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Homology
BLAST of mRNA_Ecto-sp13_S_contig7431.18613.1 vs. uniprot
Match: A0A6H5J7K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K4_9PHAE) HSP 1 Score: 791 bits (2043), Expect = 9.310e-282 Identity = 454/536 (84.70%), Postives = 472/536 (88.06%), Query Frame = 1
Query: 1 SEDVCLLNFCVFMLWDYLPTVWLLLVMEGTTGEHVGTSVVKAVHPANYGDDLRNLPDYGVFREIKAAAARDAARAERAWSGASTGQCVSYSSWLSTEQSPRTS-GLRDPNHFKNVPAAPYNAQGGGGSYPSSVHSSRENLSQSGGXXXXXXXXXXXXXXXXXXXXXAATAGQVSSVGSSLGGMAFVTSHSSCSLESHDRQNRRGPFSWLLGWRRSATAEAXXXXXXXRGVSDGRXXXXXXXXXXXXXXXXXXSPFLWQASMNCGSSSYNQGSSXXXXXXXXXXXQRENANETSKASNGGGMGATVSRWWRRVLEGKREGSAPEQAGEAASLWQSSVADAPDNWYPGFGELSRAEVTYSLRGYRGPATRQERAISDDSSLGGGXXXXXIGGVWEGYRSETGPVRQTRRREEASVETAEHEGRQILAPPRREAVVREDYGSSGGDGGLGRPARINDRPGQTVDVGDGTFLKGRGGHDLRYPGQGEHGRSHRGGEELENRQGGTVRTEVARGGAQVVGGGRAWGERTGEGMYRPYHVPG 1605
SED+CLLNF VFMLWDY+PTVWLLLVMEGTTGEHVGTSVVKAVHPANYGDDLRNLPDYGVFREIKAAAARDAARAERAWSGASTGQ +S SSWLSTEQSPRT+ GLRDPNHFKNVPAAPYNAQGGGGSYPSSVHSSRENLSQSG XXXXXXXXXXXXXXXXXXXXAATAGQVSSVGSSLGGMAFV S SSCSLESHDRQNRRGPFSWLLGWRRSATAEA RGVSDGR XXXXXXXXXXSPFLWQASM+CGSSSY +GSS +REN NE SK S+GGGMG TVSRWWRRVLEG+REGSAP+QA E ASLWQSS ADAPD W PGFGELSRAEV YSLRGYRGPATRQERAISDDSSLGGG +GGVW+GYRSETGPVRQTRRREEASV+TAEH+GRQILAP RRE VVR+DYGSSG DGGLG+PAR +DRP QTVDVGDGTF +GRGGHD RYPG EHGRSHRGGEELEN QGGTVRTEVARGGAQVV GG A GERTGE MYRPYHVPG
Sbjct: 190 SEDICLLNFSVFMLWDYVPTVWLLLVMEGTTGEHVGTSVVKAVHPANYGDDLRNLPDYGVFREIKAAAARDAARAERAWSGASTGQYISSSSWLSTEQSPRTTCGLRDPNHFKNVPAAPYNAQGGGGSYPSSVHSSRENLSQSGVGXXXXXXXXXXXXXXXXXXXXAATAGQVSSVGSSLGGMAFVASPSSCSLESHDRQNRRGPFSWLLGWRRSATAEAEAGSGAVRGVSDGRARGHHRSGXXXXXXXXXXSPFLWQASMDCGSSSYIKGSSSS---------RRENENEMSKTSDGGGMGKTVSRWWRRVLEGRREGSAPDQAEETASLWQSSDADAPDKWSPGFGELSRAEVMYSLRGYRGPATRQERAISDDSSLGGGGAGG-MGGVWQGYRSETGPVRQTRRREEASVKTAEHKGRQILAPLRRETVVRQDYGSSGVDGGLGKPARSDDRPAQTVDVGDGTFSEGRGGHDPRYPG--EHGRSHRGGEELENWQGGTVRTEVARGGAQVVRGGLAGGERTGERMYRPYHVPG 713
BLAST of mRNA_Ecto-sp13_S_contig7431.18613.1 vs. uniprot
Match: D7FSN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN3_ECTSI) HSP 1 Score: 226 bits (575), Expect = 2.980e-65 Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 1
Query: 1 SEDVCLLNFCVFMLWDYLPTVWLLLVMEGTTGEHVGTSVVKAVHPANYGDDLRNLPDYGVFREIKAAAARDAARAERAWSGASTGQCVSYSSWLSTEQSPRT-SGLRDPNHFKNVP 345
