mRNA_Ecto-sp13_S_contig7470.18657.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7470.18657.1
Unique NamemRNA_Ecto-sp13_S_contig7470.18657.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7470.18657.1 vs. uniprot
Match: D8LEC4_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEC4_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 1.100e-129
Identity = 212/216 (98.15%), Postives = 214/216 (99.07%), Query Frame = 1
Query:    1 MGDRLEERKDFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGNDFPNLKEVIXXXXXXXXXVGDWAQLNTTLTLISKRRGQHSKAVTAMVQEAVGWLDETPDKDTRVSLLVALRDITDGKIYVEAERAKLTRILAKIKEEDGDVAGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVK 648
            MGDRLEERKDFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGNDFPNLKEVIXXXXXXXXXV DWAQLNTTLTLISKRRGQHSKAVTAMVQEAVGWLDETPDKDTRV LLVALRDITDGKIYVEAERAKLTR+LAKIKEEDGDVAGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKV+
Sbjct:    1 MGDRLEERKDFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGNDFPNLKEVIXXXXXXXXXVEDWAQLNTTLTLISKRRGQHSKAVTAMVQEAVGWLDETPDKDTRVLLLVALRDITDGKIYVEAERAKLTRMLAKIKEEDGDVAGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVR 216          
BLAST of mRNA_Ecto-sp13_S_contig7470.18657.1 vs. uniprot
Match: A0A835ZAZ9_9STRA (PCI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ9_9STRA)

HSP 1 Score: 264 bits (675), Expect = 1.280e-83
Identity = 146/216 (67.59%), Postives = 175/216 (81.02%), Query Frame = 1
Query:    1 MGDRLEERKDFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGNDFPNLKEVIXXXXXXXXXVGDWAQLNTTLTLISKRRGQHSKAVTAMVQEAVGWLDETPDKDTRVSLLVALRDITDGKIYVEAERAKLTRILAKIKEEDGDVAGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVK 648
            M DRLEERKDFT ++  K+PEA +L EGGKL + LD++M+LER CRVGND        XXXXXXXXX       N T TL++KRRGQ  + +TAMVQE + WLDETPDK T+++L+VALRDITDGKI+VE ERA+LTR+LA IKE+DGDVAGA EVLQEV VETYGAL KKEK DFILEQ+RLTL KKD+VRALIQSRKINRK++  +DMQ++KV+
Sbjct:    1 MSDRLEERKDFTEDLKVKVPEATRLTEGGKLNEALDLLMTLERNCRVGNDXXXXXXXXXXXXXXXXXXXXXXXXNATATLLAKRRGQQGRTITAMVQECMLWLDETPDKATKIALIVALRDITDGKIFVEGERARLTRLLADIKEKDGDVAGAQEVLQEVAVETYGALDKKEKTDFILEQVRLTLLKKDYVRALIQSRKINRKIIEGDDMQELKVR 216          
BLAST of mRNA_Ecto-sp13_S_contig7470.18657.1 vs. uniprot
Match: A0A7S2V6L0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6L0_9STRA)

HSP 1 Score: 256 bits (653), Expect = 3.700e-80
Identity = 135/211 (63.98%), Postives = 166/211 (78.67%), Query Frame = 1
Query:   13 LEERKDFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGNDFPNLKEVIXXXXXXXXXVGDWAQLNTTLTLISKRRGQHSKAVTAMVQEAVGWLDETPDKDTRVSLLVALRDITDGKIYVEAERAKLTRILAKIKEEDGDVAGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKV 645
