mRNA_Ecto-sp13_S_contig73922.18569.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig73922.18569.1 vs. uniprot
Match: UPI001420C2DF (cadherin-like domain-containing protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI001420C2DF) HSP 1 Score: 120 bits (300), Expect = 5.090e-29 Identity = 89/123 (72.36%), Postives = 105/123 (85.37%), Query Frame = 1
Query: 1 GAGDSVVFLGGSDDDSXXXXXXXXXXXXXXXXXXXXXXXXXXLFVLRAEDGTDVLELADVIADFEIGVDSLGLADGLSADNLAITATQGGDAAITMFSSGAYLAVLQGVSATDISPDEIAFLV 369
GAGD+ +FLGG+ D XXXXXXXXXXXXXXXXXXXXXXX LF+LRAEDG DVLELADVIADFEIG+DSLGL DGLS +LA+TATQGGDAAI + SSGA+LAVLQG+S ++++ D + +V
Sbjct: 3180 GAGDAAIFLGGTGGDDFXXXXXXXXXXXXXXXXXXXXXXXSDLFILRAEDGADVLELADVIADFEIGIDSLGLVDGLSVGDLAVTATQGGDAAIALQSSGAFLAVLQGISVSEVNLDVFSAVV 3302
BLAST of mRNA_Ecto-sp13_S_contig73922.18569.1 vs. uniprot
Match: UPI00142344FA (Ig-like domain-containing protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00142344FA) HSP 1 Score: 94.0 bits (232), Expect = 7.340e-20 Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 127 LFVLRAEDGTDVLELADVIADFEIGVDSLGLADGLSADNLAITATQGGDAAITMFSSGAYLAVLQGVSATDISPDEI 357
LFVLRA D + LEL DVI DFE+G+DSL L DGL+ D+L ++ T GDA I + S+GA+LAV+QGVSA DISPD I
Sbjct: 1536 LFVLRAADAAETLELTDVIGDFEVGIDSLVLVDGLTGDDLTVSETPEGDAVIALQSTGAFLAVVQGVSAADISPDNI 1612
BLAST of mRNA_Ecto-sp13_S_contig73922.18569.1 vs. uniprot
Match: A0A545U1I8_9PROT (FecR domain-containing protein n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545U1I8_9PROT) HSP 1 Score: 61.6 bits (148), Expect = 1.580e-8 Identity = 63/122 (51.64%), Postives = 82/122 (67.21%), Query Frame = 1
Query: 4 AGDSVVFLGGSDDDSXXXXXXXXXXXXXXXXXXXXXXXXXXLFVLRAEDGTDVLELADVIADFEIGVDSLGLADGLSADNLAITATQGGDAAITMFSSGAYLAVLQGVSATDISPDEIAFLV 369
AGDS +F+GGS +D XXXXXXXXXXXXXXXXXXXXXXXXX+F DG + L LAD++ DFE G+D +GL DGL +L I+A A +++ +G L VL G+S+ + + LV
Sbjct: 2832 AGDSTIFMGGSLNDDFXXXXXXXXXXXXXXXXXXXXXXXXXIFAYARGDGGNSLNLADLLTDFEDGIDKIGLEDGLLFSDLTISADASDRAVVSVVDTGELLVVLDGLSSDLVDEQDFVLLV 2953
BLAST of mRNA_Ecto-sp13_S_contig73922.18569.1 vs. uniprot
Match: UPI001880284D (hypothetical protein n=2 Tax=Tychonema TaxID=54312 RepID=UPI001880284D) HSP 1 Score: 56.6 bits (135), Expect = 5.460e-7 Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 127 LFVLRAEDGTDVLELADVIADFEIGVDSLGLADGLSADNLAITATQGGDAAITMF---SSGAYLAVLQGVSATDISPDEIAF 363
LF L T++L+LAD+I DF+ G D L L D L N+ IT G AA T+ S+G YLAVL+GV+A +I+ + F
Sbjct: 180 LFELEGRSATNILDLADIITDFQKGADILELEDDLRFSNINITQGTGIYAADTLLQIASTGQYLAVLKGVNAGNINQADFIF 261
BLAST of mRNA_Ecto-sp13_S_contig73922.18569.1 vs. uniprot
Match: A0A7X6HRJ0_9CYAN (Calcium-binding protein n=1 Tax=Microcoleus sp. SU_5_6 TaxID=2720483 RepID=A0A7X6HRJ0_9CYAN) HSP 1 Score: 55.5 bits (132), Expect = 1.580e-6 Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 127 LFVLRAEDGTDVLELADVIADFEIGVDSLGLADGLSADNLAITATQGGDAAITMF---SSGAYLAVLQGVSATDISPDEIAF 363
LF L T++L++AD+I DF+ G D L L DGL N+ IT G A+ T+ S+G YLAVL+GV++ I+ + F
Sbjct: 203 LFELEGRSATNILDIADIITDFQKGADILKLKDGLGFSNINITQGTGIYASNTLLQVASTGQYLAVLKGVNSGIINAADFTF 284
BLAST of mRNA_Ecto-sp13_S_contig73922.18569.1 vs. uniprot
Match: UPI0019EB7190 (Uncharacterized protein n=1 Tax=Oscillatoriales cyanobacterium LEGE 11467 TaxID=1828826 RepID=UPI0019EB7190) HSP 1 Score: 54.7 bits (130), Expect = 3.810e-6 Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 127 LFVLRAEDGTDVLELADVIADFEIGVDSLGLADGLSADNLAITATQGGDAAITMFSSGAYLAVLQGVSATDIS 345
+FVLR DG+DV I DFE+GVD LGLADGLS + L IT QG + F + L L+GVSAT ++
Sbjct: 19 VFVLRVGDGSDV------ITDFEVGVDLLGLADGLSFEQLTIT--QGTTGTVVSFGAEV-LVTLEGVSATSLN 82
BLAST of mRNA_Ecto-sp13_S_contig73922.18569.1 vs. uniprot
Match: A0A3M0XZ10_9PROT (VWA domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M0XZ10_9PROT) HSP 1 Score: 52.0 bits (123), Expect = 3.500e-5 Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 127 LFVLRAEDGTDVLELADVIADFEIGVDSLGLADGLSADNLAITATQGGDAAITMFSSGAYLAVLQGVSATDISPDEI 357
++V DG + ADVI DF+ GVD +GL GL++ ++ I G+A I+ +SG LAVL GVS DI+ D++
Sbjct: 973 IYVYEPGDGGSTIAEADVIHDFDDGVDLIGLGGGLTSADITIGDDGSGNAVIST-TSGEVLAVLIGVSPADITDDDL 1048 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73922.18569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig73922.18569.1 >prot_Ecto-sp13_S_contig73922.18569.1 ID=prot_Ecto-sp13_S_contig73922.18569.1|Name=mRNA_Ecto-sp13_S_contig73922.18569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp GAGDSVVFLGGSDDDSFTGGNGADRLDGGAGRDSLVGGGGSDLFVLRAEDback to top mRNA from alignment at Ecto-sp13_S_contig73922:8..379+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig73922.18569.1 ID=mRNA_Ecto-sp13_S_contig73922.18569.1|Name=mRNA_Ecto-sp13_S_contig73922.18569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73922:8..379+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73922:8..379+ >mRNA_Ecto-sp13_S_contig73922.18569.1 ID=mRNA_Ecto-sp13_S_contig73922.18569.1|Name=mRNA_Ecto-sp13_S_contig73922.18569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73922:8..379+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |