mRNA_Ecto-sp13_S_contig745.18634.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig745.18634.1
Unique NamemRNA_Ecto-sp13_S_contig745.18634.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig745.18634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig745contigEcto-sp13_S_contig745:14518..17066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size261
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_010650.1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464014.265411-CDS-Ecto-sp13_S_contig745:14517..145891681464014.265411-CDS-Ecto-sp13_S_contig745:14517..14589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig745 14518..14589 -
1681464014.2754815-CDS-Ecto-sp13_S_contig745:14845..149701681464014.2754815-CDS-Ecto-sp13_S_contig745:14845..14970Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig745 14846..14970 -
1681464014.284738-CDS-Ecto-sp13_S_contig745:17002..170571681464014.284738-CDS-Ecto-sp13_S_contig745:17002..17057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig745 17003..17057 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464014.2937367-UTR-Ecto-sp13_S_contig745:17057..170661681464014.2937367-UTR-Ecto-sp13_S_contig745:17057..17066Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig745 17058..17066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig745.18634.1prot_Ecto-sp13_S_contig745.18634.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig745 14518..17057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig745.18634.1

>prot_Ecto-sp13_S_contig745.18634.1 ID=prot_Ecto-sp13_S_contig745.18634.1|Name=mRNA_Ecto-sp13_S_contig745.18634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MRFVAVLLLGPLSAVTAQTCRDGTPGTQRGNSCCNVNCNACNALNNCDAQ
LGASECCSDQVLEDNNLCTEADAGPCVLEPFGE*
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mRNA from alignment at Ecto-sp13_S_contig745:14518..17066-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig745.18634.1 ID=mRNA_Ecto-sp13_S_contig745.18634.1|Name=mRNA_Ecto-sp13_S_contig745.18634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig745:14518..17066- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTCGGCATGCGCTTTGTCGCAGTACTCCTGTTGGGTCCACTGTCGGC
TGTCACCGCGCAGAGTGAGTGAACGGCGTGTCGGTACTGTCGGTATAATC
TACGGTACCAACTTTTGTAATTCAATTTACTCTTTGGATTCATTGCTAAT
CTATCTACAGCTACACGACTATTTTCTTCGATAGCGATGGATTTGTTGTT
GTCAAAATGATATAAAAAAAATAAATGTGGTGGATGCACATGACTGAAGT
CTATATTCAAGTCGCTTAGAAGAGCAGCGAAGTTCTTTCTAGAAGTGTCG
TTTGACAACTTGCAAGTTGTCGACACTCACTGCGCCACATTCCCTGTGAA
GGCCACATTCCACATAAACTCAAGAATGTATCCGCCTGTAGTCTACAGAT
GCTTTTTTTCTCAGCTCCAACTGGCATCACTGACAACTCAGTGTTAGACT
TTCACAAACTCAACGTAGGCCAAGTCTCCAGTTGGTTTCAATCCACTTAC
TGAAAAGATTTCACCACATCGCTTTCGACTGAGGCTATATCTCGAACGGG