            LE +KDFT EV+ KLP A KL+EGG+L + LD +  +E+ CR+GND  NLKE+I           DW QLN TLTL+SKRR Q +KAV  MVQEA+GW++ETP  + +++LL  LRDITDGKI++EAERA+LTR LA + E  G V  AA+VLQEVHVETYG+L K+EKA+FILEQIRLTLAKKD+VRALIQSRKI+RKVL +EDMQDIK+
Sbjct:    3 LEIKKDFTKEVSEKLPIAIKLSEGGQLTEALDSLAGVEKKCRLGNDTKNLKEIILTMVKMCRKCEDWEQLNATLTLVSKRRSQSTKAVLGMVQEAMGWIEETPTPEAKLALLNTLRDITDGKIFLEAERARLTRQLAALHEAAGRVDQAADVLQEVHVETYGSLDKREKAEFILEQIRLTLAKKDYVRALIQSRKISRKVLEEEDMQDIKI 213          
BLAST of mRNA_Ecto-sp13_S_contig7470.18657.1 vs. uniprot
Match: A0A7S3XTB1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTB1_HETAK)

HSP 1 Score: 249 bits (635), Expect = 8.070e-80
Identity = 124/212 (58.49%), Postives = 168/212 (79.25%), Query Frame = 1
Query:   13 LEERKDFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGNDFPNLKEVIXXXXXXXXXVGDWAQLNTTLTLISKRRGQHSKAVTAMVQEAVGWLDETPDKDTRVSLLVALRDITDGKIYVEAERAKLTRILAKIKEEDGDVAGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVK 648
            LEE+KDF+ EV  KLP A KLAE G+L   L+++ S+E+ CR+GND  NLKEVI           +W QLN+TLT++SKRR Q++KA+T MV+ ++ W+ ETP KD +V+L++ LRDITDGKI++EAERA+LTRILA + E DGDV  A + + EVHVETYGA+ KKEKA+FILEQ+RLTLA++D+VRA+I SRK+NRK+L +++MQ+IKV+
Sbjct:   20 LEEKKDFSKEVGEKLPAATKLAEAGQLEPALELLTSVEKKCRLGNDVANLKEVILTMVRLCRKAENWEQLNSTLTVLSKRRSQNTKAITGMVRTSMEWVPETPSKDAKVALVITLRDITDGKIFLEAERAQLTRILADVYEADGDVQAACDCMGEVHVETYGAVGKKEKAEFILEQLRLTLAREDYVRAVINSRKLNRKILKEDEMQEIKVR 231          
BLAST of mRNA_Ecto-sp13_S_contig7470.18657.1 vs. uniprot
Match: A0A7S1UA35_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UA35_9STRA)

HSP 1 Score: 228 bits (580), Expect = 6.540e-69
Identity = 123/213 (57.75%), Postives = 160/213 (75.12%), Query Frame = 1
Query:   13 LEERKDFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGNDFPNLKEVIXXXXXXXXXVGDWAQLNTTLTLISKRRGQHSKAVTAMVQEAVGWLDETPDKDTRVS-LLVALRDITDGKIYVEAERAKLTRILAKIKEEDGDVAGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVK 648
            L+E+KD++AEV ++LP A+ LAEGG+L + +D +M LE+ CR+GND  +LK+++          GDW  +NTTL  ISKRR Q   A+ AM  EA+ +LDE     T V  LL  LR++TDG+I+VEAERAKLT+ LA IKEEDG V  A ++LQEVHVETYGALTKKEKA+FILEQIRL+L K+DFVRALI SRK+N+KVL ++ M D+K+K
Sbjct:   28 LKEKKDYSAEVESRLPGAQALAEGGQLREAIDGLMGLEKACRLGNDNISLKKLVLAMVKMCHAAGDWDMVNTTLLTISKRRSQSKVAIIAMTNEAMTYLDEPGLARTEVQKLLETLREVTDGRIFVEAERAKLTKRLADIKEEDGLVDEACDILQEVHVETYGALTKKEKAEFILEQIRLSLKKRDFVRALINSRKVNKKVLEEDGMDDLKLK 240          
BLAST of mRNA_Ecto-sp13_S_contig7470.18657.1 vs. uniprot
Match: A0A7S2RAT1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAT1_9STRA)

