mRNA_Ecto-sp13_S_contig7409.18591.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7409.18591.1
Unique NamemRNA_Ecto-sp13_S_contig7409.18591.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7409.18591.1 vs. uniprot
Match: A0A6H5K6N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N1_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 3.790e-67
Identity = 166/175 (94.86%), Postives = 166/175 (94.86%), Query Frame = 3 
Query:   12 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQQEIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGDDEGSSSGTDGSDSEXXSRADRK 536
            MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQ EIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDD   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGDDEGSS   DGSDSE  SRADRK
Sbjct:    1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQ-EIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGDDEGSSXXXDGSDSEEGSRADRK 174
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BLAST of mRNA_Ecto-sp13_S_contig7409.18591.1 vs. uniprot
Match: D8LNA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNA4_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 2.650e-61
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 3 
Query:   12 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQQEIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDD 350
            MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQ EIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDD
Sbjct:    1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQ-EIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDD 112
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BLAST of mRNA_Ecto-sp13_S_contig7409.18591.1 vs. uniprot
Match: A0A836CMD5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.310e-21
Identity = 59/113 (52.21%), Postives = 75/113 (66.37%), Query Frame = 3 
Query:   12 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQQEIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDD 350
            MSQC  CFVGQC+RH LQDHGKR   L +K+       +R+++ ++  Q+DK EA     NA   Q+ YK    K RDRAERRGNKL+ +QQ +A K RLGGHLV+ M+DS D
Sbjct:    1 MSQCGACFVGQCKRHPLQDHGKRTKDLMAKLPSKSETLKRVYETLLKKQVDKFEAQT---NAVSDQQAYKEKQGKERDRAERRGNKLTREQQEKAKKLRLGGHLVNLMIDSSD 110
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BLAST of mRNA_Ecto-sp13_S_contig7409.18591.1 vs. uniprot
Match: W7T9Z9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9Z9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.360e-9
Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 3 
Query:   12 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARG---ANAGDQQEIYKASVSKARDRAERRGNKLSSKQQRQA-AKSRLGGHLVHTMLDSD 347
            MS CP C+VGQC++HKLQDHG RE  L S   +    Q+RL++ +V   +D L+   +    A AG  +  Y+ +V K R++A+R+ +K S +Q R+A A   L G L+ TML +D
Sbjct:    1 MSSCPQCYVGQCRKHKLQDHGARERALLSSRSE---LQRRLYESLVQPHVDTLKTTKKATAEAEAGHCR--YRDAVGKDREKAQRQKSKFSEEQVRKAQALGGLRGDLLRTMLAND 111
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BLAST of mRNA_Ecto-sp13_S_contig7409.18591.1 vs. uniprot
Match: A0A662WHJ0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHJ0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.870e-5
Identity = 29/90 (32.22%), Postives = 52/90 (57.78%), Query Frame = 3 
Query:   12 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQQEIYKASVSKARDRAERRGNKLSSK 281
            M+ CP C+ G C RHK QDHG+  +    K V+ ++  Q+++D++V A+L KL+A A    +      ++  +  +RD++ R+ +K   K
Sbjct:    1 MATCPQCYTGTCSRHKRQDHGRSMV----KSVNAESTMQKIYDKLVGAKLQKLQAEAEKDPSRQHTAAFRQQLDASRDKSMRKSSKSRGK 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7409.18591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K6N1_9PHAE3.790e-6794.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNA4_ECTSI2.650e-6199.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMD5_9STRA2.310e-2152.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7T9Z9_9STRA1.360e-941.38Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A662WHJ0_9STRA5.870e-532.22Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7409contigEcto-sp13_S_contig7409:1229..4602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score213.8
Seed ortholog evalue1.2e-52
Seed eggNOG ortholog2880.D8LNA4
Model size1550
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2CDWX@1,2S5HT@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_004580.1
Cds size933
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7409.18591.1prot_Ecto-sp13_S_contig7409.18591.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7409 1240..3882 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464010.1473382-UTR-Ecto-sp13_S_contig7409:1228..12391681464010.1473382-UTR-Ecto-sp13_S_contig7409:1228..1239Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7409 1229..1239 +
1681464010.1973257-UTR-Ecto-sp13_S_contig7409:3882..39711681464010.1973257-UTR-Ecto-sp13_S_contig7409:3882..3971Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7409 3883..3971 +
1681464010.2058775-UTR-Ecto-sp13_S_contig7409:4085..46021681464010.2058775-UTR-Ecto-sp13_S_contig7409:4085..4602Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7409 4086..4602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464010.170675-CDS-Ecto-sp13_S_contig7409:1239..14341681464010.170675-CDS-Ecto-sp13_S_contig7409:1239..1434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7409 1240..1434 +
1681464010.1800857-CDS-Ecto-sp13_S_contig7409:2536..30161681464010.1800857-CDS-Ecto-sp13_S_contig7409:2536..3016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7409 2537..3016 +
1681464010.189003-CDS-Ecto-sp13_S_contig7409:3624..38821681464010.189003-CDS-Ecto-sp13_S_contig7409:3624..3882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7409 3625..3882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7409.18591.1