TAGGCTTTCTGTGAGGTTTGTTTACTTTCTAGAACTACAACATAGATCGT
GTCGGTGCGATGTTTGCCTGTTGCTCGTTGCCGTACGCATTGAAAAATGC
GAGTTCACGGGCAAGCGAACCCCCGAATCGAAGTTCGATCTCTATGGTAT
TGAAGTATGCTGCAGTAGATTCTGCGCTATGCTTACGGCGCTCGAGCGAA
AAGATCCTTCCCACTACTCATACAAACTCCGCTTTTTTTGTGATCTTGTG
CGTGCCATCGTTGAAGGTAGCCGCCGGTTGTCGCTGGACAGCTAGCTGCA
GATGTGCGTGGAGCCTCATCGCTTGTGAACTAAGAAGAATTTTGTGTAAA
CCGGGTAGTAGGCCGAAGCTTGTAGGTTTGTAGAGAAGGCAGCTCGGCCG
GTGAGGGCCGAGATGGAAAAGTCTTGTATTGAAGGGAACAGGGAACAACA
GAGAGCAGCACTTTTATATAGAGTCCGAGGAACCGAGGAGCGCGTCACCA
CACCTATCCATAAGGAATTTCTGATCACTCATCAAATCTCCGGAGAAACC
AAGTGGAAACTCCCCGTTCCTCCGCAATGTACCAACTGCAATCTCCGTAG
ATCCATGTCCCGTATTCCACTATCTTGCTATGTAGACTATACCTGTCCAG
GAAGAAGGTGTCTGCAGCAAGCGATAAAACATTCGAATACGACGGAACCA
ATCTTCCTTACCGGGGCTCCGAAGAACAAACGTGGCATTTCAATGACTTT
TCGGCTGCGTAATTGTTGATGTGCTGAAGTAATTATTGCCTACTTTTGTA
GGATGTAAGCCCATCGTCACTCTACCCCTTCTGTAACAAAAAACAGTGAG
CACTCTCGGCTGCGTCCGCCTCCTCTGTCTCACGCCGATTGATGACAGTA
CTCTTCGCGCACGCAGTCGGGCTTACTCGGGAGTAAATCACAATGAGCGA
TTCCCACTTTGCGAGGTCCACTGAACGGGACACCCGGTCCAGACATTATT
CTACCTGCTCAGTAATGATGTCTGGATGCAAAGAATGTCAAACTTTGTGC
GGTGCGCATGTTTGCTGCTGTCTGCTGTGGGGTTGGGTGTTGGCGCATGG
GGCTGCGCTCAGTCTGAGCTGCAGTCGGGGGTTAACCAAAATTTGCAAAG
AATCTTGAGGCACGCACTCGGAAGAAAATGGAACATCAAACGATCGTTGC
GACTTTTCGTCCGGCATCAAATCTACGACGGGAGGGAAAGAATGCTCGAA
GGACTGGCCCGACCCACTCTTCTCTCGCCCCCTGATTGTCTCGACAGCTC
GAATCAAATAGTTCGTATTACACAACCTACGTACCCCGTCCGTATCTACC
AAGAATTTCCACGTCAAGCGACGTTTTGTCCTTTTGTTTGGATGTCGAGC
GAGGTGCGTTCATGAATTTGGTCAACAATTCGATCAAGACAAATTGTTCA
AGAAGTGAAATGTTTTTCGATTTTAGAGCCCGCGTCAGTCATATGGCTTT
CGAAGTTTTTTCCTCCTCAAAACACAAGCTTCACGTACCCGCGCAGCTTG
TCGAGATGGGACTCCCGGGACGCAAAGGGGAAACAGTTGCTGCAACGTGA
ACTGCAATGCTTGTAATGCCCTGAACAACTGCGACGCTCAACTCGGCGCG
TCCGAGTGCTGCTCCGACCAGGTGAGTGAGTGAGTGAGTGAGCGTTCGAC
GCAAACTCAGCACTTGTTAATTTCCGGATTCCGATAGGTGAAACCGTTGA
GTTCTTTTCACAGCCCGCCGATGTGCGGGGGGCATAAATCACCTGGAGAG
AATAGCAAGTTGTGTTGACGGTGCGCGTGCATGTGTGCTCGCGTGGCGTG
CAAAGCGCGGTTGGTACGTAGATTTCAATTGACTACACCTAAGTATTTTT
CTAGCTTTCCCTTGGATGGTTCGGCAGGTGCTTGAAGACAACAACCTCTG
CACCGAAGCTGATGCAGGACCGTGTGTCCTGGAACCCTTCGGTGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig745:14518..17066-

>mRNA_Ecto-sp13_S_contig745.18634.1 ID=mRNA_Ecto-sp13_S_contig745.18634.1|Name=mRNA_Ecto-sp13_S_contig745.18634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig745:14518..17066- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCTTTGTCGCAGTACTCCTGTTGGGTCCACTGTCGGCTGTCACCGC
GCAGACTTGTCGAGATGGGACTCCCGGGACGCAAAGGGGAAACAGTTGCT
GCAACGTGAACTGCAATGCTTGTAATGCCCTGAACAACTGCGACGCTCAA
CTCGGCGCGTCCGAGTGCTGCTCCGACCAGGTGCTTGAAGACAACAACCT
CTGCACCGAAGCTGATGCAGGACCGTGTGTCCTGGAACCCTTCGGTGAGT
GA
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