mRNA_Ecto-sp13_S_contig74.18580.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74.18580.1
Unique NamemRNA_Ecto-sp13_S_contig74.18580.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74.18580.1 vs. uniprot
Match: A0A6H5KAK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK1_9PHAE)

HSP 1 Score: 623 bits (1606), Expect = 1.980e-219
Identity = 347/404 (85.89%), Postives = 359/404 (88.86%), Query Frame = 2 
Query:  437 VGVVMGCGCSTHKRRVAAAKKEEDQGTSVQAVGTLTPTTPKASPDTNRPTPAPSPPKQQREFLKGMSPSSSSGGDISLGPSPVTPESANVLVATGTPPPSVSHEKGSDIAPKSDGAVTLMGMASSKGDHQSGEAETGAIKDETEKKEGRTSRKRSIKLVSQPGEPQVRLPRLSNQDSLPQIVPATRGSADLLGILSRGNTLGPGLDTAFREDPTDIVIPTETATAVAGRDSGATSSSDKCGEDGPTEVIETPATHTSDNTINEELVMTPITPEDTLDEDVLDEQRPVKDRWPRKNRARESPEPTRSRGHHNNXXXGPPPRLEARPALAAGVSVEVNTATDSSNHGGRGSLSVVDFPDDDPYNDLSAGGGLHSSDAGETWGEKSGALSLLDADEEDFMETLLMES 1648
            VGVVMGCGCSTHKRRVAAAKKE DQGTSVQ VGT TPTTPKASP  N+PTPAPSPPKQQREFLKGMSPSSS GGD  LGPSPVTPESANVL ATGTPPP+VSHEKGSD AP+SD AVTL+G+ASS  DH+ GEAETGAIKDETEK+EGR SRKRSIKLVSQPGEPQVRLPRLSNQDSLPQIVP TRGSADLLGILSRGNTLGPGLDTAFREDPT IV+PTE ATAVA  DSGA SSSDK  ED PT VIE PATH +DNTINEE VMTP+TPEDTLD+ VL+EQRPVKDRWP  NRARESPE TR RGH   XX GPPPRLEARPALAAG   EVNTATDSSNHGGR SLSVVDFP DDP NDLSAGGGLHSSDAGETWG  SGALSLLDADEEDFMETLLMES
Sbjct:   38 VGVVMGCGCSTHKRRVAAAKKE-DQGTSVQTVGTFTPTTPKASPHANKPTPAPSPPKQQREFLKGMSPSSSFGGDT-LGPSPVTPESANVLAATGTPPPTVSHEKGSDTAPESDVAVTLVGVASSNSDHRLGEAETGAIKDETEKEEGRMSRKRSIKLVSQPGEPQVRLPRLSNQDSLPQIVPTTRGSADLLGILSRGNTLGPGLDTAFREDPTYIVVPTEAATAVAAHDSGAISSSDKRSEDRPTGVIEIPATHRNDNTINEEFVMTPVTPEDTLDKGVLEEQRPVKDRWPWNNRARESPETTR-RGHXXXXXDGPPPRLEARPALAAGAPGEVNTATDSSNHGGRRSLSVVDFPGDDPCNDLSAGGGLHSSDAGETWGATSGALSLLDADEEDFMETLLMES 438
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74.18580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAK1_9PHAE1.980e-21985.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74contigEcto-sp13_S_contig74:29902..34051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1651
Hectar predicted targeting categoryother localisation
Exons6
Cds size1203
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74.18580.1prot_Ecto-sp13_S_contig74.18580.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74 30350..34051 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464008.9817908-UTR-Ecto-sp13_S_contig74:29901..303491681464008.9817908-UTR-Ecto-sp13_S_contig74:29901..30349Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig74 29902..30349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464008.9953809-CDS-Ecto-sp13_S_contig74:30349..304001681464008.9953809-CDS-Ecto-sp13_S_contig74:30349..30400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 30350..30400 +