>prot_Ecto-sp13_S_contig7409.18591.1 ID=prot_Ecto-sp13_S_contig7409.18591.1|Name=mRNA_Ecto-sp13_S_contig7409.18591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQL
DKLEAAARGANAGDQQEIYKASVSKARDRAERRGNKLSSKQQRQAAKSRL
GGHLVHTMLDSDDDGNDSDSDDGKGRAKGGRKSKDKKRKSRKEKKRKHRG
SGDDEGSSSGTDGSDSEEESRADRKRRRKDKKKERRHRSGGSNGKEKSSS
EKKKDKSDRKERKKERKERRRSEKKNKKRIRQEERAGGEGDGDDARNGDD
KGAPPVAAIDAAGKMDVVVTNGGSGGGRSSGSSSSSSSGSGSDDDAGEGG
GRRDRATDPL*
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mRNA from alignment at Ecto-sp13_S_contig7409:1229..4602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7409.18591.1 ID=mRNA_Ecto-sp13_S_contig7409.18591.1|Name=mRNA_Ecto-sp13_S_contig7409.18591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3374bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7409:1229..4602+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCCGACGTCATGTCTCAGTGCCCTCACTGCTTCGTGGGGCAGTGCCAG
AGGCACAAGCTGCAGGACCACGGCAAGCGCGAGCTCCTCCTCAAGTCCAA
GATGGTTGACCCCAAGGCCGCCCAGCAAAGGCTGTTCGACCGCGTGGTGA
CAGCACAACTCGACAAGCTGGAGGCCGCGGCGCGAGGCGCCAACGCAGGA
GATCAGGTATGATGACGAAGGGATATATAGTTGTGATGTCCTGTCGGGGC
GTGGCGTAGTGCGTGGGGACTCTGCTCTGCTGCTGCTGGTTTTATCTCAT
CGTTAGGTATTTTTTGAGACGGGAGAGTTCTCGTCATAGCGCGCCCGCGT
CGCCTCTATTGCTGCAGGTGTTGGTACAGACGTACAGACACTACCCTTGC
TCCGACGCCCGCGCTCTGCCCTGAGACTACGGGGCGAACTCGCCGAGTAT
ACCAACGCAGACGTTCCGGTGTTCATCCTCGGTACTACCGCCGCTCGCTT
TCCGCACATAAGAATGAGCAGTTCTCAAAATGCTGCCATCGACACCCACA
CCACCCCCAAACTTGTAAATAAATGTTCTGACGTCCAGCCTGGGAGTTGA
CCAGGATGGACAACAGCAGTCGCTTGAAAGTCAGCCCACTACATATTGTG
GGGCTGCGTTGTACCATATTTTAAGCAACACGCTGAAGCAGTTGATGATA
TTTACTTGTTAAGCCTGTAAGGGTGATCTAGCTCTCCAGGCAGTCCCCTT
CGTGAGGAGAAGCCGCGCTGCCCGTCTACCGTTGCATTCGAGTGATTCGC
TCAGCACCTAAATACTGCCTATAGAAATCGAATTCGCAGCTCGATTACTC
CGCAAAACGACGCGAACAACTACCTGACACAAGGAAAGAAACTTCTCTAC
AATATCTCTGCAGAGCGACTATTTTCCACACTGGCGGCCGCTTGATTTGT
GGAGCAGTTTAGCTGTGAAATGCGGTCTCGGGGGTGTGCGATCGATTACT
CGCGCTCGTATGTTGCATCGACCCGATTTCTTAGTCTATTCTCAGCTTCA
TCTAGCATGCAACGATAGTCTTCTCGTTCGCCGGAGACGCCTCCACGTCG
CACAGATAGTTGCTTCTCTGCCATGCTTCTTGTTGAAATAAACATCGAAT
ATCGAGTGCCGCTGTGCCACATTTGGTTTCGCTGCCAGAACCATGGTTGA
GCAAGCCAAAGGGGCATTTTTTCTTCTCACCGTCCCTCCCCGGCCCCCCT
TCCAACTCGTTTTCACTCTGGGAAAACCCCCAACAATGGTTTACGTCTTC
GAGATGAGCAGGAGATCTACAAAGCAAGCGTGTCCAAGGCGCGCGACCGC
GCCGAGCGAAGGGGGAACAAGCTCTCCAGCAAGCAGCAGCGGCAGGCGGC
CAAGTCTAGGCTGGGCGGGCACCTCGTCCACACCATGCTAGACAGCGACG
ATGACGGCAACGACTCCGATTCCGACGACGGGAAAGGGCGAGCCAAAGGC
GGAAGAAAGAGCAAGGACAAGAAGCGCAAGAGCCGAAAGGAGAAGAAGCG
GAAGCACAGGGGGAGTGGCGACGACGAGGGCAGCTCGAGCGGGACCGACG
GTAGCGACAGCGAGGAGGAGAGCAGAGCCGACCGGAAGAGACGCAGGAAG
GATAAGAAGAAGGAGCGCCGCCATCGCAGCGGCGGCAGTAACGGCAAGGA
AAAATCCTCGTCTGAGAAGAAAAAGGATAAGTCGGACAGGAAGGAGAGGA
AGAAGGAGCGCAAGGAGAGGCGCCGGAGCGAAAAGAAGGTGAGGCAGGAT
GTGTAGAGGGGCCCACCAACCCGCGGTCGGACAGCTATGGGGCCTGCTGT
