mRNA_Ecto-sp13_S_contig74.18581.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74.18581.1
Unique NamemRNA_Ecto-sp13_S_contig74.18581.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74.18581.1 vs. uniprot
Match: D7FMH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH1_ECTSI)

HSP 1 Score: 492 bits (1266), Expect = 1.050e-166
Identity = 321/330 (97.27%), Postives = 326/330 (98.79%), Query Frame = 3 
Query:  804 FPQEARLRLPLVERQIENLTVQDMAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIARFEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRTRAVRQEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERDSRKERFVELKKNGEGSLAVREVYDAVISGVRDILATATFEARRAKHDYRGRGPDEVGPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGMAELGGGRVCRACGGPRFGRTVCAKCGANANSWRGEVVS 1793
            F +EARLRLPLVER IENLTVQDMAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIA+ EQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDR+RAVR+EKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERD+RKERFVELKKNGEGSLAVREVYDAVISGVRDILATATFEARRAKHDYRGRGPDEVGPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGMAELGGGRVCRACGGPRFGRTVCAKCGANANSWRGEV S
Sbjct:  114 FRKEARLRLPLVERHIENLTVQDMAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIAKLEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRSRAVRREKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERDARKERFVELKKNGEGSLAVREVYDAVISGVRDILATATFEARRAKHDYRGRGPDEVGPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGMAELGGGRVCRACGGPRFGRTVCAKCGANANSWRGEVDS 443
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BLAST of mRNA_Ecto-sp13_S_contig74.18581.1 vs. uniprot
Match: A0A6H5KAU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU5_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 5.100e-102
Identity = 250/304 (82.24%), Postives = 256/304 (84.21%), Query Frame = 3 
Query:  915 MLTNCMGMAFEEEKIMRVKIARFEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRTRAVRQEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERDSRKERFVELKKNGEGSLAVREVYDAVISGVRDILATATFEARRAKHDYRGRGPDEVGPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGMAELGGGRVCRACGGPRFGRTVCAKCGANANSWRGEVVSGGEEEEDEDAV 1826
            MLTNCMGMAFEE+KIMRVKIA+FEQDLQVLKLE     ADMDASSCREASRMEALRRMEITRGLNQAARDR+RAVR EKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVR+MERD+RKER           LAVREVYDAV                             VGPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGMAELGGGRVCRACGGPRFGRTVCAKCGANANSWRGEV SGGE+EEDED V
Sbjct:    1 MLTNCMGMAFEEDKIMRVKIAKFEQDLQVLKLE-----ADMDASSCREASRMEALRRMEITRGLNQAARDRSRAVRLEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRQMERDARKER-----------LAVREVYDAV-----------------------------VGPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGMAELGGGRVCRACGGPRFGRTVCAKCGANANSWRGEVDSGGEDEEDEDVV 259
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BLAST of mRNA_Ecto-sp13_S_contig74.18581.1 vs. uniprot
Match: F0YL39_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL39_AURAN)

HSP 1 Score: 127 bits (319), Expect = 7.780e-27
Identity = 92/232 (39.66%), Postives = 131/232 (56.47%), Query Frame = 3 
Query:  783 RRCLSCL--FPQEARLRLPLVERQIENLTVQDMAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIARFEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRTRAVRQEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERDSRKERFVELKKNGEGSLA-VREVYDAVISGVRDILATATFEARRAK 1469
            RR L  L  F  EA LRLP VE QIE L + D+  GW E  + EW+ LT+ + MA EE++IM+V I+R + +L  L+LE +D E D+D  + RE    E LRR+EI R   +A     R VR E+MRW VRDVR  V+KR RK        A  +R + +  TLS  KR+   ++ + E  + +  +R         +  G+L  +++ YD+VISG   +L +ATFE R  +
Sbjct:  865 RRRLKALRNFMAEAELRLPKVETQIETLDISDVENGWAEALQNEWERLTSQLAMASEEKRIMKVHISRCDAELLELQLEYEDIEVDIDDIAVREQEEFELLRRLEIKRADVRALAGWERRVRNERMRWRVRDVRTRVLKRERKTRTELLAKAIKKREIAMSSTLSIHKRKQFFKEAQREATKEDHANRASILAAAAADEAGALGKLKDTYDSVISGCAALLQSATFEMRNTE 1096
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BLAST of mRNA_Ecto-sp13_S_contig74.18581.1 vs. uniprot
Match: A0A812U498_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U498_SYMMI)

