mRNA_Ecto-sp13_S_contig74.18577.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74.18577.1
Unique NamemRNA_Ecto-sp13_S_contig74.18577.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74.18577.1 vs. uniprot
Match: A0A6H5KEF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF2_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.610e-31
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 2 
Query:  122 MARGGKGGKGPKPAFTRVIPKFLQQYETMLTGPKPQEGPDNEVTFSGGGDFTDGGGGSSSGKSG 313
            MA+GGKGGKGPKPAFTRVIPKFLQQYETMLTGPKPQ+GPDNE TFSGGGDFTDGG   SSGKSG
Sbjct:    1 MAKGGKGGKGPKPAFTRVIPKFLQQYETMLTGPKPQQGPDNEETFSGGGDFTDGGXXXSSGKSG 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74.18577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KEF2_9PHAE1.610e-3190.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74contigEcto-sp13_S_contig74:20682..21476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size313
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464008.3440328-UTR-Ecto-sp13_S_contig74:20681..208021681464008.3440328-UTR-Ecto-sp13_S_contig74:20681..20802Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig74 20682..20802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464008.3537283-CDS-Ecto-sp13_S_contig74:20802..209151681464008.3537283-CDS-Ecto-sp13_S_contig74:20802..20915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 20803..20915 +
1681464008.3664367-CDS-Ecto-sp13_S_contig74:21397..214761681464008.3664367-CDS-Ecto-sp13_S_contig74:21397..21476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74 21398..21476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74.18577.1prot_Ecto-sp13_S_contig74.18577.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74 20803..21476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74.18577.1

>prot_Ecto-sp13_S_contig74.18577.1 ID=prot_Ecto-sp13_S_contig74.18577.1|Name=mRNA_Ecto-sp13_S_contig74.18577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MARGGKGGKGPKPAFTRVIPKFLQQYETMLTGPKPQEGPDNEVTFSGGGD
FTDGGGGSSSGKSG
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mRNA from alignment at Ecto-sp13_S_contig74:20682..21476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74.18577.1 ID=mRNA_Ecto-sp13_S_contig74.18577.1|Name=mRNA_Ecto-sp13_S_contig74.18577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74:20682..21476+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAGCGTCAGGCTTTTAACTCTTACAGTCCCGTAAGCGAGCGCGCCGCA
GGCCGTACGTGAGAGAGAGACAGCGCGAGACAGCAGTACAACAGAGTTTG
CGAGATTACAAACACGTTACCATGGCGAGAGGGGGAAAAGGAGGGAAAGG
ACCAAAACCTGCCTTCACCAGGGTGATCCCGAAATTTCTTCAACAGTATG
AGACTATGCTAACGGGACCCAAGCCACAAGAAGGGTGAGGCAAATGAGAG
AGAGAGAGAGAGAGAGATGGTGCAGCAGTAGACTATGTCAAGCTGGCATG
GGGAGAAGCAGCGAGAGAGAGGGGGGGAAGGAGGGAAGCAGGAGGTACAG
GGTGAAGAGAGAGGTATGTACGTTCAAATGTAGGCATAGGGGAGACAACT
GGCATTCCGGGTATCATCGGTAGATTGAATACATTAATCCTTATTTGCAG
ACTGCATGTATGGATCTTGATGGAGGTGGTTTGTTCTTCGGCATCATGGC
CTCTCGGGGTTGGTCCACCCCCAGGTAGCCCTAACGTACATTACTACATG
AACATATGTGTACTTTCTGCTCTCTTTAAACCTCATCGTGATGTCGAACA
TGGTGTAGCTCTTGCACTTTTCCTTTGATTCCTGCGAAATCTGAAAGCGC
TCTGTCCGGAGAATAAGAGCACCTCTAACCACGTCGCTTCTGCTACGGCC
TTCGCGACGGTTAAAGCCCTGACAACGAAGTAACGTTCAGCGGAGGCGGA
GATTTCACGGATGGAGGGGGCGGCAGTTCAAGCGGGAAAAGTGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74:20682..21476+

>mRNA_Ecto-sp13_S_contig74.18577.1 ID=mRNA_Ecto-sp13_S_contig74.18577.1|Name=mRNA_Ecto-sp13_S_contig74.18577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74:20682..21476+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAGAGGGGGAAAAGGAGGGAAAGGACCAAAACCTGCCTTCACCAG
GGTGATCCCGAAATTTCTTCAACAGTATGAGACTATGCTAACGGGACCCA
AGCCACAAGAAGGCCCTGACAACGAAGTAACGTTCAGCGGAGGCGGAGAT
TTCACGGATGGAGGGGGCGGCAGTTCAAGCGGGAAAAGTGGC
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