1681464009.005387-CDS-Ecto-sp13_S_contig74:30902..313371681464009.005387-CDS-Ecto-sp13_S_contig74:30902..31337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 30903..31337 +
1681464009.0180833-CDS-Ecto-sp13_S_contig74:31647..319381681464009.0180833-CDS-Ecto-sp13_S_contig74:31647..31938Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 31648..31938 +
1681464009.033127-CDS-Ecto-sp13_S_contig74:32495..326231681464009.033127-CDS-Ecto-sp13_S_contig74:32495..32623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 32496..32623 +
1681464009.0461166-CDS-Ecto-sp13_S_contig74:33277..335081681464009.0461166-CDS-Ecto-sp13_S_contig74:33277..33508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 33278..33508 +
1681464009.056971-CDS-Ecto-sp13_S_contig74:33984..340511681464009.056971-CDS-Ecto-sp13_S_contig74:33984..34051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 33985..34051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74.18580.1

>prot_Ecto-sp13_S_contig74.18580.1 ID=prot_Ecto-sp13_S_contig74.18580.1|Name=mRNA_Ecto-sp13_S_contig74.18580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=401bp
MGCGCSTHKRRVAAAKKEEDQGTSVQAVGTLTPTTPKASPDTNRPTPAPS
PPKQQREFLKGMSPSSSSGGDISLGPSPVTPESANVLVATGTPPPSVSHE
KGSDIAPKSDGAVTLMGMASSKGDHQSGEAETGAIKDETEKKEGRTSRKR
SIKLVSQPGEPQVRLPRLSNQDSLPQIVPATRGSADLLGILSRGNTLGPG
LDTAFREDPTDIVIPTETATAVAGRDSGATSSSDKCGEDGPTEVIETPAT
HTSDNTINEELVMTPITPEDTLDEDVLDEQRPVKDRWPRKNRARESPEPT
RSRGHHNNDNDGPPPRLEARPALAAGVSVEVNTATDSSNHGGRGSLSVVD
FPDDDPYNDLSAGGGLHSSDAGETWGEKSGALSLLDADEEDFMETLLMES
*
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mRNA from alignment at Ecto-sp13_S_contig74:29902..34051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74.18580.1 ID=mRNA_Ecto-sp13_S_contig74.18580.1|Name=mRNA_Ecto-sp13_S_contig74.18580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74:29902..34051+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGATGTATGTGCGTGTCTTTGTTGTAGCGTGTGCGCGCGATTTCCACTAG
TATCGACTGGCTGCTAATGGGCTGGTCATTGAAGAGACCTTAGTCTTATG
TTGGCCAAGAAACGTAGCATATAAGCCCAAGGGCGCCGCTGATTTGTTGC
TGACTGTTGTCGTCGCTGTCTTTTCGTCGGTAGACAAGAGAGTTGGTTGT
GGACGTGCTTGTCCTAGCGCGTACCAAAGTCTAGCAGACTGGAGTAGCAA
TGCTACGTGTTGTACATAGAAAGTTGGAGCGCAGTATCATCCGGTGAGGT
ACGGGGCTATATTGCAGCGTATACAACTGATTGTACCGGAAACGAGAAGC
AGTTGGACTCGGGAAAACGAGCGCGAACTTCAGCACCCATTCAACTCTCG
GGCGCACTGGCTCTAGGGGCCTGTGGGGACGTCGTCGTGGGTGTTGTGAT
GGGGTGCGGGTGCTCGACGCACAAAAGGCGTGTCGCTGCTGCAAAAAAGG
TGTGGATGTCATAGTTGTCCCAATCCTATGTGGATAGAGTAATGTGCCAA
TCCAAAGTGCTTGTCGTACAGCATATCGCTGCTGTGTCATTGCTGGTGGT