HSP 1 Score: 91.7 bits (226), Expect = 9.940e-18
Identity = 62/170 (36.47%), Postives = 101/170 (59.41%), Query Frame = 3 
Query:  822 LRLPLVERQIENLTVQDMAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIARFEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRTRAVRQEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMER 1331
            +R+P +E+Q+E++ ++D+  GWGE Y  E++ML+    MA EE ++ RV+I    ++ Q L LE++D E ++D  +  E +  E LR  E+     +  R+R R +R EK RW +R  R NVI+RS+      R+ A+  R ++   T+S+EK+  Q   E+  VRR ER
Sbjct:    1 MRMPDLEKQMEDIEMEDVENGWGEAYGTEYEMLSQQKAMAREELRLRRVQIRNSLEEEQELVLELEDTELELDRVASNEVNSYEYLRHSEVDEIWKRLKRNRDREIRIEKSRWGIRSKRVNVIRRSKDYFHGLRDRAQKTRDIQYATTVSHEKKAKQWDKEDINVRREER 170
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BLAST of mRNA_Ecto-sp13_S_contig74.18581.1 vs. uniprot
Match: A0A6A3YHQ6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YHQ6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.470e-15
Identity = 66/219 (30.14%), Postives = 124/219 (56.62%), Query Frame = 3 
Query:  825 RLPLVERQIENLTVQDMAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIARFEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRTRAVRQEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERDSRKERFVELKKNGEGSLAVREVYDAVISGVRDILATATFEARRAKHDYR 1481
            R P+VE+++  LT +D+  GWGE +E E  +L   + ++ E+    + ++  +E++++ L++E++D E DM+     E   +E+ R ME+ R  +  A ++ R VR +++RW  R+VR++VI R R+DLQ F + A A+R +E    L++EK++  +R  E  V    R   K+  V ++   + S  V + ++  +  ++ I    +F+ R  K D R
Sbjct:  514 RQPVVEKELSQLTEEDLDRGWGEAFETEKHILRFSLELSVEDILAKKQQVREYEEEIENLRIELEDLERDMEECILNETMELESYRDMELHRAGSLFAEEKARRVRLQRIRWGTRNVRKHVIMRERQDLQVFAKEALAKRQVEELGVLAFEKKQFVKRKLEQAVEDAARSRAKQNEVMMEMKRDSS--VLQGFNEAVQRMQAISQDLSFQYRLPKTDLR 730
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74.18581.1 vs. uniprot
Match: A0A6G0SAC8_9STRA (Exosome complex exonuclease n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SAC8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.700e-15
Identity = 66/219 (30.14%), Postives = 124/219 (56.62%), Query Frame = 3 
Query:  825 RLPLVERQIENLTVQDMAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIARFEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRTRAVRQEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERDSRKERFVELKKNGEGSLAVREVYDAVISGVRDILATATFEARRAKHDYR 1481
            R P+VE+++  LT +D+  GWGE +E E  +L   + ++ E+    + ++  +E++++ L++E++D E DM+     E   +E+ R ME+ R  +  A ++ R VR +++RW  R+VR++VI R R+DLQ F + A A+R +E    L++EK++  +R  E  V    R   K+  V ++   + S  V + ++  +  ++ I    +F+ R  K D R
Sbjct: 1821 RQPVVEKELSQLTEEDLDRGWGEAFETEKHILRFSLELSVEDILAKKQQVREYEEEIENLRIELEDLERDMEECILNETMELESYRDMELQRAGSLFAEEKARRVRLQRIRWGTRNVRKHVIMRERQDLQVFAKEALAKRQVEELGVLAFEKKQFVKRKLEQAVEDAARSRAKQNEVMMEMKRDSS--VLQGFNEAVQRMQAISQDLSFQYRLPKTDLR 2037
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74.18581.1 vs. uniprot
Match: A0A6G0KWS2_9STRA (RNB domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0KWS2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.870e-15
Identity = 66/219 (30.14%), Postives = 124/219 (56.62%), Query Frame = 3 
Query:  825 RLPLVERQIENLTVQDMAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIARFEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRTRAVRQEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERDSRKERFVELKKNGEGSLAVREVYDAVISGVRDILATATFEARRAKHDYR 1481
            R P+VE+++  LT +D+  GWGE +E E  +L   + ++ E+    + ++  +E++++ L++E++D E DM+     E   +E+ R ME+ R  +  A ++ R VR +++RW  R+VR++VI R R+DLQ F + A A+R +E    L++EK++  +R  E  V    R   K+  V ++   + S  V + ++  +  ++ I    +F+ R  K D R
Sbjct:  889 RQPVVEKELSQLTEEDLDRGWGEAFETEKHILRFSLELSVEDILAKKQQVREYEEEIENLRIELEDLERDMEECILNETMELESYRDMELHRAGSLFAEEKARRVRLQRIRWGTRNVRKHVIMRERQDLQVFAKEALAKRQVEELGVLAFEKKQFVKRKLEQAVEDAARSRAKQNEVMMEMKRDSS--VLQGFNEAVQRMQAISQDLSFQYRLPKTDLR 1105
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74.18581.1 vs. uniprot
Match: A0A6A3FKE1_9STRA (RNB domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FKE1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.880e-15
