mRNA_Ecto-sp13_S_contig7386.18564.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7386.18564.1
Unique NamemRNA_Ecto-sp13_S_contig7386.18564.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7386.18564.1 vs. uniprot
Match: D7G363_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G363_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 4.110e-78
Identity = 142/154 (92.21%), Postives = 145/154 (94.16%), Query Frame = 2 
Query:  407 MSSGLIPRRMAAIASSRSAFSAAAAHRSLCSHHEQSQHHPGSRGLAHRASVVSSPNEKRLQSPDQLHNQQHKEHSQHDHPXXXXHQQQARRPSMSQAQPQAGVVDSSSGGCAEDVPQYSVLASQQVFHEATERQREEWALARPSPEVRLRTSVE 868
            MSSGLIPRRMAAIASSRSAFSAAAAHRSLCSHHEQSQHHPGS GLAHRASVVSSPNE+RLQSPDQLHNQQHKEH QHDHP    HQQQARRPSMSQAQPQAGV DSSSGGCA+DVPQYSVLASQQVFHEATE QREEWALA+PSPEVRLR SVE
Sbjct:    1 MSSGLIPRRMAAIASSRSAFSAAAAHRSLCSHHEQSQHHPGSHGLAHRASVVSSPNEQRLQSPDQLHNQQHKEHGQHDHPHRSHHQQQARRPSMSQAQPQAGVADSSSGGCADDVPQYSVLASQQVFHEATEGQREEWALAQPSPEVRLRMSVE 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7386.18564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G363_ECTSI4.110e-7892.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7386contigEcto-sp13_S_contig7386:48..6437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2990
Hectar predicted targeting categoryother localisation
Exons6
Cds size1083
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7386.18564.1prot_Ecto-sp13_S_contig7386.18564.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7386 1858..6286 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464007.3800342-UTR-Ecto-sp13_S_contig7386:47..7371681464007.3800342-UTR-Ecto-sp13_S_contig7386:47..737Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7386 48..737 -
1681464007.3900583-UTR-Ecto-sp13_S_contig7386:791..18571681464007.3900583-UTR-Ecto-sp13_S_contig7386:791..1857Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7386 792..1857 -
1681464007.451278-UTR-Ecto-sp13_S_contig7386:6286..64371681464007.451278-UTR-Ecto-sp13_S_contig7386:6286..6437Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7386 6287..6437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464007.3989289-CDS-Ecto-sp13_S_contig7386:1857..21161681464007.3989289-CDS-Ecto-sp13_S_contig7386:1857..2116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7386 1858..2116 -
1681464007.4079201-CDS-Ecto-sp13_S_contig7386:2917..30221681464007.4079201-CDS-Ecto-sp13_S_contig7386:2917..3022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7386 2918..3022 -