HSP 1 Score: 221 bits (564), Expect = 1.030e-66
Identity = 109/212 (51.42%), Postives = 160/212 (75.47%), Query Frame = 1
Query:   13 LEERKDFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGNDFPNLKEVIXXXXXXXXXVGDWAQLNTTLTLISKRRGQHSKAVTAMVQEAVGWLDETPDKDTRVSLLVALRDITDGKIYVEAERAKLTRILAKIKEEDGDVAGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVK 648
            +E+++D++      +PEA  L++ G+L+  +D+++SLE+ CR+GND   LK  +          GDWA+LN+ L  I+KR  Q   AV A+V   +GW+D TPDK T+V LLVALR++TDGKIYVEAERA++TR LA+IKE DGD+AGA +VL +V+VETYGAL+K+EK DFILEQIR+T+AK+D+VR LI ++K+ +K++ + D+QD+K++
Sbjct:   37 IEKKEDYSELAGTLVPEATLLSQNGELSKAVDMLLSLEKKCRLGNDVSTLKLTVTTICELCRGQGDWAKLNSALGTIAKRHQQSKYAVMAVVNLCMGWIDTTPDKATKVDLLVALREVTDGKIYVEAERARITRQLAEIKEADGDIAGACDVLLDVYVETYGALSKREKVDFILEQIRMTIAKQDWVRVLIVAKKVQKKIIDEPDLQDLKMR 248          
BLAST of mRNA_Ecto-sp13_S_contig7470.18657.1 vs. uniprot
Match: A0A4D9CRV0_9STRA (PCI domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRV0_9STRA)

HSP 1 Score: 219 bits (558), Expect = 4.160e-66
Identity = 116/220 (52.73%), Postives = 163/220 (74.09%), Query Frame = 1
Query:    1 MGDRLEERKDFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGNDFPNLKEVIXXXXXXXXXVGDWAQLNTTLTLISKRRGQHSKAVTAMVQEAVG--WLDETPDKDTRVSLLVALRDITDGKIYVEAERAKLTRILAKIKEEDGDVAGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKINRKVLLDED--MQDIKVK 648
            M  +L E+KD +A V A LPEAK LA+ GKLA+ +++++ +E+  R+GND  +LKEV+           DW Q+NTTLT +SKRR Q+  A++AMVQEA+G  +LD TPD +++  L+V LRDITDGKI+VE ERA+LTR L+ + E +G VA A +++Q+VHVETYG+L K+EK +FILEQIRLTLAKKDF+R  I ++K+ +K+L  ED  +Q +K+K
Sbjct:    1 MDGQLIEKKDCSAAVAAALPEAKSLADAGKLAEAVELLLGVEKQARMGNDVTSLKEVVLATIRLVREKKDWEQMNTTLTQLSKRRSQNKAAISAMVQEAMGPSYLDATPDAESKRKLIVTLRDITDGKIFVETERARLTRTLSHLLEAEGKVAEACDIIQDVHVETYGSLDKQEKLEFILEQIRLTLAKKDFIRTYIIAKKVTKKLLEGEDPALQALKLK 220          
BLAST of mRNA_Ecto-sp13_S_contig7470.18657.1 vs. uniprot
Match: A0A7S2GQN4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GQN4_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.410e-61
Identity = 108/212 (50.94%), Postives = 146/212 (68.87%), Query Frame = 1
Query:   13 LEERKDFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGNDFPNLKEVIXXXXXXXXXVGDWAQLNTTLTLISKRRGQHSKAVTAMVQEAVGWLDETPDKDTRVSLLVALRDITDGKIYVEAERAKLTRILAKIKEEDGDVAGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVK 648
            +E+ +DFT     ++ EA+ L + G+L   +++++SLE+ CR+G D  NLK+ +          GDW +LN TL +ISKR  Q   A++A+V +   WLDETPDK+T+V LL  L ++T GKIYVE ERA LTR LA IKE DGDV GA   + EV+VETYGAL K+EK DFILEQIRL + KKD VRA I S+K++RK L D + QD+K++
