mRNA_Ecto-sp13_S_contig7422.18602.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7422.18602.1
Unique NamemRNA_Ecto-sp13_S_contig7422.18602.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7422.18602.1 vs. uniprot
Match: D8LFH4_ECTSI (Short-chain dehydrogenase/reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFH4_ECTSI)

HSP 1 Score: 390 bits (1001), Expect = 1.240e-133
Identity = 199/208 (95.67%), Postives = 203/208 (97.60%), Query Frame = 1 
Query:    1 VTLGQRGCTVYVTGRSVGGNTTDKARQREIGGSLEETAAEIEAAGGKGIPVACDHAKDKQVKALFERVESEQGRLDILVNNAFALGPGDQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKSVKDRGGKPGLIACVSSFGGLTYSFNVAYGVGKAGVDRLAKDMAVELEEEKVAVVSMYPGIVKTEKMKSLMTKSPAEFEAN 624
            VTLGQRGCTVYVTGRSVGGNTTDK    EIGGSLEETAAEIEAAGGKGIPVACDHAKD+QVKALFERVESEQGRLDILVNNAFALGPGDQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKSVKDRGGKPGLIACVSSFGGL YSFNVAYGVGKAGVDRLAKDMA+ELEEEKVAVVS+YPGIVKTEKMKSLMTK+PAEFEAN
Sbjct:  107 VTLGQRGCTVYVTGRSVGGNTTDK----EIGGSLEETAAEIEAAGGKGIPVACDHAKDEQVKALFERVESEQGRLDILVNNAFALGPGDQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKSVKDRGGKPGLIACVSSFGGLAYSFNVAYGVGKAGVDRLAKDMAIELEEEKVAVVSVYPGIVKTEKMKSLMTKNPAEFEAN 310
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7422.18602.1 vs. uniprot
Match: D8LFI0_ECTSI (Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI0_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 4.300e-96
Identity = 144/152 (94.74%), Postives = 148/152 (97.37%), Query Frame = 1 
Query:    1 VTLGQRGCTVYVTGRSVGGNTTDKARQREIGGSLEETAAEIEAAGGKGIPVACDHAKDKQVKALFERVESEQGRLDILVNNAFALGPGDQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKSVKDRGGKPGLIACVSSFGGLTYSF 456
            VTLGQRGCTVYVTGRSVGGNTTDK    EIGGSLEETAAEIEAAGGKGIPVACDHAKD+QVKALFE+VESEQGRLDILVNNAFALGPGDQLQAKFWTQGADAWDSLITVGLRSHY+ASCFAAPLMIKSVKDRGGKPGLIACVSSFGGLTYS+
Sbjct:   37 VTLGQRGCTVYVTGRSVGGNTTDK----EIGGSLEETAAEIEAAGGKGIPVACDHAKDEQVKALFEKVESEQGRLDILVNNAFALGPGDQLQAKFWTQGADAWDSLITVGLRSHYVASCFAAPLMIKSVKDRGGKPGLIACVSSFGGLTYSW 184
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7422.18602.1 vs. uniprot
Match: A0A7S3USF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USF7_HETAK)

HSP 1 Score: 206 bits (525), Expect = 2.730e-62
Identity = 109/208 (52.40%), Postives = 145/208 (69.71%), Query Frame = 1 
Query:    1 VTLGQRGCTVYVTGRSVGGNTTDKARQREIGGSLEETAAEIEAAGGKGIPVACDHAKDKQVKALFERVESEQGRLDILVNNAFALGPGDQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKS---VKDRGGKPG-------LIACVSSFGGLTYSFNVAYGVGKAGVDRLAKDMAVELEEEKVAVVSMYPGIVKTEKMKSLM 594
            + L +RG TVY+TGRS+            +GG+L +T AEI+AAGGK IP+ CDHA D+Q +A+FE+V+S +GRLDILVNNAFA+     L   FW QGA+ WD+  TVGLRSHY+ SC A P+M+++   V+   G  G       LI  +SSFGGL+Y+FNVAYGVGKAGVDRL KDM VEL++  ++ VS++PG+V TE+   +M