Identity = 66/219 (30.14%), Postives = 124/219 (56.62%), Query Frame = 3 
Query:  825 RLPLVERQIENLTVQDMAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIARFEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRTRAVRQEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERDSRKERFVELKKNGEGSLAVREVYDAVISGVRDILATATFEARRAKHDYR 1481
            R P+VE+++  LT +D+  GWGE +E E  +L   + ++ E+    + ++  +E++++ L++E++D E DM+     E   +E+ R ME+ R  +  A ++ R VR +++RW  R+VR++VI R R+DLQ F + A A+R +E    L++EK++  +R  E  V    R   K+  V ++   + S  V + ++  +  ++ I    +F+ R  K D R
Sbjct:  904 RQPVVEKELSQLTEEDLDRGWGEAFETEKHILRFSLELSVEDILAKKQQVREYEEEIENLRIELEDLERDMEECILNETMELESYRDMELHRAGSLFAEEKARRVRLQRIRWGTRNVRKHVIMRERQDLQVFAKEALAKRQVEELGVLAFEKKQFVKRKLEQAVEDAARSRAKQNEVMMEMKRDSS--VLQGFNEAVQRMQAISQDLSFQYRLPKTDLR 1120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74.18581.1 vs. uniprot
Match: A0A6A3LW89_9STRA (RNB domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LW89_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.100e-15
Identity = 66/219 (30.14%), Postives = 124/219 (56.62%), Query Frame = 3 
Query:  825 RLPLVERQIENLTVQDMAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIARFEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRTRAVRQEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERDSRKERFVELKKNGEGSLAVREVYDAVISGVRDILATATFEARRAKHDYR 1481
            R P+VE+++  LT +D+  GWGE +E E  +L   + ++ E+    + ++  +E++++ L++E++D E DM+     E   +E+ R ME+ R  +  A ++ R VR +++RW  R+VR++VI R R+DLQ F + A A+R +E    L++EK++  +R  E  V    R   K+  V ++   + S  V + ++  +  ++ I    +F+ R  K D R
Sbjct: 1324 RQPVVEKELSQLTEEDLDRGWGEAFETEKHILRFSLELSVEDILAKKQQVREYEEEIENLRIELEDLERDMEECILNETMELESYRDMELHRAGSLFAEEKARRVRLQRIRWGTRNVRKHVIMRERQDLQVFAKEALAKRQVEELGVLAFEKKQFVKRKLEQAVEDAARSRAKQNEVMMEMKRDSS--VLQGFNEAVQRMQAISQDLSFQYRLPKTDLR 1540
[Close]
BLAST of mRNA_Ecto-sp13_S_contig74.18581.1 vs. uniprot
Match: A0A8J5M2S0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M2S0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.890e-15
Identity = 51/152 (33.55%), Postives = 94/152 (61.84%), Query Frame = 3 
Query:  825 RLPLVERQIENLTVQDMAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIARFEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRTRAVRQEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEK 1280
            R P+VE+++  LT +DM  GWGE +E E  +L   + ++ E+    + ++  +E++++ L++E++D E DM+     E   +E+ R ME+ R     A ++ R +R +++RW  R+VR++VI R RKDL+  ++ A A+R +E    L++EK
Sbjct:  376 RQPVVEKELSQLTEEDMDRGWGEAFETEKHILRFSLELSLEDILSKKQQVREYEEEIEGLRIELEDLERDMEECVLNETMELESYRDMELQRARTMFAEEKARRIRLQRIRWGTRNVRKHVIMRERKDLELLQKEALAKRQVEELGVLAFEK 527
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74.18581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMH1_ECTSI1.050e-16697.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAU5_9PHAE5.100e-10282.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YL39_AURAN7.780e-2739.66Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A812U498_SYMMI9.940e-1836.47Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A6A3YHQ6_9STRA1.470e-1530.14Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6G0SAC8_9STRA1.700e-1530.14Exosome complex exonuclease n=1 Tax=Phytophthora f... [more]
A0A6G0KWS2_9STRA1.870e-1530.14RNB domain-containing protein n=2 Tax=Phytophthora... [more]
A0A6A3FKE1_9STRA1.880e-1530.14RNB domain-containing protein n=2 Tax=Phytophthora... [more]
A0A6A3LW89_9STRA2.100e-1530.14RNB domain-containing protein n=4 Tax=Phytophthora... [more]
A0A8J5M2S0_9STRA4.890e-1533.55Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74contigEcto-sp13_S_contig74:35545..43143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score131.3
Seed ortholog evalue8.8e-28
Seed eggNOG ortholog44056.XP_009041122.1
Model size1829
KEGG koko:K16743
Hectar predicted targeting categoryother localisation
Exons11
EggNOG free text desc.Short calmodulin-binding motif containing conserved Ile and Gln residues.
