mRNA_Ecto-sp13_S_contig7473.18660.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7473.18660.1
Unique NamemRNA_Ecto-sp13_S_contig7473.18660.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7473.18660.1 vs. uniprot
Match: A0A6H5JFJ1_9PHAE (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ1_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 4.200e-69
Identity = 124/127 (97.64%), Postives = 124/127 (97.64%), Query Frame = 1 
Query:    1 MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASGGGEASPATGASGEGGGGGVEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAYLSAKADKSTTVGV 381
            MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASGGGEASPATG  GEGGGGGVEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAYLSAK DKSTTVGV
Sbjct:  410 MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASGGGEASPATGPPGEGGGGGVEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAYLSAKIDKSTTVGV 536
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BLAST of mRNA_Ecto-sp13_S_contig7473.18660.1 vs. uniprot
Match: D7FI28_ECTSI (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI28_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.120e-49
Identity = 94/127 (74.02%), Postives = 100/127 (78.74%), Query Frame = 1 
Query:    1 MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASGGGEASPATGASGEGGGGGVEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAYLSAKADKSTTVGV 381
            MVA MTPLPV+G P KT TL GVDS HS+ Q+PRGVPVAT+G+GN TN GLL V M   G        G  G+G G G EGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAYLSAKADKSTTVGV
Sbjct:    1 MVAPMTPLPVLGFPFKTWTLRGVDSFHSLFQIPRGVPVATLGLGNGTNPGLLPVGMWPWGEPRFRVGRGPPGKGEGLGGEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAYLSAKADKSTTVGV 127
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BLAST of mRNA_Ecto-sp13_S_contig7473.18660.1 vs. uniprot
Match: A0A835YZI5_9STRA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI5_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.940e-33
Identity = 78/127 (61.42%), Postives = 88/127 (69.29%), Query Frame = 1 
Query:    1 MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASGGGEASPATGASGEGGGGGVEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAYLSAKADKSTTVGV 381
            M AAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATV IGNA NAGLLAVRML                    G+  + LL  M ++M    +EV  KA  ME  GWKAYL+AK+++STTVG+
Sbjct:  440 MCAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVAIGNAMNAGLLAVRML--------------------GMADAKLLSQMADFMGEQEQEVLAKAEAMEASGWKAYLAAKSNQSTTVGI 546
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BLAST of mRNA_Ecto-sp13_S_contig7473.18660.1 vs. uniprot
Match: A0A8J2SB06_9STRA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SB06_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.350e-30
Identity = 74/126 (58.73%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:    1 MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASGGGEASPATGASGEGGGGGVEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAYLSAK-ADKSTTV 375
            MVAAMTPLPV+GVPVKTS LSGVDSLHSIVQMPRGVPVATV IGNATNAGLLA R+L+                         L  A++ Y A    EV  KA  +E  GWKAYL  K A KSTTV
Sbjct:   74 MVAAMTPLPVVGVPVKTSALSGVDSLHSIVQMPRGVPVATVAIGNATNAGLLAARILS--------------------TSNDALADALEAYAASQRDEVLGKAEVLEGSGWKAYLERKEAPKSTTV 179
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BLAST of mRNA_Ecto-sp13_S_contig7473.18660.1 vs. uniprot
Match: A0A7S2TYW5_9EUKA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TYW5_9EUKA)

HSP 1 Score: 117 bits (292), Expect = 7.050e-30
Identity = 71/123 (57.72%), Postives = 83/123 (67.48%), Query Frame = 1 
Query:    1 MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASGGGEASPATGASGEGGGGGVEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAYLSAKADKST 369
            MVAA+TPLPVIGVPVKTSTLSGVDSL+SIVQMPRGVPVATV IGN+TNAGLLAVRML                    GV+ S LL  M  Y A+S + V  K  K+++QGW+ YL     K++
Sbjct:  145 MVAALTPLPVIGVPVKTSTLSGVDSLYSIVQMPRGVPVATVAIGNSTNAGLLAVRML--------------------GVQDSGLLVKMKAYQAKSEEGVLTKVSKVDQQGWRQYLDKMPTKNS 247
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BLAST of mRNA_Ecto-sp13_S_contig7473.18660.1 vs. uniprot
Match: A0A7S2G7J7_9DINO (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2G7J7_9DINO)