Sbjct:   50 IALAERGATVYITGRSL------DFPADPLGGTLRQTQAEIQAAGGKCIPIKCDHANDEQTRAVFEQVQSREGRLDILVNNAFAIPKQKDLFTNFWEQGAEIWDACHTVGLRSHYLCSCHAVPVMLQNPPLVQGARGDFGGGRKTNPLIVGISSFGGLSYTFNVAYGVGKAGVDRLIKDMDVELKQHGISTVSLWPGVVLTEQTLKMM 251
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7422.18602.1 vs. uniprot
Match: A0A8J9X4G2_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X4G2_PHATR)

HSP 1 Score: 193 bits (490), Expect = 2.300e-57
Identity = 108/215 (50.23%), Postives = 142/215 (66.05%), Query Frame = 1 
Query:    7 LGQRGCTVYVTGRSVGGNTTDK-------ARQREIGG--SLEETAAEIEAAGGKGIPVACDHAKDKQVKALFERVESEQGRLDILVNNAFALGPG--DQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKSVKD--RGGKPGLIACVSSFGGLTYSFNVAYGVGKAGVDRLAKDMAVELEEEKVAVVSMYPGIVKTEKMKSLMTKSPAE 612
            LG++G  VY+TG S   N++         +  +E GG  ++E+TA EI  AGG G+ V C+HA D +VK L +R+E + GRLDIL+NNAF L  G  + L  KFW QG + WD+L TVGLRSH++AS +A PL+  + K+  R      +  VSSFGGLTY+FNV YGVGKAGVDRLAKDMAVEL  E + VVS +PG+V TE+ +  + K   E
Sbjct:   19 LGKQGAIVYITGTSTSDNSSSLNAATGPYSATKESGGPGTIEQTAQEIMNAGGIGVAVLCNHAVDSEVKHLMDRIERDHGRLDILINNAFRLPQGGVEMLYKKFWEQGPEIWDTLHTVGLRSHFVASVYAMPLLQAAKKNPQRNLPRPFVGMVSSFGGLTYTFNVPYGVGKAGVDRLAKDMAVELTPEDICVVSFWPGVVDTERTQESVKKGDWE 233
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7422.18602.1 vs. uniprot
Match: A0A6U5IRZ3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5IRZ3_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.500e-55
Identity = 107/222 (48.20%), Postives = 142/222 (63.96%), Query Frame = 1 
Query:    7 LGQRGCTVYVTGRSVGGNTTDKARQREIG----------------------GSLEETAAEIEAAGGKGIPVACDHAKDKQVKALFERVESEQGRLDILVNNAFALGPG--DQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKSVKD--RGGKPGLIACVSSFGGLTYSFNVAYGVGKAGVDRLAKDMAVELEEEKVAVVSMYPGIVKTEKMKSLM 594
            LG+ G TVYVTG S   +  D++R  + G                      G++++TA E+ AAGG GIPV C+HA D+QVK LFE+VE EQGRLDIL+NN F + PG  D L  KFWT G + +D L  VG+RSHY ++ FA PLM++S K   +  +P  I  +SSFGG +Y+FNV YGV K  VDR+AKDMA+EL  E V V+S YPG+V TE+ + ++
Sbjct:    3 LGKEGATVYVTGTS---SRADESRGNKGGRFGLGSKKIQGKYLTNEDVGGPGTVDDTADEVTAAGGLGIPVLCNHADDEQVKQLFEQVEEEQGRLDILINNVFRVPPGGADSLSGKFWTLGMELFDVLHDVGVRSHYASTVFAMPLMLRSRKTSTKLDRP-FIGMISSFGGNSYTFNVPYGVAKGAVDRMAKDMAIELNNEDVCVLSFYPGLVMTERTERMV 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7422.18602.1 vs. uniprot
Match: A0A2D6BHG0_9DELT (Short-chain dehydrogenase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D6BHG0_9DELT)

HSP 1 Score: 187 bits (474), Expect = 1.540e-55
Identity = 103/204 (50.49%), Postives = 132/204 (64.71%), Query Frame = 1 