EggNOG OGs29C0P@1,2RJ48@2759
Cds size1086
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74.18581.1prot_Ecto-sp13_S_contig74.18581.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74 35545..39531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464009.0899405-CDS-Ecto-sp13_S_contig74:35544..358741681464009.0899405-CDS-Ecto-sp13_S_contig74:35544..35874Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 35545..35874 -
1681464009.1036406-CDS-Ecto-sp13_S_contig74:36309..363961681464009.1036406-CDS-Ecto-sp13_S_contig74:36309..36396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 36310..36396 -
1681464009.1171184-CDS-Ecto-sp13_S_contig74:36611..366751681464009.1171184-CDS-Ecto-sp13_S_contig74:36611..36675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 36612..36675 -
1681464009.1370494-CDS-Ecto-sp13_S_contig74:36976..370651681464009.1370494-CDS-Ecto-sp13_S_contig74:36976..37065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 36977..37065 -
1681464009.1492934-CDS-Ecto-sp13_S_contig74:37555..376511681464009.1492934-CDS-Ecto-sp13_S_contig74:37555..37651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 37556..37651 -
1681464009.1599848-CDS-Ecto-sp13_S_contig74:38583..387331681464009.1599848-CDS-Ecto-sp13_S_contig74:38583..38733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 38584..38733 -
1681464009.1718886-CDS-Ecto-sp13_S_contig74:38933..390671681464009.1718886-CDS-Ecto-sp13_S_contig74:38933..39067Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 38934..39067 -
1681464009.1876452-CDS-Ecto-sp13_S_contig74:39395..395311681464009.1876452-CDS-Ecto-sp13_S_contig74:39395..39531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 39396..39531 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464009.197192-UTR-Ecto-sp13_S_contig74:39531..399701681464009.197192-UTR-Ecto-sp13_S_contig74:39531..39970Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig74 39532..39970 -
1681464009.2069364-UTR-Ecto-sp13_S_contig74:41483..415801681464009.2069364-UTR-Ecto-sp13_S_contig74:41483..41580Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig74 41484..41580 -
1681464009.217583-UTR-Ecto-sp13_S_contig74:42279..423861681464009.217583-UTR-Ecto-sp13_S_contig74:42279..42386Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig74 42280..42386 -
1681464009.2287273-UTR-Ecto-sp13_S_contig74:43043..431431681464009.2287273-UTR-Ecto-sp13_S_contig74:43043..43143Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig74 43044..43143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74.18581.1

>prot_Ecto-sp13_S_contig74.18581.1 ID=prot_Ecto-sp13_S_contig74.18581.1|Name=mRNA_Ecto-sp13_S_contig74.18581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=362bp
MPLLKFLEHPVVLRRCLSCLFPQEARLRLPLVERQIENLTVQDMAAGWGE
NYEREWDMLTNCMGMAFEEEKIMRVKIARFEQDLQVLKLEIDDQEADMDA
SSCREASRMEALRRMEITRGLNQAARDRTRAVRQEKMRWAVRDVRRNVIK
RSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERDSRK
ERFVELKKNGEGSLAVREVYDAVISGVRDILATATFEARRAKHDYRGRGP
DEVGPAASAAATTAASVARKAAIAAARRGGGSGDSPEDAADAENAASIAA
AAAAAAASTTGMAELGGGRVCRACGGPRFGRTVCAKCGANANSWRGEVVS
GGEEEEDEDAV*
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mRNA from alignment at Ecto-sp13_S_contig74:35545..43143-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74.18581.1 ID=mRNA_Ecto-sp13_S_contig74.18581.1|Name=mRNA_Ecto-sp13_S_contig74.18581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7599bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74:35545..43143- (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGTTGCTTATCGAGGGGCAGTGTTCCGAAGGCATGCGAGGCGTCGGT
ATGAGGCATGGCTCGTGCGGCACAAGGGGTTCTCGGCCACGAAGATTCAG
GTACTGACCAGGAGGAGAGAGTGCCATGAAATAGTCGGACTTGAAGAGCA
ATTGGCTGTATGATCGCCTTGTCCATGTGGCGAGCGTGCACACTAGTTGG
TGCCTATGATGGGGAGACATGGGTCGACACAAATTTGCTAGGATTGTGCA
CTGGGCTACGGGGTTAGAGGTACGTGGTTGATGCAGGGTACAGTATCGAG
GAATACGATGGCCACCGAGATTGTTTCCATCCATATCCACCCGAAACTTA
TTGCTAGAAGGTAAAGTTCGTGATCCAACTATTGTCTTGTCACCATGGGC
ATTGCGTAACAACATAGGGTCCTCTAATTTTGAGTTCTCGCGTGTTTCAT
GGGCGTGTGTCACGGGCGAAATAATTGACGATGTTTCTGTTTCGGTACCA
GTACGATATTCTTCCGTGTATACCAATGATGGTGCTCACCGACGATGCGT
GATTTACGGGTTGGGATAGCAGTGAATCCTGCTGGGCAAGGAACCCCTTC
TTGGATAAATCAAACTCGACTTCCAAACACATCACTCAGAGTGCCTGACG
TGCGGTGGGAACTTGTCGCGACGTTACCCCAACAGTGTCTTCTTTTCTTG
CGCTTGTTGCGGACACGGTCAAACTAAAAACAGAAAATCCCGACTGTTGC
CAAACAGTGCCTGTTCCGGCAGTGGCAAAGCCGCCAGTCGTATCGAGCCC
TCAACGTGGAGGCTAGCTGGCGGCGGACGTTTGCGACGAGGATCATCCTG
CGGTCTTGGAGATCGTGAGTGAATACCTACGTAGAATATATACAAGCTGT
GAAAGTCCAACCCGCTTTTCGCCCATAGTATCACCTGCCTTGGGACTCTG
GCCTTTTCCGTTAGCTACTTTTACCACGACCGGTTTCAAGTGCTCTTCAT
CCAATGGCAACGTTTACGTGGAAGGTACACGCGGGTTCTGACGCACGTAT
TTACAACGTTGGCCCGGTTTCTGAAGGTCGTGCAGCTTGTTCTACCGTAG
CCAATCAATGACACGATCCTGTGATGAGTATTTACTAGCGCGATCAACGG
TTGTGTGTCTCGCCCGAAGTTGCCAATCATGCAAGGTGTCGGCTCTTAGC
TGTTGCTGTTGCTGTTGCTGTTGTTGTTGTTGTTGATGTTGATGTTGTTG
TTGTTGTTGATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTC
GTTGTCGTTAACTCCGTCGGGTGGGAAGTTATTCCATCGCTGCCAGATAT
TTCCGTAGAGAACACCCTTAGTCAAGATTCGATGGCGGAATGACATTGAT
GTCTGTTATAATCAAAGCACATGTGGCGAGAATCAAGCACCCATCCAACA
ACATGCCTGATGAGCTCATGAAAAGAAAGCACCCGCACACGTCCGCTGTG
CAGCCGCGGTAGCGTTAGTCAGTAGCACCATTTTCTTGTGTCTGTAAATC