1681464007.4169977-CDS-Ecto-sp13_S_contig7386:3406..34951681464007.4169977-CDS-Ecto-sp13_S_contig7386:3406..3495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7386 3407..3495 -
1681464007.4290714-CDS-Ecto-sp13_S_contig7386:4199..45301681464007.4290714-CDS-Ecto-sp13_S_contig7386:4199..4530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7386 4200..4530 -
1681464007.4373333-CDS-Ecto-sp13_S_contig7386:5987..62861681464007.4373333-CDS-Ecto-sp13_S_contig7386:5987..6286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7386 5988..6286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7386.18564.1

>prot_Ecto-sp13_S_contig7386.18564.1 ID=prot_Ecto-sp13_S_contig7386.18564.1|Name=mRNA_Ecto-sp13_S_contig7386.18564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=361bp
MCDANSIPPSLPLLLPTLQQKSPAEHYNSISQLGLTADCSGLGHHKVGSD
RLIAHHASAISLSWLLACRVILTAESSQTTADDGAMSSGLIPRRMAAIAS
SRSAFSAAAAHRSLCSHHEQSQHHPGSRGLAHRASVVSSPNEKRLQSPDQ
LHNQQHKEHSQHDHPHRSHHQQQARRPSMSQAQPQAGVVDSSSGGCAEDV
PQYSVLASQQVFHEATERQREEWALARPSPEVRLRTSVETFGNRYFVDEL
PCRTRKSIATAAAAGKEYITAGDITRVLDTISDGEHVLTEGEAEAICAAW
SDHHPYHEQHHDQQQQPTDGWGVGTTPGVDLGTPAAGADAGAGASISPKA
FLELLGHCHK*
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mRNA from alignment at Ecto-sp13_S_contig7386:48..6437-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7386.18564.1 ID=mRNA_Ecto-sp13_S_contig7386.18564.1|Name=mRNA_Ecto-sp13_S_contig7386.18564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7386:48..6437- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGACTAACAAGGCTTCTTTCTCCCTGCGCATCCTGTCCGTCGGCACCT
TCTCGGAGCGAGTGGTGATCCGTCGTTGCTGTGAGTTGCTTTTCGAAAAT
TTCGGACCCTCGGGAACGTTCACGGTTCATTCCTGGGGTGGGAGGGCAGC
GATGTGTGACGCCAATTCCATCCCCCCTTCTCTTCCACTGCTACTTCCCA
CACTACAACAAAAGTCTCCTGCAGAACACTATAACAGCATTAGCCAGCTC
GGTCTGACTGCGGATTGCTCTGGCCTCGGTCATCACAAGGTTGGCTCCGA
CAGATTAATTGCACACCACGCCTCGGCGATCTCCCTCTCTTGGCTCTTGG
CTTGTCGCGTGATTCTAACCGCAGAGAGCTCGCAAACAACGGCAGACGAC
GGGGCAATGAGTTCGGGCCTGATTCCACGAAGGATGGCTGCCATCGCAAG
GTGGGAAGGATATGAGAGACTGTACTCCGTACTGCTTGCATGTACAAGCT
GTAGTCTCTGTTGGAACAGAGGACAGTAGAGATAAATGCAGTCGTGAATA
TATATTTTTAATGCGACTGCTGTGCGTCCTGATCCTGTAAGCTGGGGTCG
GTTGTTGGTGAATGGTACATCCCTTGTTCCTTTTAGGGCCTCAATCATAG
CGGATTTCCCAAACTACAACGCATCCGTTCCACGGCAACTGACGTACTGC
GGTGGGGTGAGGAGCCCAAGGGAAGATCTACACATGGAGGTTTGCATATG
CATACGCAGCAAGACTTCACACAGTCGCGGTGGTGGTGGGGAGCCGTTTC
CCCCGTGCTACCTTCACGACGACGAATTCTCTGGCTGATGATCGTTTGTC
GTTCTACTGTTGCCGCGACCTTTGTACAACAGCAGTGCCGCTCATATTCC
AACACACCGCAAGAGTGCGGGAAATCAACGTGTCAATTAGTGAAGGGCGA
AGACGCATTGCCGCCGGCTGGTTGACAGGAACCATCTGCCGGCCTTCAGT
CCGCCGATTGGGCTCCTGCACGCACGTCTCACACGACCTGCGACGTTATC
TACTTTATCCCAGAAGAACTCTACGGGATGTGGATGCATATGGACATTGT
GTTTGCGAAATACATACGTGTTGTCATGGGGTTCAAGCGTTGGGTGGTTG
CTTCTTCAAGTGCCGTCAGCTATGCACAGTGTAACAACCATTTGTTTTCT
TACTATCTTCCAATCCTCCTGTTTATGACTTGCACCACACTCACCGTTGG
CGAAGTTGTTTCGAGTGCAAAACGAGAGAGGGCACCAACGGGCACAAGGG
CTGCTACAGTATCACATGCACGTAGAACCTTCCAGCGCACGTGAAATCGA
AAGTCTAGCCGGTTATATATGCATGGCATGAGCTCCGCTCGGAAGACACG
CCGTCGAACAACGGCAGTCTTCACAATGTGATGTAGACGTCACAACTCGA
AGATGGAGCGTGCTGCTCCTTCCTTCCACCACACGTCAACAAAGTAGCTT
GATGTGCAGGTCTGGTGCTTTTAACCATGCTGGAGAGGCGATGACTTCGG
TGCGTGCTAGTAGAAGTCTAGTTGTTCTGGCGGCAGCAACTATAACTTCA
ACTGGAGGACCTTGAAAGATGCGTGATCATGCGTGTGTTGTTCTGTTCAC
CTAATGTTGAAAATTGAAATCCCCAACCGAATTTCTCCGATGAGGGACCG
AAGTCTGAATCAACGAGCGACAAGCAGGCATAAAACCGCTCGTGAAAGAC
CTTCGCCTGCCAATTCCAGGGGAAGTCTTCAGGATAGCAGCTAAGCTAGC
ACATATGCATACATACTGACCTCCGGAACGATCTCGGAATAAGCCGTTTT
CAAGAATACAAACGAGTGACTTCCCGGCGCCCTTTCGTGAACATCATTTT
CGAACAGTTCGCGATCTGCGTTCAGCGCCGCCGCAGCTCACCGGAGCCTT
TGCTCGCATCATGAGCAGAGCCAACATCATCCGGGTTCTCGCGGCCTGGC
GCACCGCGCGTCCGTCGTGTCAAGCCCCAACGAGAAGCGGCTGCAAAGCC
CTGACCAGCTGCACAATCAACAGCATAAGGAGCACAGCCAGCACGACCAC
CCTCACCGTTCGCACCACCAGCAACAGGCCAGGCGCCCCTCAATGAGCCA
GGCGCAACCCCAGGCGGGCGTGGTTGACTCGTCTAGCGGTGGATGCGCTG
AAGACGTTCCTCAGTACTCCGTGTTGGCCTCCCAGCAGGTGAAACACTAA
AAACACGGTGTTCGTTGCGCTTGCTGTTTTTGGTGGCTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTTGCTGTTGTTGTTTG
ATAACGTTGAGGACAACCGCTCGCTTCAGTTTCGTTTTTGATATAATCAA
GCAGCCAAACGAGATTTATATACTCGCTGCTCACAAACTGGTAGCCCGTG
GCTACGAGAGGGCGACGAGCGTATGCCCCCGTTAAATCGACTTAGGGATC
GCATGCAAGTATGCATAGGTCGTGGCCTTCATTCGACGACATCGCTGGGA
TCTGTGAACCGAATCACATCAACGTCGCGTGCATTCTTGGCGGTGGCTTG
GTTGATCCATTTTGTTTTTTGGAAATAGCCTGGGCCATGGCGACAACCAG
TTTTCGTCGTTTCGGTGTGAAACCTTTATTCTTGGGTAAAGAAACGAAAT
CCTCCCCCCACGCACAACCCCACCACCACCAACAACAATGTAGCAAGAAA
AACAACAACAACAATGACCAAACAACAGGAACAGCACCGGCAACACCACC
ACGACCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACTTACCAACGAACGCGCTTCATCTCTGAAACACTCATGCATCAAATT
CTGCGCCTTTTCCGGCCACCAATGATTTTTTCTTCGGTCCAGGTTTTCCA
CGAGGCGACGGAACGTCAGCGTGAAGAGTGGGCCCTAGCCCGGCCGTCGC
CGGAGGTCCGGCTTCGAACGTCGGTTGAAACGTGAGAGACAATTTCTCAC
ATTGCCTAATGCGTTACTTGTTAGCGATGACTATATGTGCCCTATTGAAG