Query:    7 LGQRGCTVYVTGRSVGGNTTDKARQREIGGSLEETAAEIEAAGGKGIPVACDHAKDKQVKALFERVESEQGRLDILVNNAFALGPGDQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKSVKDRGGKPGLIACVSSFGGLTYSFNVAYGVGKAGVDRLAKDMAVELEEEKVAVVSMYPGIVKTEKMKSLMTKSPAEFE 618
            LG+ G TVYVTGR     T D + Q  + G++  TA E+   GGKGIPV CDH++D+++KAL ERV SEQGR+DIL+NN F L   +  + KFW      WD L+ VG R HY+AS   AP+M++       K GLI  +SSF G  Y F+V YGVGKA VDR+AKDMAVEL    V  VS++PG+V+TE     +T+S AE E
Sbjct:   28 LGEAGATVYVTGR-----TLDDS-QSYVPGTIGATADEVTRLGGKGIPVRCDHSRDEEIKALIERVHSEQGRIDILINNVFTLPSENVFEGKFWEHSIQLWDDLLQVGCRGHYVASHAVAPIMVEQ------KGGLIVNISSFAGAAYVFSVPYGVGKAAVDRMAKDMAVELGPFGVTCVSLWPGVVRTE----YLTRSHAEGE 215
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7422.18602.1 vs. uniprot
Match: A0A7M7RF35_STRPU (Uncharacterized protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7RF35_STRPU)

HSP 1 Score: 186 bits (471), Expect = 1.180e-54
Identity = 103/195 (52.82%), Postives = 131/195 (67.18%), Query Frame = 1 
Query:    7 LGQRGCTVYVTGRSVGGNTTDKARQREIGGSLEETAAEIEAAGGKGIPVACDHAKDKQVKALFERVESEQ-GRLDILVNNAFALGPG--DQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKSVKDRGGKPGLIACVSSFGGLTYSFNVAYGVGKAGVDRLAKDMAVELEEEKVAVVSMYPGIVKTEKM 582
            LG+ G TVY+TGR++      K +Q  +GGSLEETA EI+  GGK +PV CDH+KD Q+KALFER+E EQ G LD+LVNNA+A        +   FW      WD +  VGLR+HY+ S +AA LM+ +      K GLI  +SS GGL Y FNVAYGVGKA VDRLA D A EL++  VA +S++PG VKTE++
Sbjct:   27 LGEAGATVYITGRTL------KPKQDGVGGSLEETAREIDDRGGKCVPVQCDHSKDDQIKALFERIEKEQNGHLDVLVNNAYAAVSALMGAVNTPFWELPETIWDDINNVGLRNHYICSVYAAKLMVPA------KQGLIVNISSGGGLRYLFNVAYGVGKAAVDRLATDCAHELKKHGVAAISLWPGAVKTEQI 209
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7422.18602.1 vs. uniprot
Match: B3RV93_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RV93_TRIAD)

HSP 1 Score: 184 bits (467), Expect = 3.310e-54
Identity = 102/195 (52.31%), Postives = 132/195 (67.69%), Query Frame = 1 
Query:    1 VTLGQRGCTVYVTGRSVGGNTTDKARQREIGGSLEETAAEIEAAGGKGIPVACDHAKDKQVKALFERVESEQ-GRLDILVNNAFALGPG--DQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKSVKDRGGKPGLIACVSSFGGLTYSFNVAYGVGKAGVDRLAKDMAVELEEEKVAVVSMYPGIVKTE 576
            V LG+ G TVY+TGR++         +  + GSL+ETA EI+AAGGKGIP+ CDH+KD+ +  LF  +  EQ GRLDILVNNA+A      D  Q KFW Q  + WD++  VGLR+HY+A+C A+ LM+        K GLI  +SS GGL Y FNVAYG+GKAGVDR+A D   EL++  VA+VS++PG VKTE
Sbjct:   24 VILGEEGATVYITGRTL-------EAKPGLSGSLKETAQEIDAAGGKGIPIQCDHSKDEDIAKLFATIAKEQDGRLDILVNNAYAGVQAIFDNSQKKFWEQPDNMWDTINGVGLRAHYIATCHASRLMVPR------KQGLIVNISSAGGLRYLFNVAYGIGKAGVDRMAADCGYELKKSNVAMVSLWPGPVKTE 205
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7422.18602.1 vs. uniprot
Match: UPI001BB10D03 (dehydrogenase/reductase SDR family member 1-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB10D03)