SEDVCLLNFCVFMLWDY+PTVWLLLVMEGTTG+HVGTSVVKAVHPANYGDDLRNLPDYGVFREIKAAAARDAARAERAWSGASTGQ SYSSWLSTEQSPRT SGLRDPNHFKNVP
Sbjct: 245 SEDVCLLNFCVFMLWDYIPTVWLLLVMEGTTGDHVGTSVVKAVHPANYGDDLRNLPDYGVFREIKAAAARDAARAERAWSGASTGQYFSYSSWLSTEQSPRTTSGLRDPNHFKNVP 360
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 0 |
| Seed ortholog score | 225.7 |
| Seed ortholog evalue | 5.1e-56 |
| Seed eggNOG ortholog | 2880.D7FSN3 |
| Model size | 1608 |
| Hectar predicted targeting category | signal peptide |
| Exons | 5 |
| EggNOG OGs | 2BYFE@1,2S2HC@2759 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-07_002510.1 |
| Cds size | 1608 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464012.1127486-CDS-Ecto-sp13_S_contig7431:2980..3383 | 1681464012.1127486-CDS-Ecto-sp13_S_contig7431:2980..3383 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7431 2981..3383 - |
| 1681464012.1260502-CDS-Ecto-sp13_S_contig7431:3743..4602 | 1681464012.1260502-CDS-Ecto-sp13_S_contig7431:3743..4602 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7431 3744..4602 - |
| 1681464012.140993-CDS-Ecto-sp13_S_contig7431:5720..5836 | 1681464012.140993-CDS-Ecto-sp13_S_contig7431:5720..5836 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7431 5721..5836 - |
| 1681464012.1522217-CDS-Ecto-sp13_S_contig7431:6164..6271 | 1681464012.1522217-CDS-Ecto-sp13_S_contig7431:6164..6271 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7431 6165..6271 - |
| 1681464012.163331-CDS-Ecto-sp13_S_contig7431:7385..7508 | 1681464012.163331-CDS-Ecto-sp13_S_contig7431:7385..7508 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7431 7386..7508 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7431.18613.1 >prot_Ecto-sp13_S_contig7431.18613.1 ID=prot_Ecto-sp13_S_contig7431.18613.1|Name=mRNA_Ecto-sp13_S_contig7431.18613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=536bp
SEDVCLLNFCVFMLWDYLPTVWLLLVMEGTTGEHVGTSVVKAVHPANYGD DLRNLPDYGVFREIKAAAARDAARAERAWSGASTGQCVSYSSWLSTEQSP RTSGLRDPNHFKNVPAAPYNAQGGGGSYPSSVHSSRENLSQSGGGGGGGG SSSNGYGFYGYGSGSAATAGQVSSVGSSLGGMAFVTSHSSCSLESHDRQN RRGPFSWLLGWRRSATAEAEAGSGAARGVSDGRARGHHRSGSGSRGGGGG GSPFLWQASMNCGSSSYNQGSSSSYNKGSSSSSQRENANETSKASNGGGM GATVSRWWRRVLEGKREGSAPEQAGEAASLWQSSVADAPDNWYPGFGELS RAEVTYSLRGYRGPATRQERAISDDSSLGGGGGAGGIGGVWEGYRSETGP VRQTRRREEASVETAEHEGRQILAPPRREAVVREDYGSSGGDGGLGRPAR INDRPGQTVDVGDGTFLKGRGGHDLRYPGQGEHGRSHRGGEELENRQGGT