TCTTTTCGTCGAGGTACAAAATGAACCTCGCCTTGGATGAGCTGAAGGAG
CAGTGGAGGGTGGAGAAGGCCGCTCTGGAGTTGGGGGGCGCACAGCGGGA
CATACAAGAAGTGAGTGTTTACAACATGTTTTGGAGGGTATTTAGTCTCC
GCTTTGAATGGTACAACTTGTGTTGCAAACGTTTGTTAGGCTTGAGGCTG
ACAACATGCGAACCCTAGTCTATATGGTGATCTTGACGTCGTCGTGCAAC
TGACGCCAAGGGGGTACGAGGCGCAGTTTTCGGCAAAAAGGTCGAGCAGG
GCGGGGGCGTTTCCGCCCATTCGTAGACTGGATGGATTGGGAGTCCCCTA
CTTCAGTTTGACTATATATGTGCTAGGTCAAATTCTCAAGTGGAAATGAA
GGTTAGACGTTAGAAGTGAATGCGCACGCTGCGTAACGTATACATACCGT
TGTCGTGGTACTGTGAGATTACCTGCATCTGCCCTTCGCACACATACGAA
AAATCAGGTTGTAACTTTGCCACAAATGCGCGCATTTCCGTTCTTTCCAC
CGACCACACCGGCCCCTTCTACCCTCTTGAAGTGTAAGAGTAAGCCTCGC
CAAAAATTATGTTCAACAAAACGGCGTATGCACGCACATCGTGAATTGTT
ATTGTACATAGAGTGTTGCGTTGTTTTCCTGTCTATCTGTGCGGAAGGAC
CAGCTTTATACTGCAATTGACGGGCAAAAACAAATCGTGAAGAATAAACA
GAAAAGCAAAAACGAAGCTGCCGGGAATTGAACCCGGATCTGATCCGTGA
CAGGGATCAATTCTAACCATTATACCACAGCTCCCATGGCAAGTTGGGAA
ATGTTTGGAATATAAACTATCCAAAACGTGCGTTCGCAACGGCAGCGATC
CTACAAGCACTACAGATGCACTTGTCGTGGTCCATGTATCTACTGCTATA
ATGTAACAAATCACGTCGCAGTGTATGCATAATTACCAGGAAGTTTTTGG
TATGAGAGGACACTTCACATGAATCAAGGCAGCAGAAAGAGCAGCAACAT
CCACGGTGACAGGTGTCAAAACAGTGCTGGCGGCTGCTAGCTCTGTGTAG
CATGTTCTACCTTTTAGATGCACCTGGTACGGCAGCACAGTAAAGTAGCG
AGAGATGTCGTTGTTGACCGATATGTATGTACTATAATCTGTCACACCAC
ATCACGAAACCACGACGTGCATGGCTGTTGTTGCTCTTGTGGACGCAGCA
TGCTTTCGTGAAAGATACCCGAAGTCCGGTTGTTGAGACCCTTGATCTTA
TGTACAAAGATCTGATCGATACTTCGGAATCCATCCGGTGGCATGCGTGC
CCTTCAGATATACATGTGCAAACGATGCGTCGCTTGAGCTATCTATCTGG
TTTGAGTACGTACGCAGGGTGGCATCAGGAGAGCTGCCCCCCCCATTGGA
TCAAAATCACAAAGAAGCCCCAACGTTCTCTTGCCCATAAGCTCAACGCG
ACCTCCCTGAAATGCGTACAGTATTCTTGTCCTAACAGGTAGACGTCGCT
GATGTTATATGGAGCCTTACGTGAACGCGTCCCCTTTCTCACACTCTTTT
TCTTGGTGCATCTGCGTTGACAGATCAAGGGCGATTTGGACCTCTGCACG
GACGACATCGCGGCGGTCAAAAAGTCTATCAGGAACGCGAAACGCCGGAT
CAAGGATCTTACAGAATTCAGAAAGGCGAGTCGCAACCTACAGCATAATC
CACCTTCGAGGATTTTGCCCGTCCCCTCCCCCTGCCCCGTCTGTCGTTGC
ATTTTGACTATTCTACGTTACATTTCGACTAAATATTCTGCAAGGCCTGT
AGTCTACAATACGGTTGGTTGTTGTAGCGGAAAAAACATACGAAAAGTGA
TCGCAATCTTTCTCTGAAGACTACAATACCCGGATGGACTGCGTTCACAT
GCAAACGCTTGCTCCGTGATTCGTCAGGTCCCACAGGAATATCGATCTGT
CACTGCACAACACAAATGTTTGTTTTGGGTACTATTTTTTTAATTTCAGT
TTGGGGGACGTAATGCCTCTACTGAAGTTTCTTGAACACCCGGTGGTTTT
GCGCCGTTGTTTATCGTGCTTGTTTCCACAGGAGGCCAGGTTGCGGCTTC
CACTGGTGGAACGGCAAATCGAGAACCTCACTGTCCAAGATATGGCAGGT
TGGGAGCATGGTGTAGAAGGCTTGGTGCTCTACAAATAGGTTGTGAAAAA
GTCTCATGTTCTGTTGAAGGTAAATGAGAAATATTGTCCTATCAACTGCC
AACACTCCGGCGCGAAAGGTCGGTGTAGACTATTTACAGTAGTACGTCAA
TTCCCCTCCATGCTCGTTCTTGGCGTTTCAAAATAAACTTAGAAGCGAAA
ATTCGGAATAAATTGGGACACCCGGCTGGGCAGATTTGAAAAATCACGCA
GAAAAATTGTCTCACGGTATTTTGTTCCGGCTCGTGTTCCTGTTTCTGCT