HSP 1 Score: 184 bits (468), Expect = 3.340e-54
Identity = 103/193 (53.37%), Postives = 131/193 (67.88%), Query Frame = 1 
Query:    7 LGQRGCTVYVTGRSVGGNTTDKARQREIGGSLEETAAEIEAAGGKGIPVACDHAKDKQVKALFERVESEQ-GRLDILVNNAFALGPG--DQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKSVKDRGGKPGLIACVSSFGGLTYSFNVAYGVGKAGVDRLAKDMAVELEEEKVAVVSMYPGIVKTE 576
            LG+ G TVY+TGR++      K +Q  +GGSLEETA EI+  GGK +PV CDH+KD+QVKA+F+R+E EQ GRLD+LVNNA+A        +   FW      WD +  VGLR+HY+ + +AA LM+ +      K GLI  +SS GGL Y FNVAYGVGKA VDRLA D A EL++  VA VS++PG VKTE
Sbjct:   27 LGEAGATVYITGRTL------KPKQDGVGGSLEETAREIDDRGGKCVPVQCDHSKDEQVKAVFDRIEREQNGRLDVLVNNAYAAVTALMGAVSTPFWELPETIWDDVNNVGLRNHYICTVYAAKLMVPA------KQGLIVNISSGGGLRYLFNVAYGVGKAAVDRLAADCAHELKKHGVAAVSLWPGAVKTE 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7422.18602.1 vs. uniprot
Match: A0A428ZNU2_KIBAR (Short-chain dehydrogenase n=1 Tax=Kibdelosporangium aridum TaxID=2030 RepID=A0A428ZNU2_KIBAR)

HSP 1 Score: 182 bits (462), Expect = 9.580e-54
Identity = 100/191 (52.36%), Postives = 128/191 (67.02%), Query Frame = 1 
Query:    7 LGQRGCTVYVTGRSVGGNTTDKARQREIGGSLEETAAEIEAAGGKGIPVACDHAKDKQVKALFERVESEQGRLDILVNNAFALGP-GDQLQAKFWTQGADAWDSLITVGLRSHYMASCFAAPLMIKSVKDRGGKPGLIACVSSFGGLTYSFNVAYGVGKAGVDRLAKDMAVELEEEKVAVVSMYPGIVKTE 576
            LG  G  VY+TGR+V            + G++ ETAAE+ A GG+GI +ACDH  D QVKA+F R+E+E GRLDILVNN F+       L   FWT   +AWD +I +GLRSHY+AS FA PL++K+  DR   P +I  +SS G  TYS NV YGVGKAGVD+L  DMA EL   ++AVVS++PG+V+TE
Sbjct:   27 LGAAGAVVYLTGRTVTAGP--------LPGTIAETAAEVTALGGQGIAIACDHRDDDQVKAVFARLEAEHGRLDILVNNVFSAADIAPWLNRPFWTLPVEAWDQVIDIGLRSHYVASVFAVPLLMKA--DR---PAVIVNISSPGATTYSHNVVYGVGKAGVDKLTADMAHELRAHEIAVVSVWPGLVRTE 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7422.18602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFH4_ECTSI1.240e-13395.67Short-chain dehydrogenase/reductase n=2 Tax=Ectoca... [more]
D8LFI0_ECTSI4.300e-9694.74Oxidoreductase, short chain dehydrogenase/reductas... [more]
A0A7S3USF7_HETAK2.730e-6252.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J9X4G2_PHATR2.300e-5750.23Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A6U5IRZ3_9STRA1.500e-5548.20Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A2D6BHG0_9DELT1.540e-5550.49Short-chain dehydrogenase n=1 Tax=Deltaproteobacte... [more]
A0A7M7RF35_STRPU1.180e-5452.82Uncharacterized protein n=2 Tax=Strongylocentrotus... [more]
B3RV93_TRIAD3.310e-5452.31Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
UPI001BB10D033.340e-5453.37dehydrogenase/reductase SDR family member 1-like n... [more]