VRTEVARGGAQVVGGGRAWGERTGEGMYRPYHVPG* back to topmRNA from alignment at Ecto-sp13_S_contig7431:2981..7508- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig7431.18613.1 ID=mRNA_Ecto-sp13_S_contig7431.18613.1|Name=mRNA_Ecto-sp13_S_contig7431.18613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7431:2981..7508- (Ectocarpus species13 EcNAP12_S_4_19m) TCCGAAGACGTTTGCCTGCTGAACTTCTGTGTGTTCATGCTGTGGGACTA
CCTGCCGACGGTCTGGCTGCTGCTGGTCATGGAGGGCACGACTGGAGAGC
ACGTCGGCACGTCCGTGGTAAAGGTGTGGATCGCATTCACACCTGTGTCC
TCCGGGTTGCTAGATGCTCGCACGGGTTTCCATTTTCGGTACTACTGTGT
GTCCGCAGTCGTTGTCGTTGACGCTGGTCTTGTTGATCGGCACACGCGTC
GGACCTCCACATACCCTTTTCGTCGCGGAGGTAGTCATGCTTTGACAATG
GGTCCGGGGGGTGTGGTATCTCATGCAATCTACGCCGGTAGCTATTGCGT
GACAGATTTTCAGGCGATCCATAGGCTCGAGTTCTCATGTTTTCTTGGAC
GCGTTTTGTTGAGGGTCTTGTTGATCGGCACACGCGTCGGACCTCCACAT
ACCCTTTTCGTCGCGGAGGTAGTCATGCTTTGACAATGGGTCCGGGGGGT
GTGGTATCTCATGCAATCTACGCCGGTAGCTTTTCAGGCGATCCATAGGC
TCGAGTTCTCATGTTTTCTTGGACGCGTTTTGTTGAGATTTCCTGTATCG
CCCCAAAACCGGACCTGATATGCTACCGATACCCCGTCCGCACCGTGATT
CCCATGTGCGAAACGCCTCACTGCCTTACACCGACGTGTTTGCGGACCTA
ATAATGGCCATTTCGCCGGCAGGCCGTGTTGGGATGTAGCCCTTGTGATA
GCAATGGCCACTTCGTAGCAAGGAACAGCGTGCAGAGGCTCACAGAGTGA
CTGTAAGGTACACTTGTGCTGTAGACCAGCAAAAATGGTTTGAATAATCG
CTTAGTCGGTGAAAAACCTAGAAGAGAGAAAGGGGAAGAAGTAGAATGAG
AAGGAGTAGGAGTGGGCGAGTGGGGGCGAGTACTACGGGGGTGAGCCATT
CATCTCCATCACGGAAAGGAAACACATACGGGCTATTGCAGTGTACCGAT
CACGGTAATACATGATCAATCCGACCTATGTCAACGTTACTAGAATATCC
AATAGGACAATGGTCCGATGAACCATACTTCCATGGTTCATTGTTTAACC
CGTGGGTGTTGTACAATGATCCGACTACTGAATCAACATACCGAAGACTA
TTCCGGTAATACTCCTTAGGTGAATACCTACGTACTGTTGTTTACAGCAG
GGCAAACTCTAATGACTGACATTGAGTATTCCAACAGGCCGTTCATCCCG
CAAACTACGGGGACGACCTGCGGAACCTCCCGGACTACGGGGTGTTCCGC
GAGATCAAGGCGGCGGCTGCACGGGATGCCGCTAGGGCGGAAAGGTGCGT
GTACGCGGTCCAGCCCCCCGCATGTCCTTGAGCGTGGCATGTTTTCCCAA
AGCAGGTGTCACTGAGCCGGGAAGTCCCCCCATGCAATCCGCAGCTTATA
TATGGGGCAGCACGTGTACCTGGGAATTGTGACTATCTGCTTGCAAACAT
CTTTTCATCGACCGTGCTCGAGGCATTGAGACTTGGCTCCGACCTCTTCA
TTCGCGCCTAGGATGTCACTTTACCGTCGTTCCGGCCCTTTCTGGTTTGT
TTTATGTCACACGCCCTATGAAACGGACCCCCCCCCCCGTCCTACTTTCC
TCACGGTCTTCGTGCATCGCAGGGCATGGTCTGGGGCGTCCACCGGACAA
TGTGTCTCGTACTCCTCTTGGCTTTCTACTGAGCAATCTCCGAGAACCAG
CGGTTTGAGAGACCCCAACCACTTCAAGAATGTTCCGGGTATGATAAAGG
TGTCGCGGAATGGAATTGTCTCACCACCGCATCACTGACCAGGTTTCACT
TGCTACTTCGTGTAGAATTGTTCTATCGTGCAGAGAGTCCAAAGTGATGT
GCTCGATGGTCGTGTCCCTAGTTAGTAGGGGCGCTCAAGTTGGGCATGCC
