIGEAGEIIHCAASQGLTFAVQALLAERRTACDAKDRFGKTPLHWAAGQGHVDTVLALVNAGALV 116          
BLAST of mRNA_Ecto-sp13_S_contig7475.18663.1 vs. uniprot
Match: A0A7R9E3S2_9NEOP (Hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R9E3S2_9NEOP)

HSP 1 Score: 53.9 bits (128), Expect = 1.870e-6
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   34 IIHCAASQGLAFAVQALLAEGHIACDEKDRFGKTPIHWAAEQGHVDTVLALMD--AGALVDSRDHFKATPLMLAALGG 261
            + H AA   L+     LL  G +  ++ D  G TP+H+AA+ GHV+TV  L+    G  VD+R+H   TPLM AAL G
Sbjct:   49 VSHIAAHGSLSMLEAILLLPG-VDVNKADNEGNTPLHFAAQAGHVETVNFLLSRSTGIEVDARNHLGFTPLMKAALQG 125          
BLAST of mRNA_Ecto-sp13_S_contig7475.18663.1 vs. uniprot
Match: A0A1S3HL03_LINUN (transient receptor potential cation channel subfamily A member 1 homolog n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HL03_LINUN)

HSP 1 Score: 53.9 bits (128), Expect = 2.040e-6
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1
Query:  109 DEKDRFGKTPIHWAAEQGHVDTVLALMDAGALVDSRDHFKATPLMLAAL 255
            DE DR+G TP+H AA+ GH++ V  LM+  A+VD ++  + TPL LAA+
Sbjct:  486 DEPDRYGNTPLHIAAQLGHINCVKLLMEHNAMVDDKNEDEQTPLHLAAM 534          
BLAST of mRNA_Ecto-sp13_S_contig7475.18663.1 vs. uniprot
Match: A0A7R9G391_TIMSH (Hypothetical protein n=1 Tax=Timema shepardi TaxID=629360 RepID=A0A7R9G391_TIMSH)

HSP 1 Score: 53.1 bits (126), Expect = 3.370e-6
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1
Query:   34 IIHCAASQGLAFAVQALLAEGHIACDEKDRFGKTPIHWAAEQGHVDTVLALMD--AGALVDSRDHFKATPLMLAALGG 261
            + H AA   L      LL  G +  ++ D  G TP+H+AA+ GHV+TV  L+    G  VD+R+H   TPLM AAL G
Sbjct:   34 VSHIAAHGSLPMLEAILLLPG-VDVNKADNEGNTPLHFAAQAGHVETVNFLLSRSTGIEVDARNHLGFTPLMKAALQG 110          
BLAST of mRNA_Ecto-sp13_S_contig7475.18663.1 vs. uniprot
Match: A0A7R9JBZ7_TIMCA ((California timema) hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R9JBZ7_TIMCA)

HSP 1 Score: 53.1 bits (126), Expect = 3.450e-6
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1
Query:   34 IIHCAASQGLAFAVQALLAEGHIACDEKDRFGKTPIHWAAEQGHVDTVLALMD--AGALVDSRDHFKATPLMLAALGG 261
            + H AA   L      LL  G +  ++ D  G TP+H+AA+ GHV+TV  L+    G  VD+R+H   TPLM AAL G
Sbjct:   50 VSHIAAHGSLPMLEAILLLPG-VDVNKADNEGNTPLHFAAQAGHVETVNFLLSRSTGIEVDARNHLGFTPLMKAALQG 126          
BLAST of mRNA_Ecto-sp13_S_contig7475.18663.1 vs. uniprot
Match: J3NJ46_GAET3 (Ankyrin repeat domain-containing protein n=2 Tax=Magnaporthaceae TaxID=81093 RepID=J3NJ46_GAET3)

HSP 1 Score: 52.4 bits (124), Expect = 5.040e-6
Identity = 27/61 (44.26%), Postives = 34/61 (55.74%), Query Frame = 1
Query:   37 IHCAASQGLAFAVQALLAEGHIACDEKDRFGKTPIHWAAEQGHVDTVLALMDAGALVDSRD 219
            IHCAA+ G    V  LL  G    D  D  G+T +H A  +GH DT +AL+ AGA  D +D
Sbjct:  146 IHCAAAVGSTPMVSLLLTTGKSPLDATDSAGQTALHHAVAEGHGDTAVALLKAGASTDKKD 206          
BLAST of mRNA_Ecto-sp13_S_contig7475.18663.1 vs. uniprot
Match: D7G7L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L7_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 6.530e-6
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1
Query:  187 MDAGALVDSRDHFKATPLMLAALGG 261
            MDAGALVDSRDHFKA PLMLAALGG
Sbjct:    1 MDAGALVDSRDHFKAAPLMLAALGG 25          
BLAST of mRNA_Ecto-sp13_S_contig7475.18663.1 vs. uniprot
Match: A0A4Q4U2P3_9PEZI (Uncharacterized protein n=1 Tax=Monosporascus sp. GIB2 TaxID=2211647 RepID=A0A4Q4U2P3_9PEZI)