TATGTTGTTCCTCAATGCTTGTCAAGCTGGGTGGGGGGAGAACTACGAGA
GGGAGTGGGACATGCTGACCAACTGCATGGGCATGGCCTTCGAGGAAGAG
AAGATCATGCGTGTCAAGATCGCGAGGTTCGAACAAGATCTGCAAGTTCT
CAAGCTGGAGGTGGGACGTAACTGTTGTTGTGGTAGCTTTTCGTCCGTAA
ATATTAAAGTACTGTTTCATCGAACCGAAGTTAGGGTACTCTTTCAATGC
TCCGTCCTCTCGAGGACGTTCGGTCAATGGCCTAACCGCTAAGGCATGCA
AAACATAAGTGTACCACCCCCCCCCCCCCCCCCCACCCTTGTGCTTTTTT
CGATGTTCAGATTGACGACCAAGAGGCGGACATGGATGCGTCGTCTTGCA
GAGAAGCCAGCCGCATGGAAGCGTTACGCCGGATGGAGATCACGAGAGGT
CTCAACCAGGCAGCCAGGGACAGGACCAGGGCCGTACGCCAGGAGAAGAT
GCGTTGGGCCGTAAGTACATACCGCCGCTACAATAGCGGGTATCCACGTA
TCTGAGAAATGAGGGCGTTCAGTATTACATTGCAGGTGATGACCCGACAT
AAGGAAAACACTGTGAACAAGGCCGTAGAGCCGGTACGAAACGGCTGGAA
TCGCGAGGAACGTCTTTGTAGGTACTTGGCGCCCAGACCAGAACTCGGTG
TCAATATCTATTTTCCAATCCGCAACGTATTGGAGAATAACCGATTTTGT
GCGGCGTGTTTGGACGACCTATCTCTTGACGAGACTCAAATGAAAATTCA
ATTTACAGAACCCCCACGCGATCCTGTCCCAAGAACAGCTGTTAGTGTCC
CAACGCACCAGCAGAGAAGTTAAATGATGTACAGTTTCAGTGCAAACCAT
GCCCCTCTATGATTGGTATAACCATTGCCACATGTAGGTGAATCTTCAGC
AATATGTGCGCACACGGTCCGTTGGAAAACCTTGTCGATTGTAGCGCATC
AGTGGTTGGTCAGCACCGTACATCCCTTGTCTCGCACACACAATTCAAGC
GGTATTAGTCCGACCTCTGTCCACATGTTCGTGTTTTTTCACGGGTAGAG
CGTGGTGAAAAGTTTAGACTAGAGGCCGAGTTCGAAAGATTCCAGGACCT
ATGCTAGGCCGATGGTTAAAATAAGCCTTCACGCAGTACTCCGAACCTCC
CTTGAGAAGGTTCTTCCCTCGCACTTGCGCAATCAAGGCCGGTAGGTAGG
ATCTGCGGGAATCAAATTCTCCGTCCCAGCTTTGTGAGACTGCCGTGATG
GCCTGCGAAAGAAGACTTACCAATTCAACAAGGCCGTAGCCGATGTTTGA
TGGCAGTTCAAGGGCACGACATATCCCCGCCCCCCCGCCCCCTGCTCGCT
CGTTGCTTCGCATGTGGCAACCCTTTATTACGACGACGCCAGGTGAGAGA
CGTCCGTCGCAACGTTATCAAGCGATCGCGAAAAGATCTTCAGCGGTTCA
GGGAGCTGGCACGGGCCGAGCGCCCCCTCGAAGTCAAGGTGTGCGGCAGA
GGTCAATAGACATGTGGTGGTGATGGTGCTGTAGGTAGTGCTGCTGTCGT
CACCGTTGTCACCGTCTTGACGAGACAAAACGCTGTGATCACCAGTGAGA
GATGAATCCTGCGTTGAGCCAATACGTGTCTGTACCGGTTTGAGCTATAA
TACGGTAAATGAGGAAAAGAAGGGTACAACAAGCTTCGAACTTTGAAGGT
ATTCTTAATCTTCTCTGTCAACATGGCCTATCCCCCCTCCCCCCGAGAAA
GCTGTGGAAACAACCATTTGGCATGATGATCTTCTCACTTAACGCTCGGA
CAAACCCTCAACAACTGCGTTGCTCATTCGACGGCAGTAGCTGTGTATAC
TCGCACCACACTGGTCAGCAAGCAATCCCTTGTTCATTTGTTTGGAATCA
AGCGAACGAGAGGCGACGCACAACAAGGTTAACCCACCGCCCTGCACATC
TAAATACCTGCCTCCTTGATACATGCAGCAAACCTTGAGCTACGAGAAGC
GGCGAGATCAGGAGAGAGACGAGGAAGCGGAGGTCCGTCGGATGGAACGT
GATTCTCGAAAAGAACGGTAGGATGGATTGCATACACATCGGACCATGTT
TTGTCGTGATTTTGCTGAGACAATCCAGGGAAAGTGCTAAACGTTGACAA
GGTTTCTTGAGCCGCAACACTATTTCCTTCCAACAGCTTCTTGTGTCTGA
ACTTTGCTACCCTTTCGGATGATGGTACACCTCAAGAAGTAGCAAGGCTA
CCCGAAAGCCCAGTCTTCCACATCTCATCAACCTCCGCCGTTGAAGGTTT
GATTACCCTGCCGTTTTTTATGGCTCATCTTCCGACCCCTTCCGCACTAT
TATACTACCTTCCTGGAGGTTTGTGGAGCTGAAGAAGAATGGGGAAGGCA
GCCTCGCCGTCAGAGAGGTCTACGACGCTGTGGTAAGCATCGCCTATTGC