GCATGCGAGGCTTTGAAGTCCTTTGGGACCGGGCCTGTTTAGAATAACAG
CACCCGCTTCACGGAGGTCTGTTGTCCAACACATCAACTCATGCAGATTT
TTTTTAACCCGAAGATTGTGCTACCCTGTTATCCTGTGTACATCAGGTGG
CTTCAACTCTTTTTGGTTCGCACGTTTGACAAGCGGGTAAATCTCGTACC
TCGCCTGTGGGTTGCTTTCGGCGCAGGAGAGGTTGCATGGATGTTTTACG
GATGCAGGCAGCGGAAACAAGCGGTTTCTTTTTGCCCGTTTCAATCGTAA
CCTCACAAATTTCAGGTTTGGGAATCGCTACTTTGTTGATGAGCTGCCCT
GCCGCACTCGCAAGTCGATCGCTACGGCTGCCGCCGCAGGGAAGGAGTAC
ATCACGGCCGGAGACATCACGTGAGGATCATATGAAGCAACACAAACTAG
TCAGAGTTTTTAGACGTGGTAGCTGGACTATGTAGAGATGTATTGAGTCT
ATTTTATGCCAGGAGTGGCAAAGAGGGTCAAAACCGCCAGGTATCAATGA
TCACACAGCAAAGTGGAAAAGCGTCGAAAGGTGGCAGACAACCGACAAAT
CAGTCACGTGAGGTAGGGCTTCTGGACCCACCCTCCCCCTTCGTCCAGGC
ACGCTGCACTCCAAGATGTTGCGTGCGGGGTTGGCTTTCGTGTGCGAGTG
ACCGCCCTTGCTCCTTCCGGCGAAACTCGGCGCTTTTTATGCATTCTCGT
CAAAACGTGTCGCCCGATTCTGGCCATACCCACCCATACGCCCGCATGTC
CTCTCTTCCCGCCTCGGAACCTGACCCCTACCTTAGCCCTACGCCCTCAA
AACCCCAAAGTCGTGTTGGGGTTGGGGTTCGACCTGAATACACACGGCCT
ACAGTAGTGTAGATTAGACACCCATCCCGATGGAGGGTTCACGAGCCATG
TGAAGGAAACCGAAGTAGTCGAGGTCCCCGTCTGGTCCATAGCCGTGCCG
TGCATAGATCATCGTTGGTTCTCTGTGATCGCACCACTGCAGATATACCC
CTGCTGGTCTTCTGAGATCTTTGCCAACGCGGTTGCACACAGGGAGGCGT
GTTCAAAAGCCACGAAACACGACCCGAGATCGCAGAGCCCTAATGACGGT
ATCATCGTGACAAGCGTCAGTCATCCTTTCGGAACGTTTCCGTTTTCGCA
CATGTTCTTTTGCCCCTGCAGCCGTGTGCTCGACACCATTTCCGATGGAG
AGCACGTTCTTACCGAGGGCGAAGCGGAAGCTATCTGCGCTGCATGGAGC
GATCACCATCCTTACCATGAGCAGCATCATGATCAGCAGCAGCAGCCAAC
CGATGGCTGGGGCGTCGGTACCACTCCGGGTGTCGATCTTGGTACTCCTG
CCGCTGGTGCCGACGCTGGAGCGGGGGCATCGATATCCCCGAAGGCCTTT
CTGGAGTTGTTAGGACATTGCCACAAGTAATGCTATGTCTTTCTCTGCGA
TTGGAATACATTCTTGTGAAGATCTTGAATCGAGATTTTACCGAAAAACG
GGCTCGGTGAAAGGGAGTGCGGGTGGGTCTGCTAGTCGCAGTCCTCTTCA
GGGTAGACGCCTGTGTGGAGGAATCGGAGGCATGGAAACGGGCCGAATCT
CGTTTCTGCAAGAAAGTCAGCGTTAAGGGTTTCGAGCACCATGCGTATGT
ATGTATATGTTCTCGGGTGCTTGCGTTCGTGGTCAATGTTCTGTGAACCG
TGCTTGTGTGCAGCACGTTCGATGGTGTTCTTTTTGTTGTTGGTAGTGCA
AGTTCCACGCCGAAATCCTCGCGCGTGGAAACATCACTCCACGCTTGCTT
GTATTGGTCCTTGCTTGTAGGCAAACTGTACCGAGTGTGTACAACAAGAA
GGCCTATCGCTCCACTCTATTCGCGAAGCTGCCGCTTGTGCCTTAGGCTA
TCGCGTGTCACAGTATTCGTCGATGTCGATATCTCTGCTCTGACGGGCAC
AGCGACAAGAAACAGCAAGGGCCAGGCGCGACGGGTTGTAGCCGCAACGC
AACGCCTCCTGTATGTGTATCCCCGGTGCGGCTGAGGTGTGTGGGCATGA
AGCGTGTGTAGAGGGGGTGCGAGTGGACCCCTGAGTGAGAGAGCGAGAGA
GAGAGAGAGAGAGTCGATAGAGAGAGCTTACACGCTCTGCATGTCTGTTC
ATCTATATTATATGCTTCGAAGTATTTGCTTTTCTTCGTCGGCCGTTCCT
GGGACAACATGTTCATTGTACCCAGCCCCAACACGAACCGCTGAGGGTGG
CGGCGCCTCGAACACTACCACAACGGAAAGGGCGATGGCGGCTGAACGTA