HSP 1 Score: 52.4 bits (124), Expect = 7.100e-6
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   37 IHCAASQGLAFAVQALLAEGHIACDEKDRFGKTPIHWAAEQGHVDTVLALMDAGALVDSRDHF 225
            +H  A  G+   VQ LL  G +  D KD +G+TP+ WAAE GH+  V  L+D GA ++++D +
Sbjct:  639 LHLVAYFGIETVVQPLL--GSMGPDLKDSYGRTPLLWAAENGHMAVVTQLLDKGADIEAKDRY 699          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7475.18663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7M3_ECTSI6.220e-3185.51Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5L5T2_9PHAE7.720e-3186.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L664_9PHAE3.820e-3085.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9E3S2_9NEOP1.870e-642.31Hypothetical protein n=2 Tax=Timema TaxID=61471 Re... [more]
A0A1S3HL03_LINUN2.040e-648.98transient receptor potential cation channel subfam... [more]
A0A7R9G391_TIMSH3.370e-642.31Hypothetical protein n=1 Tax=Timema shepardi TaxID... [more]
A0A7R9JBZ7_TIMCA3.450e-642.31(California timema) hypothetical protein n=2 Tax=T... [more]
J3NJ46_GAET35.040e-644.26Ankyrin repeat domain-containing protein n=2 Tax=M... [more]
D7G7L7_ECTSI6.530e-696.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4Q4U2P3_9PEZI7.100e-641.27Uncharacterized protein n=1 Tax=Monosporascus sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7475contigEcto-sp13_S_contig7475:7217..7477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score123.6
Seed ortholog evalue4.4e-26
Seed eggNOG ortholog2880.D7G7M3
Preferred nameASB7
Model size261
KEGG koko:K10329
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size261
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464016.4850283-CDS-Ecto-sp13_S_contig7475:7216..74771681464016.4850283-CDS-Ecto-sp13_S_contig7475:7216..7477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7475 7217..7477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7475.18663.1prot_Ecto-sp13_S_contig7475.18663.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7475 7217..7477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7475.18663.1

>prot_Ecto-sp13_S_contig7475.18663.1 ID=prot_Ecto-sp13_S_contig7475.18663.1|Name=mRNA_Ecto-sp13_S_contig7475.18663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MNSTPIGDAGEIIHCAASQGLAFAVQALLAEGHIACDEKDRFGKTPIHWA
AEQGHVDTVLALMDAGALVDSRDHFKATPLMLAALGG
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mRNA from alignment at Ecto-sp13_S_contig7475:7217..7477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7475.18663.1 ID=mRNA_Ecto-sp13_S_contig7475.18663.1|Name=mRNA_Ecto-sp13_S_contig7475.18663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7475:7217..7477+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAGCACTCCAATCGGAGACGCAGGCGAGATAATTCACTGCGCCGC CTCGCAGGGCCTGGCTTTCGCCGTCCAAGCCTTGCTTGCGGAAGGGCACA TCGCCTGTGACGAAAAGGATCGCTTCGGCAAAACTCCTATTCACTGGGCT GCCGAGCAAGGACACGTCGACACTGTCTTAGCGCTCATGGATGCCGGAGC CTTGGTCGACTCTCGCGACCACTTCAAGGCCACACCACTCATGCTTGCGG CCTTGGGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7475:7217..7477+

>mRNA_Ecto-sp13_S_contig7475.18663.1 ID=mRNA_Ecto-sp13_S_contig7475.18663.1|Name=mRNA_Ecto-sp13_S_contig7475.18663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7475:7217..7477+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAGCACTCCAATCGGAGACGCAGGCGAGATAATTCACTGCGCCGC
CTCGCAGGGCCTGGCTTTCGCCGTCCAAGCCTTGCTTGCGGAAGGGCACA
TCGCCTGTGACGAAAAGGATCGCTTCGGCAAAACTCCTATTCACTGGGCT
GCCGAGCAAGGACACGTCGACACTGTCTTAGCGCTCATGGATGCCGGAGC
CTTGGTCGACTCTCGCGACCACTTCAAGGCCACACCACTCATGCTTGCGG
CCTTGGGCGGG
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