TAATGATTTTATGCATTCAAGGTGATTCAGAGTGAACGCCATTTGGGGTT
AAATTGCGAACGTTCACGGTTTGTTTCTCGAGTAAGAGCCTCATTTTGCA
CAATATCATCTTCCTCGCTTACAATGGAAGATCGACTTCGTCTCCTTTCT
TTCGTTTGTCGCCAATTTTCCGGATCCCAGAGTTACGGAAGTCATCTGAA
CGGACCAAGGACATTCGAGGAAAGAAAACTGATAAAAAAGCCCCGGTCTT
GTCTAAGTTGTCGGGACCCTTGTGTACACTCTCCGAACTTCGAGACATTT
CATGAAAGGACCATCGTGACCGTTCCCTTTTCGGCGATCAGTTGATTTTT
CTCCGGCGTTGCCCCCCGTCTACACGGTTTACCTATGCATTCGACCTTCT
CCCAGGATCTGTCAAGGAAGAATTTCGAAGTATTTGATGAATTCGACAAA
AAACTCCGGACGATGTCAGCAGTCGAACATGCACGTCAGTGGTATCGATC
AAACAGTTCAATCTTACAGGGACAGCAACTGTAGCAGGTTGAGAGGTAGC
CATTTGTGTTTCGTGGGTCGTCGTAGTTCTCATCCTCAAGTTAATTCAAA
ACCTCAAGTTGGTGTTGGAGTCTGGTGTCGTCTTGGCTCTGGTAGGAGCG
CGGAACCTCTCCGTCTTCGCGCGTCTATTGGCGATGGCGGCAACTGTTCT
TGGTTCTGCATCAGGTTCTTCGTTTTTCTGGCGTGCCGTTGATTCCTCTG
CGAGTTCTGGGTACGTTGATGCAAGAGACTGGTTTGATTGACTGTTGAGG
CCGTTCGGGGCTTTCTTTGGCCTAAACAGTTTACTCTTCTTCCATTTCTG
CCAAGCGTGACAACATTCAAGCCTACTCTGATGACTTTTTCACTGATTTT
GTTTGCTTGTTCTGCTGCTTCTCCCTTTGGTATCAATTCCTCACGATGCT
TTGCAGCCGCACCATACAACGCTCAGGGCGGCGGTGGCTCCTACCCCAGC
AGCGTGCACAGCAGCAGGGAAAACCTGTCCCAGAGCGGCGGCGGCGGCGG
GGGCGGCGGCAGCAGCAGTAACGGGTATGGCTTCTATGGGTACGGCAGTG
GGAGTGCCGCCACCGCCGGCCAGGTCTCTAGTGTCGGCTCGAGCTTGGGT
GGCATGGCTTTCGTAACCTCCCACTCCTCTTGCTCCCTCGAGTCGCACGA
TCGCCAGAATCGTAGAGGTCCGTTCAGCTGGTTGTTGGGATGGAGGAGGA
GCGCCACCGCTGAGGCAGAGGCTGGGAGCGGGGCGGCGAGAGGTGTGAGT
GACGGCAGGGCGAGAGGGCATCATCGTAGTGGTAGCGGCAGCCGTGGCGG
CGGCGGTGGCGGTAGTCCGTTTCTTTGGCAAGCGAGCATGAATTGCGGCA
GCAGCAGCTACAACCAGGGCAGCAGCAGCAGCTACAACAAGGGCAGCAGC
AGCAGCAGCCAACGCGAGAATGCGAACGAGACGAGCAAAGCTAGCAACGG
CGGCGGGATGGGCGCGACGGTCTCGCGGTGGTGGAGACGCGTGCTTGAGG
GGAAGAGGGAAGGAAGCGCCCCAGAACAGGCAGGAGAAGCAGCTTCGTTG
TGGCAGTCCTCGGTTGCCGACGCCCCGGACAATTGGTACCCGGGCTTCGG
CGAGCTCTCTCGAGCAGAAGTCACATACTCGTTGCGGGGATACCGTGGTC
CAGCTACGAGACAAGAACGGGCGATCAGCGACGACAGCTCACTGGGAGGA
GGCGGCGGCGCAGGAGGAATAGGAGGTGTATGGGAGGGGTATCGAAGCGA
GACGGGTCCAGTCAGGTCAGTCAGGGATATGTGTTCATGTCGGGGGTCTG
AGATATTCAATTATCCACCTGCTGTCGTAGCGGGAACCAGGAAGTCCACG
TTTTCGAGGTCTCTCGTCGGCATGGCGTTGGGGCTGTTGATTCCATTTGT
CTCAAGAAAGGGGTGCCGTTTCTTATTTCGTTTCGCATAGGGCCGTTTGG
ACAACATGGCACGGAGGCGTATTCATCTAGCTGTGTTTCGGAGGGAAGAC
TTGGACGCCATGGACGATTCCACCAGATGTTGATTCCTACGCGTTCAACC
CACCGTTCCTGTCGGCCCGCGTTTTTTTACTGCTCCCCGCTGTCTGATTG
GTGTCCTTTGTGCGGTTAAAAAAAGGCAAACCCGCAGGCGGGAGGAGGCG
AGCGTCGAAACGGCCGAACATGAAGGAAGACAGATCCTTGCACCGCCCCG
GCGCGAGGCGGTCGTTCGCGAGGACTATGGCTCCAGCGGCGGCGATGGTG