Sbjct:   35 IEKTEDFTELAKTQIAEAQLLVDNGELQKAIELLLSLEKKCRLGLDIANLKQTVTAMTLLCRKTGDWDKLNATLLVISKRHQQSKHAISAVVAQGSSWLDETPDKETKVKLLKTLLEVTVGKIYVEGERATLTRQLAAIKEADGDVDGACAAMLEVYVETYGALNKREKIDFILEQIRLCILKKDMVRAYIVSKKVSRKSLDDNEHQDLKLR 246          
BLAST of mRNA_Ecto-sp13_S_contig7470.18657.1 vs. uniprot
Match: A0A7S2XQT3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQT3_9STRA)

HSP 1 Score: 200 bits (509), Expect = 8.970e-60
Identity = 117/226 (51.77%), Postives = 155/226 (68.58%), Query Frame = 1
Query:    4 GDRLEERKDFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGNDFPNLKEVIXXXXXXXXXVGDWAQLNTTLTLISKRRGQHSKAVTAMVQEAVGW---------LDETPD--KDTRVSLLVALRDITDGKIYVEAERAKLTRILAKIKEEDGDVAGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVK 648
            G +LEER D T E  AKL +++ L     L + L ++  LE+ CR+GND PNL  V           GD A +  TL  ++ RR Q +KA++A+V + + W         L  T D  K++R+ L+VALRDITDGK+++EAERA+LTR LA IKEEDGDVAGAAEVLQ+VHVETYG+L+K+EK +FILEQ+RLTLAK+DF+RA I S KINRK + +E M+ +K K
Sbjct:   11 GGQLEERVDLTKETDAKLAQSQSLP----LKEALALLGGLEKQCRIGNDLPNLVRVCEASMQLAKDSGDDAVVVQTLEHLASRRSQKTKAISALVAKCLPWVLTEKSHVPLAVTSDEQKESRLKLVVALRDITDGKLFLEAERARLTRALATIKEEDGDVAGAAEVLQDVHVETYGSLSKREKVEFILEQMRLTLAKQDFIRASIVSGKINRKNISEEGMEALKTK 232          
BLAST of mRNA_Ecto-sp13_S_contig7470.18657.1 vs. uniprot
Match: UPI0016033A9D (26S proteasome non-ATPase regulatory subunit 12-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016033A9D)

HSP 1 Score: 199 bits (506), Expect = 3.860e-59
Identity = 101/207 (48.79%), Postives = 148/207 (71.50%), Query Frame = 1
Query:   28 DFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGNDFPNLKEVIXXXXXXXXXVGDWAQLNTTLTLISKRRGQHSKAVTAMVQEAVGWLDETPDKDTRVSLLVALRDITDGKIYVEAERAKLTRILAKIKEEDGDVAGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVK 648
            D++A V  KLP  + LA+ GKL + LDI++SLE+  R   D  +   ++           +W  LN  +TL+SKRR Q  +A+T MVQEAV ++D+TP+ +T++ L+  LR +T+GKIYVE ERA+LTRILAKIKE++G++  AA VLQ++ VET+G++ KKEK +FILEQ+RL LAKKD++R  I S+KIN KV  ++D +++K+K
Sbjct:   14 DYSATVDEKLPLCENLAKEGKLQEALDILLSLEKQTRTAADMHSTARILVKVAQLCFECNNWEALNENITLLSKRRSQLKQAITKMVQEAVTYVDKTPNMETKLKLIDTLRTVTEGKIYVEIERARLTRILAKIKEDEGNITEAANVLQDLQVETFGSMEKKEKVEFILEQMRLCLAKKDYIRTQIISKKINTKVFSEKDTEELKLK 220          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7470.18657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEC4_ECTSI1.100e-12998.15PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZAZ9_9STRA1.280e-8367.59PCI domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2V6L0_9STRA3.700e-8063.98Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XTB1_HETAK8.070e-8058.49Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1UA35_9STRA6.540e-6957.75Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2RAT1_9STRA1.030e-6651.