A0A428ZNU2_KIBAR9.580e-5452.36Short-chain dehydrogenase n=1 Tax=Kibdelosporangiu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7422contigEcto-sp13_S_contig7422:735..7513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score391.0
Seed ortholog evalue3.6e-106
Seed eggNOG ortholog2880.D8LFH4
Preferred nameDHRS1
Model size624
KEGG rclassRC00029,RC00117
KEGG koko:K00059,ko:K08141,ko:K11163,ko:K13237
KEGG TC2.A.1.1
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,ko04146,map00061,map00333,map00780,map01040,map01100,map01130,map01212,map04146
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0012505,GO:0015980,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0055114,GO:0071704
Exons6
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
EC1.1.1.100,1.3.1.34
Cds size624
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7422.18602.1prot_Ecto-sp13_S_contig7422.18602.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7422 735..7513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464011.1232088-CDS-Ecto-sp13_S_contig7422:734..8411681464011.1232088-CDS-Ecto-sp13_S_contig7422:734..841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7422 735..841 -
1681464011.1377852-CDS-Ecto-sp13_S_contig7422:1172..12371681464011.1377852-CDS-Ecto-sp13_S_contig7422:1172..1237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7422 1173..1237 -
1681464011.1484535-CDS-Ecto-sp13_S_contig7422:4207..43621681464011.1484535-CDS-Ecto-sp13_S_contig7422:4207..4362Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7422 4208..4362 -
1681464011.1588724-CDS-Ecto-sp13_S_contig7422:4918..50351681464011.1588724-CDS-Ecto-sp13_S_contig7422:4918..5035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7422 4919..5035 -
1681464011.1721702-CDS-Ecto-sp13_S_contig7422:6201..62971681464011.1721702-CDS-Ecto-sp13_S_contig7422:6201..6297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7422 6202..6297 -
1681464011.1834548-CDS-Ecto-sp13_S_contig7422:7429..75131681464011.1834548-CDS-Ecto-sp13_S_contig7422:7429..7513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7422 7430..7513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7422.18602.1

>prot_Ecto-sp13_S_contig7422.18602.1 ID=prot_Ecto-sp13_S_contig7422.18602.1|Name=mRNA_Ecto-sp13_S_contig7422.18602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
VTLGQRGCTVYVTGRSVGGNTTDKARQREIGGSLEETAAEIEAAGGKGIP
VACDHAKDKQVKALFERVESEQGRLDILVNNAFALGPGDQLQAKFWTQGA
DAWDSLITVGLRSHYMASCFAAPLMIKSVKDRGGKPGLIACVSSFGGLTY
SFNVAYGVGKAGVDRLAKDMAVELEEEKVAVVSMYPGIVKTEKMKSLMTK
SPAEFEAN
back to top