GTGCCCTATGTCTAGACTATGTAGAACACATGCAGAGTTGTAGGAGGTGC
TTGTTTCGGCAGCAAAAGTCGCCGTGGTTTTCATCTCGGGGCGTTGCGTT
CCGGAGTCTGCAAGAAAAAACTTGCACTTATGCAATTACTGACCGTCAGC
AGTAGATGACCCCTGTTACCCTGTACGCTTTCGTTTGATACACGGGTTAA
GTATCGTCCATTCGGGATAGATCAGACTTCGTGAGAAGTTTTCCGTGGTC
CTCGGCGATCCCTATTAACCCCTCCTGAACACTCATCGGCATAACTGGTA
GCCTACGTAACTCACACGGCGGTGGTTCCCGAGCAACCTTATTATGGCAA
ACCTTCCTGACTGTCGCCTGCGTTCGAAAATGATGATGTTTACGTTGCGA
GGAGGAGGACCAAGGAACCAGCGTGCAAGCGGTCGGTACGCTCACCCCAA
CAACTCCAAAGGCAAGCCCTGACACAAATAGACCCACTCCAGCGCCATCA
CCACCGAAGCAACAGCGTGAGTTCCTGAAGGGGATGTCACCGTCGTCATC
CTCCGGGGGGGACATTTCGTTGGGACCATCCCCGGTGACTCCGGAATCGG
CGAATGTGTTAGTCGCCACTGGCACACCGCCACCGAGCGTATCGCACGAA
AAGGGGAGCGATATTGCACCAAAAAGCGACGGTGCTGTAACGTTAATGGG
GATGGCGTCTTCAAAGGGTGATCACCAATCGGGTGAAGCTGAGACAGGCG
CGATCAAGGATGAGACGGAGAAAAAAGAGGGACGTACGTCGAGAAAGAGG
TCTATCAAGTTGGTATCACAGCCTGGAGAGCCTCAGGTACAAACGGGGGC
CGTATCTCGGCATATGTTACATATGCTAACCAGGAAGGCTACCGATATTG
CTAGTATCAGCTGTCAGCAAACACTTGGCCTGGAATACACATCTTTTGAA
ACCCACACAAAATAAACTACCAAGATTGATCAGCTCTTCCAAATCAGCGG
GCGTGTACCCGAGCCGCCCCCCCCATTTCTTGAAGAACCCTTAGTTAGGC
AACTTGCTCGTAGGCGAACACACGAATCCTCCACCGTGAAGCGTCGCGTC
AATAGCCAATAGCAACGACCCCTTTTTCAAAACACACGGAATGCAGGTCC
GGCTTCCAAGACTCTCCAACCAAGACAGCTTGCCGCAAATAGTGCCGGCA
ACCAGAGGTTCTGCCGATCTTCTTGGCATACTCAGCAGAGGAAACACGCT
CGGGCCGGGTCTCGATACCGCTTTTCGGGAAGATCCTACCGACATTGTGA
TCCCTACCGAGACCGCCACCGCCGTTGCCGGCCGCGATAGCGGGGCCACG
AGCAGCAGCGACAAGTGCGGCGAGGATGGGCCAACAGAAGTGATTGAAAC
CCCGGCGACACACACGAGTGATAACACGATCAATGAGGTGAGAGCCAAGC
TCAACTTCTTGCCTCGGAGTATTCCAGGCAGCGGTCGTACGGTTGCCGAA
AGTGCTTGTGTTGCCCACTGTCGCAAGATGAGCGCACCGGATGCTCAATC
CACCAGCACTGCCACGGGATCAGCCTCTGTTTGCTCGCTTCGTCCTTGAC
AAAGGAGAGAGCGTATGTCGCACACGTTCATGTAGCTTTCGACATCACGA
AACTTCAAAACTCCCTCCAAAGAACCAGAATACGACCAGAGTAAAGCATT
CCTGATTCCGTCCTCTTCCTTGCTCTTCTTGTTTGTGGGACCTGGACACA
TAGCCTGTCGGCGAAGGGTTTGGTTTGTGCGGAACCACGAGCGTTCTGGG
TCCATCACCGTGTCTCGAAACGGCGGCGGTAGCACCGACTCAACACATTC
ATGAACGACTTATTGCCTGGGGAGATGTCGGAATATGTTGACGACTGGTC
CAATTCGACCAAGTTCGATCGACTGCTAGTACATATGGCAACCCCTGATG
TGACTTTGGAACCTTGTTTGGGACAACATGATGATCTTCTGCAGGAGTTA
GTCATGACCCCCATAACGCCGGAAGACACACTCGACGAAGACGTCCTCGA
CGAGCAAAGGCCTGTGAAGGATAGATGGCCACGGAAAAATCGAGCAAGGG
AATCTCCTGAACCGACCAGGAGGTGCGCTTGTGCGTGATGCGTACTCACT
CGCACACCCTCACGAGAAACAAGCTTGCTTACCGTAGCGTGGTCCAATAA
TCGGAAATCATTGGCTTGTTTGTAGCATTTTTTTTCACACGTACAAGGAA
CATCGTGTTCCATACCGGAGTCGTCGGTATGTACGTAAGCGTAAGGACTC
AGGGCGCCAGAGCCGCACGAGTGCATGTTCAATTTCTTGCCGAGATTTTC
CAACGTGTCACCGTTCGGCGCTGGGCACTTACGCGTGATAGAGGTGTAAA
ACGAGAAACGCGGTCGCACTTTGGTGAGTGAAACCAAGCACAACTACGGT
GTTGCGACCAAGACACGCAATTGGAGTTTGAATGGGTGAAAAATGTCAGG
CTTGCTTGTAGCAGCAGACGTGTGAAAACTCCACCAGATCTCTGTGAGTC