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CRV0_9STRA4.160e-6652.73PCI domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2GQN4_9STRA2.410e-6150.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2XQT3_9STRA8.970e-6051.77Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
UPI0016033A9D3.860e-5948.7926S proteasome non-ATPase regulatory subunit 12-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7470contigEcto-sp13_S_contig7470:12..3113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score383.6
Seed ortholog evalue6e-104
Seed eggNOG ortholog2880.D8LEC4
Preferred namePSMD12
Model size657
KEGG koko:K03035
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000338,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007088,GO:0007275,GO:0007346,GO:0008021,GO:0008150,GO:0008152,GO:0008180,GO:0008541,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016192,GO:0016579,GO:0016604,GO:0016607,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030071,GO:0030133,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044456,GO:0044464,GO:0045055,GO:0045202,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070382,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:0097458,GO:0097708,GO:0098793,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Exons5
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsCOG5071@1,KOG1498@2759
Cds size657
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464016.0656261-CDS-Ecto-sp13_S_contig7470:11..1281681464016.0656261-CDS-Ecto-sp13_S_contig7470:11..128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7470 12..128 -
1681464016.0788102-CDS-Ecto-sp13_S_contig7470:513..6271681464016.0788102-CDS-Ecto-sp13_S_contig7470:513..627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7470 514..627 -
1681464016.0880277-CDS-Ecto-sp13_S_contig7470:1009..11411681464016.0880277-CDS-Ecto-sp13_S_contig7470:1009..1141Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7470 1010..1141 -
1681464016.0982106-CDS-Ecto-sp13_S_contig7470:1719..19321681464016.0982106-CDS-Ecto-sp13_S_contig7470:1719..1932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7470 1720..1932 -
1681464016.110364-CDS-Ecto-sp13_S_contig7470:3032..31131681464016.110364-CDS-Ecto-sp13_S_contig7470:3032..3113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7470 3033..3113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7470.18657.1prot_Ecto-sp13_S_contig7470.18657.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7470 12..3113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7470.18657.1

