mRNA_Ecto-sp13_S_contig7469.18656.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7469.18656.1
Unique NamemRNA_Ecto-sp13_S_contig7469.18656.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7469.18656.1 vs. uniprot
Match: D7FXI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.340e-17
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = -2 
Query:  123 REKITGGELCGSGDGSSTTGGGRFVPSRAPLDHRHGVLLLDGLVRAA 263
            RE +TGGEL GSGDGS++TGGGR+VPSRAPLDHRHGVLLLDGLVRAA
Sbjct: 1094 RETVTGGELSGSGDGSTSTGGGRYVPSRAPLDHRHGVLLLDGLVRAA 1140
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BLAST of mRNA_Ecto-sp13_S_contig7469.18656.1 vs. uniprot
Match: A0A6H5KLQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ0_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.030e-9
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = -2 
Query:  126 GGELCGSGDGSSTTGGGRFVPSRAPLDHRHGVLLLDGLVRA 248
            GGEL GSGDGS+T GGGRF PS  PLDHR GVLLLDGLVRA
Sbjct: 1122 GGELSGSGDGSTTIGGGRFFPS-PPLDHRLGVLLLDGLVRA 1161
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7469.18656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXI9_ECTSI2.340e-1787.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLQ0_9PHAE2.030e-982.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7469contigEcto-sp13_S_contig7469:6298..6716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464016.035386-CDS-Ecto-sp13_S_contig7469:6297..67141681464016.035386-CDS-Ecto-sp13_S_contig7469:6297..6714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7469 6298..6714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7469.18656.1prot_Ecto-sp13_S_contig7469.18656.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7469 6298..6714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7469.18656.1

>prot_Ecto-sp13_S_contig7469.18656.1 ID=prot_Ecto-sp13_S_contig7469.18656.1|Name=mRNA_Ecto-sp13_S_contig7469.18656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
SPECLRARTGGGRKVPEEPPPTTTSSLMERCAPPPRGGLLDAARTRPSNS
STPWRWSSGAREGTNRPPPVVELPSPLPQSSPPVIFSLSLAAAAAAAGGF
DPSVTEDSSPPHSSSAAASGGGAERDDKREEPPPLERPM
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mRNA from alignment at Ecto-sp13_S_contig7469:6298..6716+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7469.18656.1 ID=mRNA_Ecto-sp13_S_contig7469.18656.1|Name=mRNA_Ecto-sp13_S_contig7469.18656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=419bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7469:6298..6716+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCACCCGAATGCCTCCGCGCCAGGACGGGGGGGGGACGAAAGGTCCCCGA
AGAACCCCCCCCGACCACGACCTCCTCGCTCATGGAACGCTGCGCTCCGC
CGCCGCGGGGTGGGCTGCTGGACGCCGCCCGCACGAGGCCGTCCAATAGC
AGCACGCCGTGGCGGTGGTCGAGCGGCGCCCGCGAGGGAACAAACCGGCC
GCCTCCGGTAGTAGAGCTCCCATCACCGCTGCCACAAAGTTCGCCCCCCG
TTATTTTCTCTCTTTCGCTCGCCGCCGCCGCCGCCGCCGCTGGGGGGTTC
GACCCTTCCGTTACAGAAGACTCCTCCCCCCCCCACAGCAGCTCTGCCGC
GGCATCAGGTGGTGGCGCAGAGCGTGACGATAAGCGTGAGGAGCCCCCTC
CCCTGGAAAGGCCAATGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7469:6298..6716+

>mRNA_Ecto-sp13_S_contig7469.18656.1 ID=mRNA_Ecto-sp13_S_contig7469.18656.1|Name=mRNA_Ecto-sp13_S_contig7469.18656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7469:6298..6716+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCACCCGAATGCCTCCGCGCCAGGACGGGGGGGGGACGAAAGGTCCCCGA
AGAACCCCCCCCGACCACGACCTCCTCGCTCATGGAACGCTGCGCTCCGC
CGCCGCGGGGTGGGCTGCTGGACGCCGCCCGCACGAGGCCGTCCAATAGC
AGCACGCCGTGGCGGTGGTCGAGCGGCGCCCGCGAGGGAACAAACCGGCC
GCCTCCGGTAGTAGAGCTCCCATCACCGCTGCCACAAAGTTCGCCCCCCG
TTATTTTCTCTCTTTCGCTCGCCGCCGCCGCCGCCGCCGCTGGGGGGTTC
GACCCTTCCGTTACAGAAGACTCCTCCCCCCCCCACAGCAGCTCTGCCGC
GGCATCAGGTGGTGGCGCAGAGCGTGACGATAAGCGTGAGGAGCCCCCTC
CCCTGGAAAGGCCAATG
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