HSP 1 Score: 110 bits (276), Expect = 9.000e-29
Identity = 75/125 (60.00%), Postives = 85/125 (68.00%), Query Frame = 1 
Query:    1 MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASGGGEASPATGASGEGGGGGVEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAYLSAKADKSTTV 375
            MVAA+T LPVIGVPVKTS LSGVDSL+SIVQMP+GVPVATV IGNA NAGLLA+RMLA  GG+A  A+                L A  +  ARS  EVEEKA  +EE G  AYL++   KS TV
Sbjct:   29 MVAALTVLPVIGVPVKTSALSGVDSLYSIVQMPKGVPVATVAIGNARNAGLLAIRMLAGCGGDAKLAS----------------LMAKFQDDARS--EVEEKAATLEEVGEAAYLASSGKKSATV 135
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BLAST of mRNA_Ecto-sp13_S_contig7473.18660.1 vs. uniprot
Match: A0A7S4MV77_9EUKA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MV77_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 1.580e-28
Identity = 68/114 (59.65%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:    1 MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASGGGEASPATGASGEGGGGGVEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAY 342
            MVAA+TPLPVIGVPVK+S LSG DSL SIVQMPRGVPVATV IGNA NAGLLAVRML                    G+E   L R M E+M R   EV +KA K+EE GW+ Y
Sbjct:   12 MVAAITPLPVIGVPVKSSALSGNDSLLSIVQMPRGVPVATVAIGNAANAGLLAVRML--------------------GMEDIHLRRKMQEFMRRQETEVLDKASKLEEVGWREY 105
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BLAST of mRNA_Ecto-sp13_S_contig7473.18660.1 vs. uniprot
Match: A0A7S1RCU3_ALECA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RCU3_ALECA)

HSP 1 Score: 113 bits (283), Expect = 1.310e-27
Identity = 77/125 (61.60%), Postives = 88/125 (70.40%), Query Frame = 1 
Query:    1 MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASGGGEASPATGASGEGGGGGVEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAYLSAKADKSTTV 375
            MVAA+T LPVIGVPVKTS LSGVDSL+SIVQMP+GVPVATV IGNA NAGLLAVRMLA  GG+A+ A              S + +  D+  ARS  EVEEKA K+EE G +AYL+    KS TV
Sbjct:  257 MVAALTVLPVIGVPVKTSALSGVDSLYSIVQMPKGVPVATVAIGNARNAGLLAVRMLAGCGGDAALA--------------SRMAKFQDD--ARS--EVEEKAAKLEEVGEEAYLANSGKKSATV 363
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BLAST of mRNA_Ecto-sp13_S_contig7473.18660.1 vs. uniprot
Match: A0A7S4IYQ0_9EUKA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IYQ0_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 2.610e-27
Identity = 68/114 (59.65%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:    1 MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASGGGEASPATGASGEGGGGGVEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAY 342
            MVAA+TPLPVIGVPVK+S LSG DSL SIVQMPRGVPVATV IGNA NAGLLAVRML                    G+E   L R M E+M R   EV +KA K+EE GW+ Y
Sbjct:  115 MVAAITPLPVIGVPVKSSALSGNDSLLSIVQMPRGVPVATVAIGNAANAGLLAVRML--------------------GMEDIHLRRKMQEFMRRQETEVLDKASKLEEVGWREY 208
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BLAST of mRNA_Ecto-sp13_S_contig7473.18660.1 vs. uniprot
Match: A0A4S4L3T5_9AGAM (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L3T5_9AGAM)