TTTTTGATTTTCGGCATCGATTTTTCTTCTTCAACCACAACCGTGCGGGG
GCGTTTCTTGCCCACAGCAACCCGTCGTCACGACGTCGTGCTTGGACCCC
AAAAGAAGTCCACGATTGCCCCTTTACAACAGGAACACCAACTCCCTTAT
CTCTTCCTTGTTTGCCTTTCTACTGCACGAACCACACACATGCACAGATA
TCTGGGGTCCGAGATATTCTCGCCACCGCAACCTTCGAAGCCCGTCGTGC
GAAACACGACTACCGGGGACGAGGCCCCGACGAGGTAAAGCTAACCTACC
ACACTGTAACAACAACAACAACAACAACAACATACTTCATGGAGAGGGGA
GCAGGCGCGGGGGGGTAGGAGGGGACTTTTTTTTATTGTGTCTCTGTGGC
TACCGACCTGTTGTTTTGTTTGATCGATGGTTTCCCATGGAAACGACGCA
GAGGCGTGGCATTCACACAGCCCGTGATGATTTGGCGTATTCACCTTCCT
CGTTGTTGTTGTATCGAGGACAGGAGACTTCCTGAAGCCACACCAACCTT
CATCGAACACGATCCACTGCGGCACACGAAGCGGCAGCAATCTCTAACAA
AGGAGCAACGCTATTTACGTTCTTGTGTAGCTCCGATGCATGGCTCCTTG
TTTTCATCTGACCTCATACATCGTCTTACAGCTTCAGCCACAACCTCGCT
CGAAATATACAACAATCAGGTTGGCCCAGCGGCATCGGCGGCCGCCACAA
CCGCCGCATCAGTCGCCAGAAAGGCTGCGATCGCCGCGGCAAGGCGTGGT
GGGGGCAGCGGCGACAGTCCGGAGGATGCAGCCGACGCAGAGAACGCAGC
GTCGATAGCGGCAGCGGCGGCAGCGGCGGCGGCGTCGACCACCGGGATGG
CCGAGCTCGGCGGGGGAAGGGTGTGTCGCGCTTGCGGGGGGCCCAGGTTT
GGACGCACCGTCTGTGCCAAGTGCGGGGCGAACGCGAATAGCTGGCGGGG
GGAGGTCGTTTCCGGAGGAGAAGAAGAAGAAGACGAAGATGCCGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74:35545..43143-

>mRNA_Ecto-sp13_S_contig74.18581.1 ID=mRNA_Ecto-sp13_S_contig74.18581.1|Name=mRNA_Ecto-sp13_S_contig74.18581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1086bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74:35545..43143- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCTACTGAAGTTTCTTGAACACCCGGTGGTTTTGCGCCGTTGTTT
ATCGTGCTTGTTTCCACAGGAGGCCAGGTTGCGGCTTCCACTGGTGGAAC
GGCAAATCGAGAACCTCACTGTCCAAGATATGGCAGCTGGGTGGGGGGAG
AACTACGAGAGGGAGTGGGACATGCTGACCAACTGCATGGGCATGGCCTT
CGAGGAAGAGAAGATCATGCGTGTCAAGATCGCGAGGTTCGAACAAGATC
TGCAAGTTCTCAAGCTGGAGATTGACGACCAAGAGGCGGACATGGATGCG
TCGTCTTGCAGAGAAGCCAGCCGCATGGAAGCGTTACGCCGGATGGAGAT
CACGAGAGGTCTCAACCAGGCAGCCAGGGACAGGACCAGGGCCGTACGCC
AGGAGAAGATGCGTTGGGCCGTGAGAGACGTCCGTCGCAACGTTATCAAG
CGATCGCGAAAAGATCTTCAGCGGTTCAGGGAGCTGGCACGGGCCGAGCG
CCCCCTCGAAGTCAAGCAAACCTTGAGCTACGAGAAGCGGCGAGATCAGG
AGAGAGACGAGGAAGCGGAGGTCCGTCGGATGGAACGTGATTCTCGAAAA
GAACGGTTTGTGGAGCTGAAGAAGAATGGGGAAGGCAGCCTCGCCGTCAG
AGAGGTCTACGACGCTGTGATATCTGGGGTCCGAGATATTCTCGCCACCG
CAACCTTCGAAGCCCGTCGTGCGAAACACGACTACCGGGGACGAGGCCCC
GACGAGGTTGGCCCAGCGGCATCGGCGGCCGCCACAACCGCCGCATCAGT
CGCCAGAAAGGCTGCGATCGCCGCGGCAAGGCGTGGTGGGGGCAGCGGCG
ACAGTCCGGAGGATGCAGCCGACGCAGAGAACGCAGCGTCGATAGCGGCA
GCGGCGGCAGCGGCGGCGGCGTCGACCACCGGGATGGCCGAGCTCGGCGG
GGGAAGGGTGTGTCGCGCTTGCGGGGGGCCCAGGTTTGGACGCACCGTCT
GTGCCAAGTGCGGGGCGAACGCGAATAGCTGGCGGGGGGAGGTCGTTTCC
GGAGGAGAAGAAGAAGAAGACGAAGATGCCGTGTGA
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