mRNA_Ecto-sp13_S_contig74207.18601.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74207.18601.1
Unique NamemRNA_Ecto-sp13_S_contig74207.18601.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74207.18601.1 vs. uniprot
Match: A0A6H5JR35_9PHAE (Riboflavin kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR35_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.810e-25
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 QQFPSLRRIAEACHPSVEGAPRVVDAGCGTGALVSFLKEVGVKERDVTGVDVSPEV 168
            +QFPSLRRIAEAC PS +GAPRVVDAGCGTGALVSFLKE GVKERDVTGVDVSPE+
Sbjct:   88 EQFPSLRRIAEACRPSADGAPRVVDAGCGTGALVSFLKEAGVKERDVTGVDVSPEM 143
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BLAST of mRNA_Ecto-sp13_S_contig74207.18601.1 vs. uniprot
Match: A0A1G1C404_9BACT (Methyltransf_25 domain-containing protein n=1 Tax=Microgenomates group bacterium RBG_19FT_COMBO_39_10 TaxID=1817748 RepID=A0A1G1C404_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 2.230e-5
Identity = 19/42 (45.24%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   43 PSVEGAPRVVDAGCGTGALVSFLKEVGVKERDVTGVDVSPEV 168
            P +E   RV+DAGCGTG  +  L ++GV+E+++ G D+SP++
Sbjct:   37 PILESKMRVLDAGCGTGRTIKLLLDLGVREKNLIGTDISPDM 78
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BLAST of mRNA_Ecto-sp13_S_contig74207.18601.1 vs. uniprot
Match: A0A343TNI0_9EURY (Methyltransferase type 11 n=1 Tax=Halalkaliarchaeum desulfuricum TaxID=2055893 RepID=A0A343TNI0_9EURY)

HSP 1 Score: 48.5 bits (114), Expect = 5.170e-5
Identity = 25/53 (47.17%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:   19 RRIAEACHPSVEGAPRVVDAGCGTGALVSFLKEVGVKERDVTGVDVSPEVRFF 177
            RR+ EA    +  APRV++AGCGTG  V  L   G++E D  GVD  P V  F
Sbjct:   22 RRVREAMLAGLPPAPRVLEAGCGTGVTVPRLLSWGLREFDYLGVDHDPHVVAF 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74207.18601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JR35_9PHAE1.810e-2589.29Riboflavin kinase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A1G1C404_9BACT2.230e-545.24Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A343TNI0_9EURY5.170e-547.17Methyltransferase type 11 n=1 Tax=Halalkaliarchaeu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74207contigEcto-sp13_S_contig74207:72..248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score109.4
Seed ortholog evalue5.9e-22
Seed eggNOG ortholog2880.D8LGN9
Preferred nameRFK
Model size177
KEGG rclassRC00002,RC00017
KEGG koko:K00861
KEGG ReactionR00549
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006771,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008531,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009124,GO:0009156,GO:0009161,GO:0009165,GO:0009231,GO:0009259,GO:0009260,GO:0009398,GO:0009893,GO:0009987,GO:0012501,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0033860,GO:0033864,GO:0034641,GO:0034654,GO:0042364,GO:0042726,GO:0042727,GO:0043085,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046444,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0050789,GO:0050790,GO:0051186,GO:0051188,GO:0051341,GO:0051353,GO:0055086,GO:0065007,GO:0065009,GO:0071704,GO:0072593,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons1
EggNOG free text desc.riboflavin kinase activity
EggNOG OGsCOG0196@1,KOG3110@2759
Ec32 ortholog descriptionRiboflavin kinase domain, bacterial/eukaryotic
Ec32 orthologEc-10_002950.1
EC2.7.1.26
Cds size177
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464011.0880833-CDS-Ecto-sp13_S_contig74207:71..2481681464011.0880833-CDS-Ecto-sp13_S_contig74207:71..248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74207 72..248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74207.18601.1prot_Ecto-sp13_S_contig74207.18601.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74207 72..248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74207.18601.1

>prot_Ecto-sp13_S_contig74207.18601.1 ID=prot_Ecto-sp13_S_contig74207.18601.1|Name=mRNA_Ecto-sp13_S_contig74207.18601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
QQFPSLRRIAEACHPSVEGAPRVVDAGCGTGALVSFLKEVGVKERDVTGV
DVSPEVRFF
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mRNA from alignment at Ecto-sp13_S_contig74207:72..248-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74207.18601.1 ID=mRNA_Ecto-sp13_S_contig74207.18601.1|Name=mRNA_Ecto-sp13_S_contig74207.18601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74207:72..248- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCAATTTCCGTCGTTGAGGCGCATTGCGGAGGCGTGCCACCCTAGCGT
GGAGGGGGCCCCACGGGTGGTGGACGCCGGGTGCGGGACTGGGGCCCTGG
TCTCTTTCCTGAAGGAAGTCGGCGTGAAGGAGAGAGACGTTACAGGGGTA
GACGTGTCTCCGGAGGTACGATTTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74207:72..248-

>mRNA_Ecto-sp13_S_contig74207.18601.1 ID=mRNA_Ecto-sp13_S_contig74207.18601.1|Name=mRNA_Ecto-sp13_S_contig74207.18601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74207:72..248- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCAATTTCCGTCGTTGAGGCGCATTGCGGAGGCGTGCCACCCTAGCGT
GGAGGGGGCCCCACGGGTGGTGGACGCCGGGTGCGGGACTGGGGCCCTGG
TCTCTTTCCTGAAGGAAGTCGGCGTGAAGGAGAGAGACGTTACAGGGGTA
GACGTGTCTCCGGAGGTACGATTTTTT
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