>prot_Ecto-sp13_S_contig7470.18657.1 ID=prot_Ecto-sp13_S_contig7470.18657.1|Name=mRNA_Ecto-sp13_S_contig7470.18657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=219bp
MGDRLEERKDFTAEVTAKLPEAKKLAEGGKLADGLDIIMSLERLCRVGND
FPNLKEVILTAARLCRQVGDWAQLNTTLTLISKRRGQHSKAVTAMVQEAV
GWLDETPDKDTRVSLLVALRDITDGKIYVEAERAKLTRILAKIKEEDGDV
AGAAEVLQEVHVETYGALTKKEKADFILEQIRLTLAKKDFVRALIQSRKI
NRKVLLDEDMQDIKVKRG*
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mRNA from alignment at Ecto-sp13_S_contig7470:12..3113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7470.18657.1 ID=mRNA_Ecto-sp13_S_contig7470.18657.1|Name=mRNA_Ecto-sp13_S_contig7470.18657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7470:12..3113- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGATCGGTTGGAAGAGAGAAAGGATTTTACTGCGGAGGTGACCGC GAAGCTTCCTGAAGCCAAGAAGCTTGCGGAGGTACGGTGGCACACAGCAG CACCAGTACCTGCACCGCGACAGGCATAGGTCTGACAGAGTTATGGTGCA TGGTGGCATTCAGATTCGCAGTTGGCAATATCCCCTCCCATTTTTTTTTG TTGGGTTTTTGGCGTCCTCTTTTTGTGCAAGCCTATGCTTTCTCTCCTTT CTCGCTGTGCTGTTGGAGGTGCATAACGCGCTCAGGCTTAGCATTGGCAT GGCCAGGTCTTGCATTGTACTTTAGGCTGCATGGATTGCTTGGTGAGCCC GCATTGCGGTTGGATGCTTGCGAGATGTTCTTGTCCTCTCCGAGATGGCT GTAAGCGCCGCGCTTTTCGATTGCAAGCTGATTCTTTGCCTTGAAAGCGA ACAGCTTGCGGGAACACTGCTGTGCCCCTTTCCCAGCGACGGCGGGGTAC CGAAGAGGTAGGAGTGACACCGACACGAAGTCAACCACCCGCCTTGTGAG GGTACAGCAGTAATTAGACCGGGAGGTTGGGGCGCATTCGCCCGCACACC TTGGTTGAGCACGCAACTTACCCAAAGTACGGTAGCAAACCCTAGAATGC CTCGTGCTCTCGAAACCGAATTGCTGCGATGCAGCTCACAAGGAGCGGCA AGTACACCACCGCAGTATTCAATGCGGACACGTCAACAAAGCCGGCGGGT CAGCTTGCAGGTCATGATAAACAGGGCATACAGCTCTGCCTTTTCTCTTC AATGGTGTACCGCTATCGGCATATCGTACGTGCATTGAGCTTGGCATTCC ATACAGAACCCTCTACACAGACCCGTGTCGGGTCATACGAACGCGACGTG ACGCAAGCGAGACGCTTGCCTTTCGTTGGCAGAAATAACGCTACTGATGG TGACGGGCAAGAGAGGAGGCAGGGAAACGGCAGCCCTCCGCTTCGTCCAC ACCCACCCACCTCAATGCTGAAGAGGGGCTCCTTCCGCAATGTACACCGA TCCCTGTAAGAAGGTATCTTCACGCCTTAACCGTCTTCGTCAGGTACGCG CCCACATGGCCCTCAACGCGCTCAACAACCATCTCACTCGTGCAAGCGAA CGACATTTACGGTCTGTATTAAAACTCGCAGGGGGGCAAGCTCGCGGATG GTTTGGACATCATCATGAGCCTGGAGCGGCTGTGCCGCGTGGGCAACGAT TTCCCTAACCTGAAGGAAGTTATTCTGACGGCGGCTAGGCTCTGCCGGCA AGTGGGGGACTGGGCGCAGCTCAACACCACCCTCACGCTCATTTCGAAGA GGAGAGGGCAGCACAGCAAGGCCGTCACGGCCATGGTGCAGGAGGTGGGT TTTGTACTGGATAGATAGGGAGAGCAGGGGTCCGGTCGCTATCTGTGTAA GAGAGAGTGATGCTCTTTTTCCAGTGGAGGCACCGCTTCTTTTGGGAAGA GGTAGGGAGGAGGGGATCACACATGTTGGAAAACGTTTGGTTTCGACAGA AACATTTGGTAAGGCAGTCCTCCGTTCTTGGCTGTAGTTGGACACAGACT