TTGTGAACGGATTTGGGCTTGGGGCATCCGGGACCGCTCGCAATGTTGGA
GTACTTTCATGATGTCTGCGAATGGTATTTGTTTGTGCCGACGACATGGG
AACCTGTGGTGTTAGCACAAACAACGTCGGATTTCACTCAAACGCCGACC
GGATTGGGCGTGGACAAGTTCAATGGGCAAAGTGAAATAGGCGGGGGTGG
GGGGTAGGCTTTGTTTGTTTCGCGTCTTGGGATCGTTTGCATTGTTGGAG
ATCCCATGCTGCCTTCGCTGTCCGCAATCATTGCCAGACTGGATAACGCC
TTTACGTCCAGATCGAGGAAGAAGGAGGAAGGGGGACCGTGTGCGGTACA
TCATGCTTGCGTGGAAAAAAACTTCTCAGGGGCGCACACGCTTAGTTCGG
ATTGTTTACGCTGCAGCATGGTGTGTGCCATTTGTCGAAAAGAGCCATGT
GCTGTCGGAAAGAGTAGACTATTTAAGAGTGCTAAGAAAATTCTCGAGGG
GGCAACTGGGTGCTGAAGAACCAACTGTACTTGCGCCAACGGGAGCTAGC
TGTACTGATAGGCAGAGAGCCGAGCGGCGTTGTGGTTGTTCCTCCAGCGA
CATGTGCGACCACACGGAAGATGGTGCTGGCGTCCGTTCATCGTGTTCAG
CACGTTCTGCGACTCACTTCCCCTGCACTGGGATTGACCGATCAACCTTG
ATAGACATGTTCTTTGGCTGCCCGACGGTTACTCGAAGGACCCATCGCCC
GCCCTTGCTACTTTTTTTCTTTCTCCCGTCCTTTCGGTTGACGTGGGCCG
TTCGTTGGATGTTTTTTTCACAAGAACCTGTTGAACGGTATGATGTTGGT
GTTTGCGCGTATTCTGTGCACGTCGTTGTAGAAGAAGAGTGCCATGTTCT
TCCTTCTTCTGGCAGTGCCAACGGAACATGGTCTGCTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7386:48..6437-

>mRNA_Ecto-sp13_S_contig7386.18564.1 ID=mRNA_Ecto-sp13_S_contig7386.18564.1|Name=mRNA_Ecto-sp13_S_contig7386.18564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7386:48..6437- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTGACGCCAATTCCATCCCCCCTTCTCTTCCACTGCTACTTCCCAC
ACTACAACAAAAGTCTCCTGCAGAACACTATAACAGCATTAGCCAGCTCG
GTCTGACTGCGGATTGCTCTGGCCTCGGTCATCACAAGGTTGGCTCCGAC
AGATTAATTGCACACCACGCCTCGGCGATCTCCCTCTCTTGGCTCTTGGC
TTGTCGCGTGATTCTAACCGCAGAGAGCTCGCAAACAACGGCAGACGACG
GGGCAATGAGTTCGGGCCTGATTCCACGAAGGATGGCTGCCATCGCAAGT
TCGCGATCTGCGTTCAGCGCCGCCGCAGCTCACCGGAGCCTTTGCTCGCA
TCATGAGCAGAGCCAACATCATCCGGGTTCTCGCGGCCTGGCGCACCGCG
CGTCCGTCGTGTCAAGCCCCAACGAGAAGCGGCTGCAAAGCCCTGACCAG
CTGCACAATCAACAGCATAAGGAGCACAGCCAGCACGACCACCCTCACCG
TTCGCACCACCAGCAACAGGCCAGGCGCCCCTCAATGAGCCAGGCGCAAC
CCCAGGCGGGCGTGGTTGACTCGTCTAGCGGTGGATGCGCTGAAGACGTT
CCTCAGTACTCCGTGTTGGCCTCCCAGCAGGTTTTCCACGAGGCGACGGA
ACGTCAGCGTGAAGAGTGGGCCCTAGCCCGGCCGTCGCCGGAGGTCCGGC
TTCGAACGTCGGTTGAAACGTTTGGGAATCGCTACTTTGTTGATGAGCTG
CCCTGCCGCACTCGCAAGTCGATCGCTACGGCTGCCGCCGCAGGGAAGGA
GTACATCACGGCCGGAGACATCACCCGTGTGCTCGACACCATTTCCGATG
GAGAGCACGTTCTTACCGAGGGCGAAGCGGAAGCTATCTGCGCTGCATGG
AGCGATCACCATCCTTACCATGAGCAGCATCATGATCAGCAGCAGCAGCC
AACCGATGGCTGGGGCGTCGGTACCACTCCGGGTGTCGATCTTGGTACTC
CTGCCGCTGGTGCCGACGCTGGAGCGGGGGCATCGATATCCCCGAAGGCC
TTTCTGGAGTTGTTAGGACATTGCCACAAGTAA
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