mRNA from alignment at Ecto-sp13_S_contig7422:735..7513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7422.18602.1 ID=mRNA_Ecto-sp13_S_contig7422.18602.1|Name=mRNA_Ecto-sp13_S_contig7422.18602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6779bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7422:735..7513- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACACTCGGACAGCGTGGGTGCACGGTCTACGTTACAGGTCGATCTGT
TGGGGGCAATACAACGGACAAGGCAAGGCAAAGGGTGTCCAGAAATATGA
ATATGGGGGGATTTGCATTCGGATCGATTACGTTTTTGAACTTGTGGTAT
CATTTAAGACCAGGTGGCGTAGAAAACGGGTCACATGGGAGCGAGTACCG
TAACGTCAGGGTGTGATGGTTCGATTGTTCATGGCGCAATGGAAAACCCC
ACCTTGTTGTAGTATATACGATGTGCCTTCGCCACTAATGCAGCCCACCT
GCTGATGCACCCCCTAGGTACACATGCTTTGGTTCGACACTACAGTATGT
AGATGGACTCGCGACGTTTGTTCTGAGCGAACTGCTGTAGTTAGTTAGGC
CTCGCACAGCAGATCCATGGTCTAGGAGCACCATCCCTCGCAATAAACTC
CGCGTACCGCTGTCGAGAGCTGCACATCGCATGGCGTCCTACCCCTCACG
CCAGCTGCCCCCAACCGCCGTCCCACCAGTCAAGGCAGCGCACCGTTACC
CCAAGTACCCATGCCCGTGTTTACAGAGCTCCTCTGTGGTATGACTATTT
AATGTAAATTTAGAGTCGGTCAAAATATCGGTGTGGTCAAAATTGCCCGG
CGTTTTTGGTCCAAAAAAGGCACACTCCGTAGCTCTGATGTCGAGGATTC
TTGTATCGAAGGACATGCCAACGGCAGGTTGGCAGGGGGATAAAGGCTCC
CAACGGATCCTCGTGTGTCAAGCATTGGCGTGCAGGAGACATGTCTTTGG
TTGGTTGCTACGTCAAAGCAGATATTGAAAAGGGCGACAATAAAAGGTCT
TTGGGTTGTACAGCAGTAGTGTAGCGGTGCATGCCGTGAATCTCACACGC
GTCGAGAGGCTGCGAATCAACAAGCATTGCTTTGATAGCGTCTTAGGCAG
CCAGTGGTGAACACAGCAGTGGCATCCCTATTTTGACATGGCTGCGCCGA
TTGCCATTCTGAAGTTCAAAACACCAGCAAAGATATACTGCTCCAAATCA
TTTTTGAAAGGTTTGAGGTCTAGGCGAATGCCGTGCGGCAGCACGAGAGA
TATTATAGAGGACGACCCTAAATTTTGTGCGTGCCGAAACTATGTTACAA
CCCCCCCATGCAAAATCGTGCGCTCCTCTAACAATCTTTATTCTATCCGT
TTCTCGCGCGCTACAGGAAATAGGGGGAAGCTTGGAGGAGACCGCTGCCG
AGATCGAGGCCGCCGGCGGAAAAGGGATTCCTGTGGCTTGTGACCACGCT
AAAGACAAACAGGTCAGTAATGCACACAGAAGTCAACGACTGATTTGGTA
GAGCGGCCTGATCCATCGGAAAACGCACACCTTTTTGCTCTGGGTCTTGC
TTTCGTGGCTGAATACGGTGCCTCCAATCGTTTGCTGCGCCAGATAGCAG
TGGTAGCGGCATCCAGGCCCTTGAGGGCAACCAGGGGGTCATGGCTTTGG
TACAGAACCCCCTCAGCCCCGAGCGTAGCTAGCACATCGACAGATTATTG
CCGCCGGTTCACCATCAAAAGTCGTGTGCATGGAGGACAACACTCGTTCG
GCACGACAGCGTTACTTAGTTAGACCTAGCGCCAAGCAGACCGACGTCAC
GAGAAGCTTCTTCGGCATGAACGTCTTTGTTTTGTTCTTTCTCGTCCCGA
TCGCGTGCTTTGCCCTGTTTGATTTCCTCAAAAGTCTCTCGACAGCCTTT
CAACCGCAGCTTGCCCTGAATCCTCTTCCTGCCTTCGCTCCTTTGCACGT
CTGCCTCTGACAACGAACCAAAGTGCGCGCTTCGCTTGCCCAAGTATTTC
TCGTCCTACCATTCCGCCGCCTTTGTTGCAACACCTCAATCCCGCTTCAA
AAAACACCAGCTAGAATCGCACTCGTCAACGATACACGCCCGCCCCGTTG
GAACTCCCTTTTGCGAGGCAACAGCAGCAGTATGTCGGAAAACCTTCGAT
TCATGCCTCAAGGATCAAGCACCACGTTCGTTGTTCACGGCGTGAGCCGA
AGACTGGTTGCTACCGTTCGACGTGGAACGTTGTGGCCTATCCTCGCGTT
GCTCACTGCAGGAGGCACCATCTAATAATCTCTTACGTGGCCCGAGCCTA
GTTTCTTAAGTCCTCTGTGGGGCAGGTACAGTCGAACCTCTGTTAAGGAC
ACACATGGTTTTTTGCTAAAAACAATGTCCGCAAGGTTCATACCCCTCCT
TATGCTGTGCATTCGGTGAGCCACCACGCCTGTGAGAAAAACGTTGTCCG
TAACCGAGGGAGTTTTAATTAATTTTGTGGTCCTTACGCGAGGTACGACT
GTATCCCAACATAGACAATAATAGTTTTAAGTGTACATATTCTAAGGTTA
AGTTTTATTAGTTTTTTCCGTTTCGTGTAGCCAGAGTTCTTACTCCCAGG
