mRNA_Ecto-sp13_S_contig74.18578.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74.18578.1
Unique NamemRNA_Ecto-sp13_S_contig74.18578.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74.18578.1 vs. uniprot
Match: D7FMH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH3_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 8.150e-46
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 1 
Query:  109 GAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRAKELSASIGSGQGSEAKGGRTAGGNXXXXXXXXXXXXXXXXXXXXEPIEYTDASGKLKFNKRPVSAAAVGXXXXXXXXXXXXXXXXXXXXXXXXSNAKLLSFGDDEDG 534
            GAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRA+ELSASIGSGQGSEAKGGRTAGGNXXXXXXXXXXXXXXXXXXX EPIEYTDASGKLKFNKRPVSAAA GXXXXXXXXXXXXXXXXXXXXXXXXSNAKLLSFGDDEDG
Sbjct:   37 GAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRARELSASIGSGQGSEAKGGRTAGGNXXXXXXXXXXXXXXXXXXXEEPIEYTDASGKLKFNKRPVSAAAGGXXXXXXXXXXXXXXXXXXXXXXXXSNAKLLSFGDDEDG 178
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BLAST of mRNA_Ecto-sp13_S_contig74.18578.1 vs. uniprot
Match: A0A6H5KEF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.340e-15
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:  109 GAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRAKELSASIGSGQ 246
            GAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRA+ELS SIGSGQ
Sbjct:  101 GAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRARELSVSIGSGQ 146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74.18578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMH3_ECTSI8.150e-4697.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEF2_9PHAE2.340e-1595.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74contigEcto-sp13_S_contig74:21477..23780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1263
Hectar predicted targeting categoryother localisation
Exons2
Cds size537
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464008.7503781-CDS-Ecto-sp13_S_contig74:21476..217221681464008.7503781-CDS-Ecto-sp13_S_contig74:21476..21722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 21477..21722 +
1681464008.7612932-CDS-Ecto-sp13_S_contig74:22763..230541681464008.7612932-CDS-Ecto-sp13_S_contig74:22763..23054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 22764..23054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464008.7758243-UTR-Ecto-sp13_S_contig74:23054..237801681464008.7758243-UTR-Ecto-sp13_S_contig74:23054..23780Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig74 23055..23780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74.18578.1prot_Ecto-sp13_S_contig74.18578.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74 21477..23054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74.18578.1

>prot_Ecto-sp13_S_contig74.18578.1 ID=prot_Ecto-sp13_S_contig74.18578.1|Name=mRNA_Ecto-sp13_S_contig74.18578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
MPGRGRGRDRDSNQAAAEGSGGSGGGGAAGGGGGSGGAFEDYDEEEVAAL
EAYMKTHPSKEEDKEALRKRAKELSASIGSGQGSEAKGGRTAGGNGGAAG
VGSAAGAPKAPSPPEEPIEYTDASGKLKFNKRPVSAAAVGAAGKSGESGK
GSKKKTKRAKLAKLSNAKLLSFGDDEDG*
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mRNA from alignment at Ecto-sp13_S_contig74:21477..23780+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74.18578.1 ID=mRNA_Ecto-sp13_S_contig74.18578.1|Name=mRNA_Ecto-sp13_S_contig74.18578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2304bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74:21477..23780+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGGGCGAGGTCGTGGCCGAGACAGAGATTCCAACCAAGCCGCAGC