TCACGTGCTCCTTGCCGGAGGTGTCAAGCCTTTCTTTTTTTTTCGCGTCC ATCGCTTTGCACCCAAGTCTTTTGACGCCGCAGGCTCCACAATCTGTCCA CCTGTCGCCGTTGCGAGGAGGTACTACTGTAATTGTTGGCAAACACGAAG AGGTCCCACCCAGCCCTTCGCGAATTTTATTGTTTGGTCGGCGGATAGAC CTCAGAACGCTGTCAGGCAGGAGGTGCATCTCTGCTAGAGTTACGTGATT TGGAAGGTGATCAAGCGTTTGGGCTGTAAAAGCACTCTACGAAGCCATTC TTCGATCTAGACCCCCTGACTGCTGTTGCTTGTGCGCTGGTTGACACCAT GCAAACCGTCAACGCTCATCAGGCCGTGGGATGGCTGGACGAAACACCGG ACAAGGACACTCGCGTGTCGCTGCTGGTAGCGCTAAGGGACATCACGGAC GGAAAGATTTACGTGGAGGCCGAGAGAGCCAAGCTCACGAGGATTCTCGC CAAGGTGTGTGAAGTGTGTGATCGAGCTCTTTGCATGGCATACCGCGGCT TTCGGACACCGGGCAAGGTTTGGGGTCGCTTTACATCTTCGTCTCCCTAG CAAAGTAAGTGTTTCAGGGTACGACGGTACACATTGGCAGAGAAGAGTCT GTGCTACAAACGAGAGCCGTCAATTAGCAACAGCAGGTAGCAGCAACAAT CAGCAGCATCGACAAGGACTGTTCGAAAAAACTCTACTTCATTTGACTAC TCAAGCAGCGTCCATCAGACTATTCAAGGAGCGCTGCCTTAGTAGTCTAA TAGATAAGCCTTTATTAAACGACGACTACAAGAGCAACGGGACACACACG CCGCGTTACCACTCTTATCTTGCATCGCTGGATCAGATCAAGGAGGAGGA CGGAGACGTGGCGGGTGCCGCCGAAGTGTTGCAAGAGGTGCACGTCGAGA CCTACGGCGCGCTCACAAAGAAGGAGAAGGCGGACTTTATTCTTGAGCAG GTGAACAGAAACAGAGCGCACGGGTTGCGATGTCGACTTGCGCAGGCGAC GCGCTCTCGGGCTTTCTCCTAGTCGGGGCGTCGATTTGCGTGCAAACGCG GGGTTTTCCTTACGGCCGTGTGTTGGGTTTGCCCTCCTAGAGATTTAGTT GGGGAGACATCAAGCTGCCGCAGGCGCACCTTGTTTTTTGCCAGTCGGAG GTGTGATGGTGATCGTTACGAAGCGGTGTCACCGGGCTCGAAAGCCACGC CCGCTTGATTACTCACCCTATCTTATGGTGCAAACCCTTCACCTCGTGTA GGATAATTTTGATGCATTCCACTGTTTTTGTGCGCTAGCTGTTTTGACAT GTGTTTCTCTGCGCACACGACACGACGCCTTGCAGATCCGCCTGACCCTG GCGAAGAAGGACTTCGTGAGGGCCTTAATCCAGAGCCGTAAGATCAACCG CAAAGTTCTTCTCGACGAAGACATGCAAGACATCAAGGTGAAACGGGGGT AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7470:12..3113-

>mRNA_Ecto-sp13_S_contig7470.18657.1 ID=mRNA_Ecto-sp13_S_contig7470.18657.1|Name=mRNA_Ecto-sp13_S_contig7470.18657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7470:12..3113- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGATCGGTTGGAAGAGAGAAAGGATTTTACTGCGGAGGTGACCGC
GAAGCTTCCTGAAGCCAAGAAGCTTGCGGAGGGGGGCAAGCTCGCGGATG
GTTTGGACATCATCATGAGCCTGGAGCGGCTGTGCCGCGTGGGCAACGAT
TTCCCTAACCTGAAGGAAGTTATTCTGACGGCGGCTAGGCTCTGCCGGCA
AGTGGGGGACTGGGCGCAGCTCAACACCACCCTCACGCTCATTTCGAAGA
GGAGAGGGCAGCACAGCAAGGCCGTCACGGCCATGGTGCAGGAGGCCGTG
GGATGGCTGGACGAAACACCGGACAAGGACACTCGCGTGTCGCTGCTGGT
AGCGCTAAGGGACATCACGGACGGAAAGATTTACGTGGAGGCCGAGAGAG
CCAAGCTCACGAGGATTCTCGCCAAGATCAAGGAGGAGGACGGAGACGTG
GCGGGTGCCGCCGAAGTGTTGCAAGAGGTGCACGTCGAGACCTACGGCGC
GCTCACAAAGAAGGAGAAGGCGGACTTTATTCTTGAGCAGATCCGCCTGA
CCCTGGCGAAGAAGGACTTCGTGAGGGCCTTAATCCAGAGCCGTAAGATC
AACCGCAAAGTTCTTCTCGACGAAGACATGCAAGACATCAAGGTGAAACG
GGGGTAG
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