GCCTCGGGAGGCCCGCACGTATCAATGATCGTCCCGGCCAAACGGTCGAC
GTCGGCGACGGCACCTTCTTGAAGGGGAGAGGGGGGCATGACCTAAGGTA
CCCCGGACAAGGTGAACACGGCCGGAGCCACAGGGGTGGCGAAGAGCTTG
AGAATCGGCAAGGGGGTACCGTTAGGACGGAAGTAGCTAGGGGGGGCGCA
CAGGTCGTCGGAGGGGGGCGTGCTTGGGGAGAACGAACCGGCGAGGGTAT
GTATAGGCCATACCACGTTCCCGGTTAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig7431:2981..7508- >mRNA_Ecto-sp13_S_contig7431.18613.1 ID=mRNA_Ecto-sp13_S_contig7431.18613.1|Name=mRNA_Ecto-sp13_S_contig7431.18613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1608bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7431:2981..7508- (Ectocarpus species13 EcNAP12_S_4_19m) TCCGAAGACGTTTGCCTGCTGAACTTCTGTGTGTTCATGCTGTGGGACTA CCTGCCGACGGTCTGGCTGCTGCTGGTCATGGAGGGCACGACTGGAGAGC ACGTCGGCACGTCCGTGGTAAAGGCCGTTCATCCCGCAAACTACGGGGAC GACCTGCGGAACCTCCCGGACTACGGGGTGTTCCGCGAGATCAAGGCGGC GGCTGCACGGGATGCCGCTAGGGCGGAAAGGGCATGGTCTGGGGCGTCCA CCGGACAATGTGTCTCGTACTCCTCTTGGCTTTCTACTGAGCAATCTCCG AGAACCAGCGGTTTGAGAGACCCCAACCACTTCAAGAATGTTCCGGCCGC ACCATACAACGCTCAGGGCGGCGGTGGCTCCTACCCCAGCAGCGTGCACA GCAGCAGGGAAAACCTGTCCCAGAGCGGCGGCGGCGGCGGGGGCGGCGGC AGCAGCAGTAACGGGTATGGCTTCTATGGGTACGGCAGTGGGAGTGCCGC CACCGCCGGCCAGGTCTCTAGTGTCGGCTCGAGCTTGGGTGGCATGGCTT TCGTAACCTCCCACTCCTCTTGCTCCCTCGAGTCGCACGATCGCCAGAAT CGTAGAGGTCCGTTCAGCTGGTTGTTGGGATGGAGGAGGAGCGCCACCGC TGAGGCAGAGGCTGGGAGCGGGGCGGCGAGAGGTGTGAGTGACGGCAGGG CGAGAGGGCATCATCGTAGTGGTAGCGGCAGCCGTGGCGGCGGCGGTGGC GGTAGTCCGTTTCTTTGGCAAGCGAGCATGAATTGCGGCAGCAGCAGCTA CAACCAGGGCAGCAGCAGCAGCTACAACAAGGGCAGCAGCAGCAGCAGCC AACGCGAGAATGCGAACGAGACGAGCAAAGCTAGCAACGGCGGCGGGATG GGCGCGACGGTCTCGCGGTGGTGGAGACGCGTGCTTGAGGGGAAGAGGGA AGGAAGCGCCCCAGAACAGGCAGGAGAAGCAGCTTCGTTGTGGCAGTCCT CGGTTGCCGACGCCCCGGACAATTGGTACCCGGGCTTCGGCGAGCTCTCT CGAGCAGAAGTCACATACTCGTTGCGGGGATACCGTGGTCCAGCTACGAG ACAAGAACGGGCGATCAGCGACGACAGCTCACTGGGAGGAGGCGGCGGCG CAGGAGGAATAGGAGGTGTATGGGAGGGGTATCGAAGCGAGACGGGTCCA GTCAGGCAAACCCGCAGGCGGGAGGAGGCGAGCGTCGAAACGGCCGAACA TGAAGGAAGACAGATCCTTGCACCGCCCCGGCGCGAGGCGGTCGTTCGCG AGGACTATGGCTCCAGCGGCGGCGATGGTGGCCTCGGGAGGCCCGCACGT ATCAATGATCGTCCCGGCCAAACGGTCGACGTCGGCGACGGCACCTTCTT GAAGGGGAGAGGGGGGCATGACCTAAGGTACCCCGGACAAGGTGAACACG GCCGGAGCCACAGGGGTGGCGAAGAGCTTGAGAATCGGCAAGGGGGTACC GTTAGGACGGAAGTAGCTAGGGGGGGCGCACAGGTCGTCGGAGGGGGGCG TGCTTGGGGAGAACGAACCGGCGAGGGTATGTATAGGCCATACCACGTTC CCGGTTAG back to top
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