GGAGGGCAGCGGTGGGAGCGGAGGGGGAGGGGCGGCAGGCGGCGGGGGCG
GGAGCGGAGGTGCCTTTGAGGACTACGACGAAGAAGAGGTGGCAGCTTTG
GAGGCGTACATGAAGACGCATCCCAGCAAGGAAGAAGACAAGGAGGCCTT
GCGAAAACGGGCAAAAGAACTCTCTGCTAGCATAGGCTCTGGTCAGGTGA
TGAGGTGCCCCGCGGTTGTGTGGACGCGTACCATGTTCGTCCCAAGCAAC
TGAATGCAGTTCGCGATGCTGTGGGGCGCTTGGGATGCACAGAAAACCGC
CAACTAAAAGGAGTATTGCAGTCGCTCGTTGGCTTCTCGAGCGCTACCCG
GATTCGCATTCAGCGTCGACTGTTGCTTTGAGGAAAAAATAGTTGAAAAC
GCGTTTGTGCGAGGCATGGAACCCTTGTACACCGAAGCGGACGGCAACCC
GATGTAGTCGGCACACTCGAAATAGTGTGAGGTTCCACTGCGAGACTCAT
AACAGTGTGGCCACGCCCCTTGAGGCAATACAAGGTTTGCTCGGTCAAAA
TAATTATTTTGGCCGGCGGCCGTTGAATGTCATTGGAATGGTGGCTGTAA
CCCGCAGTCCCGTGTGCAGTATCCCGTCATTGTTCAACATAAATCAGTCA
TCAGCAGCCGTGGTCAGAAGTTGTGCAGTCCCCACCTACTCAACCGATTC
CCTCAACCCTTTGCGATAGCGGTTTTTATCCCGTTGTAATTTCTTAGTTT
ATAAGTGGTGAGCAATTATGAATTCTATCACGCTTTTCACCTCAGCAGCG
TGCATGGGGGATAGACGATAGATGTGTGGGCGTCGGATGCACATGCGTAT
CTGACGTACTGTAGCAGCAAATGTATTCTTGGCCATGTGTGAGAGTGAGA
GTGAGATGTGTGCAGACAAACGTACGTGATGACGAGCAGGGGTTTGTTGC
CGACGTGGCGCATTTTTCCCGTAGCTCAATGTGACGGCGTTCGCCAAAGC
ATGCGTGCCACACTGGCTAATAGCACCCCTAGCGGGTAGCGGTACGCTGG
CCTCATCTGGTACATAATTGACCCCGAAGGTGCGAGCGGGTTTGGTCCTC
AAAGCTCCATAGTATTGGAATACAAGGGGTTCCTTCTCGTGCGCGTCTAC
CGCTCATGACTATTCGGGACGAAAAGTTTTGAAAAGATTCGTGCACGCTC
ACACAAACGTCGGGATTGCCGCTCCCATATGGTGCAGGGTTCAGAAGCAA
AGGGCGGCAGAACAGCGGGGGGAAACGGGGGCGCGGCAGGAGTAGGGTCG
GCAGCGGGTGCACCCAAAGCACCGTCTCCCCCAGAAGAGCCTATCGAGTA
CACAGATGCATCGGGGAAGTTGAAGTTCAACAAGCGGCCCGTTTCTGCTG
CGGCGGTTGGGGCGGCAGGCAAGAGTGGGGAGAGTGGCAAAGGATCCAAA
AAGAAGACCAAGCGGGCGAAACTAGCCAAGCTGAGTAATGCCAAGCTGCT
GTCTTTCGGAGATGACGAGGACGGATGAGCATAGTTGAGGTGGATCTTGG
CGAGCAAGATACCGTGCTGCTGGTGCTGATCGATTAGCTGCAGTGACTGT
CGACACGGTCGAAGGTTCGGTGTCAAGGACTGGCTGACTCTAGGCGCGTG
TCCCCAACAAGTTTGTTGGAAGTGGCGGCGGGCGCGGTAGCAGTAGCGGA
AACAGCTGAGTGAGTTCAAAGCTACCCACAGGCCCATTGACATACCAGTT
TGTGTGAGGCCGATCAGGATTGCGTGGTGTAGTTCGGTCATGCCACCCAT
ATGAGCTGCAGATAGGCCTGAGATACGCTGCTTGTGGATCGAAGTCGAAA
AATTCTGTAAATACCGAGATCTGTCAGTATATCGCAGCAGCAAGGAGACG
CGTGAAAATACAAGTTTGAAGAAGACCCTCTCCCTCTCTACCGCTGCAGA
GTGTGGTGGTAGGAGAGTCGGCCCTCTCACGTCACGCGAAGCTGATGCTA
AGACTGAGGCTCACTCTCTTGTACACGTCTGTAGGTTTGTATTAACCACT
ACGTAGGCTTTGCGAGGCAGCACTGTATGTACTTGTGAAACGGCCAACGC
TACTGCAGCTAGTCTCGGTTGAGTACTACGAGGCAAGGTTGCCTGAGCGG
TGCAAGAATTTATGAATTGGGTCTCAACAGCTTCTAGGCAGAGCGCATGT
AGCATAATCGGGAAGAACGTGCAATCTCATAGCCGTGCACATTTTTGAGT
ATTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74:21477..23780+

>mRNA_Ecto-sp13_S_contig74.18578.1 ID=mRNA_Ecto-sp13_S_contig74.18578.1|Name=mRNA_Ecto-sp13_S_contig74.18578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74:21477..23780+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGGGCGAGGTCGTGGCCGAGACAGAGATTCCAACCAAGCCGCAGC
GGAGGGCAGCGGTGGGAGCGGAGGGGGAGGGGCGGCAGGCGGCGGGGGCG
GGAGCGGAGGTGCCTTTGAGGACTACGACGAAGAAGAGGTGGCAGCTTTG
GAGGCGTACATGAAGACGCATCCCAGCAAGGAAGAAGACAAGGAGGCCTT
GCGAAAACGGGCAAAAGAACTCTCTGCTAGCATAGGCTCTGGTCAGGGTT
CAGAAGCAAAGGGCGGCAGAACAGCGGGGGGAAACGGGGGCGCGGCAGGA
GTAGGGTCGGCAGCGGGTGCACCCAAAGCACCGTCTCCCCCAGAAGAGCC
TATCGAGTACACAGATGCATCGGGGAAGTTGAAGTTCAACAAGCGGCCCG
TTTCTGCTGCGGCGGTTGGGGCGGCAGGCAAGAGTGGGGAGAGTGGCAAA
GGATCCAAAAAGAAGACCAAGCGGGCGAAACTAGCCAAGCTGAGTAATGC
CAAGCTGCTGTCTTTCGGAGATGACGAGGACGGATGA
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