TTCTTATGTGGTGGCCCGTTCCGTACAGGTGAAAGCGTTGTTCGAGAGGG
TGGAGTCGGAGCAAGGCAGGCTGGACATCCTCGTAAACAACGCCTTTGCG
TTAGGCCCGGGAGATCAACTCCAGGCCAAGTTCTGGACGCAGGGGGTGAG
GAGAGCGCGGTAGTTTGTAGTTACACATGCCCGCACATGACAACTTGTCT
TGTTTAATTTCTTGGAGGCATGTTTTGTTTCAAGGAAGGTCGACTTCGCT
GCTGGGTCGTGTGTTTTGTGGCTTCCACTGCTTCTTTTTTTCGTTGTTTC
GGAAACAAGGACTCCCTGTGGATGAACGAAGGAAATGCTTCGTCATCGAA
GGTGGTATCCTTCAGCACACGTGCAGTACCTCTACTCTGTTGACGGGGGC
GGGCTCTCTCCTCCCAAGAGCGAAGAACACCCTACCTGTTGGTTGTCAGG
CGTATTAGTAGGGACGCGAAAACATTCCGGGCGTGTGGCTCTGGCCCTCT
TGGTCGACGCAGAAGCAGCACAACAAACACCTTGTGATTTCATCGACGGG
AGGGGGTCGTTTCAGTTGGACTTGTTGCACTGACCGAAGACTTGGGGTCC
ACAGGTGGTACTACTCTTCTTGATGAACAAAAGCAACGTGTGATAAGAAT
GCCTCACGCATCATTTGGTGTTCTGGTTGTGGCTCGAATACAAACACCCA
GGCGGACGCATGGGACTCTCTGATAACCGTGGGTCTTAGGAGCCACTACA
TGGCCTCGTGCTTTGCGGCGCCCCTCATGATCAAGTCGGTGAAGGATCGG
GGCGGAAAGCCGGGCCTGATCGCCTGCGTGAGCTCCTTCGGCGGCCTGAC
CTACTCGTAAGCATGACGACACGAACCGCTTAAATCTTGGGGATGTAGGC
TTGTGGATGTTGACGATTGTCCCGTATCGGTTCTCGAAGCGGTGGTGTAG
ATTGTCGTCGAAAAGGTATGTCCTAATTTTCTTGAGATAGTGCGTGCACT
CTCCGCAGTGTGTCGCGCAAGCAGAACAAACCCTATGCAGCAATGACCAC
TGACGTACATAAGCAGAGCACCCGATTGTGCAATCTTATAGTCACAGGTC
AAAGGCAAAACTCAAGTGCTGCGTGTGAGCCTGTACGTATCCTGCACAGC
TGCAGCGCGGCGTACCAACTCACTTGTTATGCCGCTGGACTCTTTAGTAT
GAGAGGCTTGACTCTGAGTACGCTGGAAGTCCGAAGGAGAGGAAGATGGG
TCGGTGGAAATGTAGTCACTTGATCAGTGGAGACCAGAAAGAATGAAGAG
AAACAGAGTGAAAACCACAGAGGTGGATCTCTCCAGAAAAGCAGAGGGTT
AGTGAGCTCCAGGAAAGTAAAGGGTTGGAGAACCCCAAAGAAGCAGGGTG
AGAGGATGGGGCGAGTGCGCGCTCATCCACGAAATCATTGAATAACACCT
TTCCGACAAAGTCGACCAATCACACGTGTTCAGAGTACGGTACTGGTAAG
ATACGTTTCTGGATATTATGACTTCAACACCATGCTCTCGAACTTGCCAC
GTATGCATAAGTACTGTACTTGCAAGCACCAATGATTACTTGCACTGACG
TACGACAAAACGCAATACGAAGTATACAGCTTCGACAACTGAACGACTTC
CGAATTCGGCTGCTGAGCGCATACGAATATTCATTCATTCAAGCTCGCAA
GTCTGAGTAACTTGCGGCGGTGCATATTCCTTTCACGCACACAAGTCGGA
GATGCTTGTGACAACTAGGCGATGCATAGGTCTCCAAGCACGCAAGGCTG
AGCTACTTTAACTCAACACTGGTTTGATTTATTTCTGGAAATTTATGTAG
ACTATACAACTAGGCGATGCATAGGTCTCCAAGCACGCAAGGCTGAGCTA
CTTTAACTCAACACTGGTTTGATTTATTTCTGGAAATTTATGTAGACTAT
GCATGTTCCGGATACATCAACCAGGTTTCCTTTTTCCTTTTCCGAGTATG
ACCGACCGAACGGAATTTTATCTACGACATGACATATTGTAGCGACATTG
ACAATATTTGAAGTAGTCAAACTGGCCACTTAATGCTCAAGGTACGGTAG
TGTCAAATATTACAACACGCCCCCTCAATGAAGCAATGTCCAATGTCCAC
GAACAGCTTACAATGAATATCACCGATGCTGAGATGCTGCGAAATTTCAA
CAACGTGCAGACAGTTCTTCTTGGATGCGTACTCGTGACACAAAAATTGT
CAACCCCACCGCTCGCTCTTGGTATGTAATCAATGAACAAACTTTTACAT
ACCTATTGCAGAGCTCCAATTAATGTTTATCATGAACACACAGATATCCC
GTATATTATTAATAACGAACTATGTGTTACGATGTAGTCACAGATATATA
TGCCCCGTGGAATGATATTCACCAAATACGAGTTTCGATGTAGTCGCAAC
AACGCAAATGTCTAGGCTATCCGTCATCATGGAGGGAACATTCTTCATGG
TTGATGACAAGAAATGACAGTCGACGTCTCGACCAAAATCGTCCAGCCTT
TCCTCGGGAAGAGGAGTGACGGAAAAAAAATTGGCTCGGCTACGCAGAGG
TGCCTTGATTTCCACGTTTAATGCTGAAAACAAGGACACCCGTTTTCAGT