HSP 1 Score: 105 bits (263), Expect = 2.750e-27
Identity = 64/114 (56.14%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:    1 MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASGGGEASPATGASGEGGGGGVEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAY 342
            M+AAMTPLP+IGVPVK S L GVDSLHSIVQMPRG+PVATV I N+TNA LLAVR+L +G     PA                LL  MDE+M +  +EV  K  K+EE GW+ Y
Sbjct:    1 MLAAMTPLPIIGVPVKGSVLDGVDSLHSIVQMPRGIPVATVAINNSTNAALLAVRILGAG----VPA----------------LLEDMDEFMKKQEEEVHAKITKLEEVGWEKY 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7473.18660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFJ1_9PHAE4.200e-6997.64Phosphoribosylaminoimidazole carboxylase n=1 Tax=E... [more]
D7FI28_ECTSI2.120e-4974.02Phosphoribosylaminoimidazole carboxylase n=1 Tax=E... [more]
A0A835YZI5_9STRA1.940e-3361.42Phosphoribosylaminoimidazole carboxylase n=1 Tax=T... [more]
A0A8J2SB06_9STRA2.350e-3058.73Phosphoribosylaminoimidazole carboxylase n=1 Tax=P... [more]
A0A7S2TYW5_9EUKA7.050e-3057.72Phosphoribosylaminoimidazole carboxylase n=1 Tax=L... [more]
A0A7S2G7J7_9DINO9.000e-2960.00Phosphoribosylaminoimidazole carboxylase n=1 Tax=A... [more]
A0A7S4MV77_9EUKA1.580e-2859.65Phosphoribosylaminoimidazole carboxylase n=1 Tax=P... [more]
A0A7S1RCU3_ALECA1.310e-2761.60Phosphoribosylaminoimidazole carboxylase n=1 Tax=A... [more]
A0A7S4IYQ0_9EUKA2.610e-2759.65Phosphoribosylaminoimidazole carboxylase n=1 Tax=P... [more]
A0A4S4L3T5_9AGAM2.750e-2756.14Phosphoribosylaminoimidazole carboxylase n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7473contigEcto-sp13_S_contig7473:3784..4167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score165.6
Seed ortholog evalue1.5e-38
Seed eggNOG ortholog2880.D7FI28
Preferred nameADE2
Model size384
KEGG rclassRC00590
KEGG koko:K11808
KEGG ReactionR04209
KEGG Pathwayko00230,ko01100,ko01110,map00230,map01100,map01110
KEGG ModuleM00048
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004638,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009113,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009405,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042440,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044419,GO:0044424,GO:0044464,GO:0046040,GO:0046083,GO:0046084,GO:0046112,GO:0046148,GO:0046390,GO:0046483,GO:0051704,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons1
EggNOG free text desc.phosphoribosylaminoimidazole carboxylase activity
EggNOG OGsCOG0152@1,KOG2835@2759
Ec32 ortholog descriptionPhosphoribosylaminoimidazole carboxylase PurE domain
Ec32 orthologEc-10_003280.1
EC4.1.1.21
Cds size384
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464016.3049095-CDS-Ecto-sp13_S_contig7473:3783..41671681464016.3049095-CDS-Ecto-sp13_S_contig7473:3783..4167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7473 3784..4167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7473.18660.1prot_Ecto-sp13_S_contig7473.18660.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7473 3784..4167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7473.18660.1

>prot_Ecto-sp13_S_contig7473.18660.1 ID=prot_Ecto-sp13_S_contig7473.18660.1|Name=mRNA_Ecto-sp13_S_contig7473.18660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAG
LLAVRMLASGGGEASPATGASGEGGGGGVEGSPLLRAMDEYMARSGKEVE
EKALKMEEQGWKAYLSAKADKSTTVGV*
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mRNA from alignment at Ecto-sp13_S_contig7473:3784..4167-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7473.18660.1 ID=mRNA_Ecto-sp13_S_contig7473.18660.1|Name=mRNA_Ecto-sp13_S_contig7473.18660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7473:3784..4167- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCTGCCATGACCCCATTGCCGGTGATCGGCGTCCCAGTCAAGAC
CTCGACGCTGAGCGGGGTGGACTCTCTCCACAGCATCGTCCAGATGCCCC
GCGGGGTGCCGGTGGCCACGGTGGGGATCGGCAACGCGACCAACGCAGGG
CTGCTAGCGGTGCGGATGCTGGCCTCGGGGGGCGGGGAGGCGTCTCCGGC
GACAGGGGCCTCCGGCGAAGGGGGGGGCGGGGGGGTGGAGGGGTCGCCGC
TCCTGCGAGCCATGGACGAGTACATGGCGCGGTCTGGTAAGGAGGTCGAG
GAGAAAGCGCTGAAGATGGAGGAGCAGGGCTGGAAGGCGTATCTCAGCGC
CAAGGCTGACAAGAGTACCACCGTCGGTGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7473:3784..4167-

>mRNA_Ecto-sp13_S_contig7473.18660.1 ID=mRNA_Ecto-sp13_S_contig7473.18660.1|Name=mRNA_Ecto-sp13_S_contig7473.18660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7473:3784..4167- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCTGCCATGACCCCATTGCCGGTGATCGGCGTCCCAGTCAAGAC
CTCGACGCTGAGCGGGGTGGACTCTCTCCACAGCATCGTCCAGATGCCCC
GCGGGGTGCCGGTGGCCACGGTGGGGATCGGCAACGCGACCAACGCAGGG
CTGCTAGCGGTGCGGATGCTGGCCTCGGGGGGCGGGGAGGCGTCTCCGGC
GACAGGGGCCTCCGGCGAAGGGGGGGGCGGGGGGGTGGAGGGGTCGCCGC
TCCTGCGAGCCATGGACGAGTACATGGCGCGGTCTGGTAAGGAGGTCGAG
GAGAAAGCGCTGAAGATGGAGGAGCAGGGCTGGAAGGCGTATCTCAGCGC
CAAGGCTGACAAGAGTACCACCGTCGGTGTTTGA
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