AATGTGATACCAACATGGTGTGTGCCGCGCCTTGGCTGAAGAAATAATCC
ACAAGACGTGGTATGCTGTAGGATGCGGCATGGGTGCCGGCCAGCGTACG
CGGACTTTCGGCATCAGCCTGCCGAGACTGGCCGCTGATGCTCTGCAGGC
ATCAGGTCCTGACAACCAGTAAAGTAACCATCGAGGTTTTTACTTTTTGG
CGCGAATCTTTACCTCCTTCCATCAGCAGGGGGCACCACAACAACGACAA
TGACGGACCTCCTCCCAGGCTAGAGGCGCGGCCAGCTCTCGCAGCAGGGG
TTTCTGTGGAGGTGAATACAGCCACAGATAGCTCCAACCACGGCGGGAGG
GGGAGTCTTAGCGTAGTCGATTTTCCAGATGACGACCCCTACAATGATCT
TAGTGCTGGGGGTGGACTGCATTCTTCGGATGCTGGCGAGACGTGGGGAG
AGAAGAGGTGAGAGTAGCCGGCGCGCGACATCTTTCCGTCCTATTAGTAT
TGCCGTCCTTCGCACCCGAGCGTTCCCTTCGCGCGGGGGCGATTCTTGGC
AGCTCTCCATTATCTGTGAACAACGAAGCTAACTTATACAGTTTGATACA
AGAATTATCCGAGACAAACTGCGGGCGTTTTGACTACGTTCCGTATATTC
AGTAAAATTTAAAGGGTTTTGAACAGTCCTCGAACTTCTCTACTTCCTTG
GGTTTGAGAAACAACAACATCGATCCACAGTCCACCCTCAACGTGCCCGT
GTAGTTGCTACATACACAAGCCTGCTGTTGTGCTCGTTCCATAACGTCTG
CAAAGTATCCTTGATTCTCCACCGCCGGTCACAATGAAGAAAATTTTGCT
TCCGTGTATGGCTGTTGTACCAGCAGATAAACAAGTACCTCCGATTCGTT
GCGTACGTTCCTCTCTCCTGTTTCTATCGGCAGCGGAGCTTTGTCACTGC
TGGATGCGGACGAAGAGGATTTCATGGAGACCTTATTGATGGAAAGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74:29902..34051+

>mRNA_Ecto-sp13_S_contig74.18580.1 ID=mRNA_Ecto-sp13_S_contig74.18580.1|Name=mRNA_Ecto-sp13_S_contig74.18580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74:29902..34051+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGTGCGGGTGCTCGACGCACAAAAGGCGTGTCGCTGCTGCAAAAAA
GGAGGAGGACCAAGGAACCAGCGTGCAAGCGGTCGGTACGCTCACCCCAA
CAACTCCAAAGGCAAGCCCTGACACAAATAGACCCACTCCAGCGCCATCA
CCACCGAAGCAACAGCGTGAGTTCCTGAAGGGGATGTCACCGTCGTCATC
CTCCGGGGGGGACATTTCGTTGGGACCATCCCCGGTGACTCCGGAATCGG
CGAATGTGTTAGTCGCCACTGGCACACCGCCACCGAGCGTATCGCACGAA
AAGGGGAGCGATATTGCACCAAAAAGCGACGGTGCTGTAACGTTAATGGG
GATGGCGTCTTCAAAGGGTGATCACCAATCGGGTGAAGCTGAGACAGGCG
CGATCAAGGATGAGACGGAGAAAAAAGAGGGACGTACGTCGAGAAAGAGG
TCTATCAAGTTGGTATCACAGCCTGGAGAGCCTCAGGTCCGGCTTCCAAG
ACTCTCCAACCAAGACAGCTTGCCGCAAATAGTGCCGGCAACCAGAGGTT
CTGCCGATCTTCTTGGCATACTCAGCAGAGGAAACACGCTCGGGCCGGGT
CTCGATACCGCTTTTCGGGAAGATCCTACCGACATTGTGATCCCTACCGA
GACCGCCACCGCCGTTGCCGGCCGCGATAGCGGGGCCACGAGCAGCAGCG
ACAAGTGCGGCGAGGATGGGCCAACAGAAGTGATTGAAACCCCGGCGACA
CACACGAGTGATAACACGATCAATGAGGAGTTAGTCATGACCCCCATAAC
GCCGGAAGACACACTCGACGAAGACGTCCTCGACGAGCAAAGGCCTGTGA
AGGATAGATGGCCACGGAAAAATCGAGCAAGGGAATCTCCTGAACCGACC
AGGAGCAGGGGGCACCACAACAACGACAATGACGGACCTCCTCCCAGGCT
AGAGGCGCGGCCAGCTCTCGCAGCAGGGGTTTCTGTGGAGGTGAATACAG
CCACAGATAGCTCCAACCACGGCGGGAGGGGGAGTCTTAGCGTAGTCGAT
TTTCCAGATGACGACCCCTACAATGATCTTAGTGCTGGGGGTGGACTGCA
TTCTTCGGATGCTGGCGAGACGTGGGGAGAGAAGAGCGGAGCTTTGTCAC
TGCTGGATGCGGACGAAGAGGATTTCATGGAGACCTTATTGATGGAAAGT
TGA
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