GATTCTGATTTCCACAACTGGATCAGGGTCATCCATACTGCGTCATCTAA
CACTGATTTGATCAGGTTAGCATCAGCAAAACTATCGGGCTTGCACGTTA
AATCATGGAAGACATGGTACTTGAAAGAAAAAATGCCGACGTCACGCAAA
ACGATCCAGATCCGCTCAGCAGGAGAGTGAGACGAAAACAATACGTTGGC
CATTAGATGGCCAAGCCATCCCCAATTCAAGTTGAAAAAACTTCGAATTA
CAGAAGGCTTCATTTGCCCTTTTGCCTTGCTCTTGCCTTTTTTCTCGCGT
CTGCTATCGTCGTTGCTGTCATCTCCACTGAATGACTCTGAGTCGTCTTC
GGAGATGTTGCTGCTGCTGGACGTGTAGTCATGCCTCCTTGCTTATGGTG
GAGATGGCGGTCCTCCTCGGGGTCGAAGGAAGAGGGTCCTCCAGGAAATC
TTGAAACAGGCTTTTGTCGGTCTTGTCATCGTCCTTGATCCTGGACTTTA
AGTCGCCAAGGATAGGTTCGCGCTGTTGCTCCAATCCCTCGATGTCGTCG
CGTGAAGCCTCGATCCGTTCGCTAATCTGCGAGTCAACTTCGCACAGCGC
GTCCGTCGTGAAAAACTTAAAAGAGTACCCTCGAATGTCCTCTTTTGGGA
AAACCTCGACGTGTCGTCGATGTAAGAGTGAGGAGGTGACGGCTGAAAGT
GGAGTGAAGGCGTGAGGGCACATCCTCCTTCCTGCCTGATCTCGCATTCC
GTCCAGTCCCGATGACCTGCCACCGGTGTGAAACATGCACGTCCGGGATC
ATGCCTCGAAAGATTTCACGATGCAAATTTTTCCAACCACGCAAGGCTGA
GCTACTTGAACTCAATACTGGTTGACTCATTTCTGGAAATCTAGACTATG
CATATTCTGGATATGAAATATAGAACATCAACCAACTATTTTTCCCTATT
CCGAATTTGACAGACCACACAGAATTTTATCTACATGTCACAGCGAAATT
GACAATATTTGAACTACAACAGTCAAACTGGCATACTTGCTCAACTCGAC
GCCGATGTCTCGTTTGGTCTCGCATCGTTCTTCTCACGAACCGTGTGTAC
CTTCCTGGTCTTTTTCACTTTCCGCAAACCAACATACCACATTTTTTTTT
TCGCTTCGGGAACCACCCCCTACAAGGTTCAACGTGGCCTATGGCGTGGG
GAAGGCTGGGGTTGACCGTCTGGCGAAGGACATGGCGGTAGGTGAGCAAC
CAAGAACCAGGAAACTGCTGTAGTTTTTCACGTTTTCCTGCGATGGTTTG
AGTTTTAGTTTGTCGCGCGATGTTGAAGTGAAACTTTCTGCGGCTCTCTT
TCTTTGTGAGCCTGTGCGAAGTTTGTAGGGGTCGCCGACAACAGCACGTG
GCAATTTCATGCTTTGCGCTTTCAACACGCAGGTTTTCAACCTCTCTCGC
TCATAACCCTAGGTAAGAAATGCAACGTTGAAGCGATGTCTACCCACAAT
CCAACAACACCCATAATTGTTTTTCCAATTCTATGTAGTCATGCCTCTCT
CTTTCCCTGCGTCGCCGCACAGAGCTGGAAGAGGAGAAGGTGGCCGTGGT
ATCCATGTACCCTGGGATCGTCAAAACAGAGAAGATGAAGAGCTTGATGA
CGAAGAGCCCTGCAGAATTCGAGGCGAAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7422:735..7513-

>mRNA_Ecto-sp13_S_contig7422.18602.1 ID=mRNA_Ecto-sp13_S_contig7422.18602.1|Name=mRNA_Ecto-sp13_S_contig7422.18602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7422:735..7513- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACACTCGGACAGCGTGGGTGCACGGTCTACGTTACAGGTCGATCTGT
TGGGGGCAATACAACGGACAAGGCAAGGCAAAGGGAAATAGGGGGAAGCT
TGGAGGAGACCGCTGCCGAGATCGAGGCCGCCGGCGGAAAAGGGATTCCT
GTGGCTTGTGACCACGCTAAAGACAAACAGGTGAAAGCGTTGTTCGAGAG
GGTGGAGTCGGAGCAAGGCAGGCTGGACATCCTCGTAAACAACGCCTTTG
CGTTAGGCCCGGGAGATCAACTCCAGGCCAAGTTCTGGACGCAGGGGGCG
GACGCATGGGACTCTCTGATAACCGTGGGTCTTAGGAGCCACTACATGGC
CTCGTGCTTTGCGGCGCCCCTCATGATCAAGTCGGTGAAGGATCGGGGCG
GAAAGCCGGGCCTGATCGCCTGCGTGAGCTCCTTCGGCGGCCTGACCTAC
TCGTTCAACGTGGCCTATGGCGTGGGGAAGGCTGGGGTTGACCGTCTGGC
GAAGGACATGGCGGTAGAGCTGGAAGAGGAGAAGGTGGCCGTGGTATCCA
TGTACCCTGGGATCGTCAAAACAGAGAAGATGAAGAGCTTGATGACGAAG
AGCCCTGCAGAATTCGAGGCGAAT
back to top