GACGACGAGGAGGGGGCGTAGGATGGTGCAGAAGCGATGCCAAGTGGCTA
TGGGAACGGCAGCAATGCAGGAAGGAGTAGAACAAGGATCGAAAGCGTGG
TTAGAAAGAAGCGACCGTGGCGGTTGTGCGTGAGGGGACTAATCGTTCAT
CGTGCCCCAAGTGTGTTGATCCCAACGGAGGCTTGCGTGGGCTGGAATTC
TGCTTCGGATATCGGAAGATAATGCCCTGCGAGTGATATAGGGGGTGAAG
GGCGATGAAAAGAACACAACAGTTTTGTAGAAATAGGGTTGAGACCCAAT
CGTTTCAATTTACGTTTATTGTTCGACGTGCAGCACAACCCACGACGGTA
GCGGGGCACGTTCTCCAGGGTGCAGGGCACTTGAGAGATTGCACCGATAG
TCCTTGGCCGCCCTTCACCTCACCCCGCCCGCTTGAGGCCCGGGCTCCTG
TGTCGAAGCGATGCCGAACCACCCATTGACCGCCGCCGTCTGACGCGTGA
ATCACCGCGGCTTGTCTTGAACACTCCGTTACCGTTAACCAAACAGAACA
AGAAGAGAATACGGCAAGAAGAGCGTGCCGGCGGCGAGGGAGACGGCGAT
GACGCCAGAAACGGCGACGATAAAGGCGCGCCACCGGTGGCGGCTATTGA
TGCTGCTGGAAAAATGGACGTTGTTGTCACAAACGGCGGCAGTGGCGGGG
GCCGCAGCAGCGGCAGCAGTAGCAGCAGCAGCAGTGGAAGCGGCAGCGAT
GACGATGCCGGCGAGGGAGGAGGGAGGAGGGATCGCGCTACCGATCCGTT
GTAGACGGCGGTGGTGCTTTGAGGGGTGGCTGTTGGAGTCCGCTAGGTAC
CTCGTACAGAAAACAGCGGCGTTCTAAGCAGGCTTTTATTTTGGCTACAA
GCTGAACCCACCGGCTAGCTTTGAGTAGCTGCGCAGCTGACTTTGAGCGT
TAAATCGCGCGCCGAGCTATTGCTGTGTATCCCCGTCACCATCCTCGTCA
GATGTAGACCCCCCCCCCCCCCCCCCCGCCCGGCAGAGAGTATTCCTCGA
CGCCAGAAATCGGGTTCCTCGTTCTCGAGGCGTCTGGTGAAGCAGTCAGT
TGGGATGATGCGGCCCGCCTTCATGAGGTGTAAAGCGGACGGCTTGGGCG
TGCGGATGGTAGGCGAGCACATGGAATGCGCGCCATCCCTGCATGCAGCA
GGGTGGGATGGATGGAGATACTGAAGTCTTGGGTGTGGAGATAATGAGTA
TGGGCAAATCGGTGTGTTGTGACGTGTTGTGTTTTGTTTTCACAGCTCTC
CGATGCGGGTAACCGGGCGCGTGGCCGGTTCATGGAATAGTGTGGGTGGG
CTGTGATTAGGATGTGTAGGCGTAGAACATTATTTTGGCGTGTTTCGGTG
GACAGTGTTGGATATTTGAGGAATGGGCAGAGAAACAGGATGTAATACAT
GGCCTTTTTGACGAGGTTGTTGAATTCAAATGTCATGGATGTCTTTCGTG
TTGTAAGAAAAAAACATAAATGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7409:1229..4602+

>mRNA_Ecto-sp13_S_contig7409.18591.1 ID=mRNA_Ecto-sp13_S_contig7409.18591.1|Name=mRNA_Ecto-sp13_S_contig7409.18591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7409:1229..4602+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCAGTGCCCTCACTGCTTCGTGGGGCAGTGCCAGAGGCACAAGCT
GCAGGACCACGGCAAGCGCGAGCTCCTCCTCAAGTCCAAGATGGTTGACC
CCAAGGCCGCCCAGCAAAGGCTGTTCGACCGCGTGGTGACAGCACAACTC
GACAAGCTGGAGGCCGCGGCGCGAGGCGCCAACGCAGGAGATCAGCAGGA
GATCTACAAAGCAAGCGTGTCCAAGGCGCGCGACCGCGCCGAGCGAAGGG
GGAACAAGCTCTCCAGCAAGCAGCAGCGGCAGGCGGCCAAGTCTAGGCTG
GGCGGGCACCTCGTCCACACCATGCTAGACAGCGACGATGACGGCAACGA
CTCCGATTCCGACGACGGGAAAGGGCGAGCCAAAGGCGGAAGAAAGAGCA
AGGACAAGAAGCGCAAGAGCCGAAAGGAGAAGAAGCGGAAGCACAGGGGG
AGTGGCGACGACGAGGGCAGCTCGAGCGGGACCGACGGTAGCGACAGCGA
GGAGGAGAGCAGAGCCGACCGGAAGAGACGCAGGAAGGATAAGAAGAAGG
AGCGCCGCCATCGCAGCGGCGGCAGTAACGGCAAGGAAAAATCCTCGTCT
GAGAAGAAAAAGGATAAGTCGGACAGGAAGGAGAGGAAGAAGGAGCGCAA
GGAGAGGCGCCGGAGCGAAAAGAAGAACAAGAAGAGAATACGGCAAGAAG
AGCGTGCCGGCGGCGAGGGAGACGGCGATGACGCCAGAAACGGCGACGAT
AAAGGCGCGCCACCGGTGGCGGCTATTGATGCTGCTGGAAAAATGGACGT
TGTTGTCACAAACGGCGGCAGTGGCGGGGGCCGCAGCAGCGGCAGCAGTA
GCAGCAGCAGCAGTGGAAGCGGCAGCGATGACGATGCCGGCGAGGGAGGA
GGGAGGAGGGATCGCGCTACCGATCCGTTGTAG
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