mRNA_Ecto-sp13_S_contig73856.18563.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73856.18563.1
Unique NamemRNA_Ecto-sp13_S_contig73856.18563.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig73856.18563.1 vs. uniprot
Match: A0A6H5JNH2_9PHAE (Sulf_transp domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNH2_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 7.910e-19
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1
Query:    4 YAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFLT 132
            +AVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFLT
Sbjct:   86 FAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFLT 128          
BLAST of mRNA_Ecto-sp13_S_contig73856.18563.1 vs. uniprot
Match: A0A1T0CRV9_9GAMM (Uncharacterized protein n=1 Tax=Moraxella pluranimalium TaxID=470453 RepID=A0A1T0CRV9_9GAMM)

HSP 1 Score: 75.1 bits (183), Expect = 4.090e-16
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 1
Query:   10 VAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFLT 132
            +AG LVGLGTRLGSGCTSGHG+CG+ RLSRRSIVATLTF+T
Sbjct:   82 IAGMLVGLGTRLGSGCTSGHGICGISRLSRRSIVATLTFMT 122          
BLAST of mRNA_Ecto-sp13_S_contig73856.18563.1 vs. uniprot
Match: A0A2E9QX36_9DELT (YeeE/YedE family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E9QX36_9DELT)

HSP 1 Score: 74.7 bits (182), Expect = 6.370e-16
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 1
Query:    1 VYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFLT 132
            VY VAG LVG GTRLGSGCTSGHG+CG+ R S RSIVATLTF+T
Sbjct:   83 VYVVAGLLVGFGTRLGSGCTSGHGICGISRFSARSIVATLTFIT 126          
BLAST of mRNA_Ecto-sp13_S_contig73856.18563.1 vs. uniprot
Match: A0A258BP21_9SPHN (Sulf_transp domain-containing protein n=1 Tax=Sphingobium sp. 32-64-5 TaxID=1970430 RepID=A0A258BP21_9SPHN)

HSP 1 Score: 73.2 bits (178), Expect = 2.330e-15
Identity = 33/43 (76.74%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    1 VYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFL 129
            V A+AG +VG+GTRLGSGCTSGHG+CG+ RLS+RSIVATLTF+
Sbjct:   79 VLAIAGLIVGIGTRLGSGCTSGHGVCGMSRLSKRSIVATLTFM 121          
BLAST of mRNA_Ecto-sp13_S_contig73856.18563.1 vs. uniprot
Match: A0A845AP75_9SPHN (YeeE/YedE family protein n=1 Tax=Parerythrobacter jejuensis TaxID=795812 RepID=A0A845AP75_9SPHN)

HSP 1 Score: 73.2 bits (178), Expect = 3.000e-15
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    1 VYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFL 129
            V A+AG LVG+GTRLGSGCTSGHG+CG+ RLS+RSIVATLTF+
Sbjct:   88 VLAIAGLLVGIGTRLGSGCTSGHGVCGVSRLSQRSIVATLTFM 130          
BLAST of mRNA_Ecto-sp13_S_contig73856.18563.1 vs. uniprot
Match: A0A2E5CBV8_9PROT (YeeE/YedE family protein n=1 Tax=Peredibacter sp. TaxID=2024850 RepID=A0A2E5CBV8_9PROT)

HSP 1 Score: 72.0 bits (175), Expect = 3.990e-15
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1
Query:   10 VAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFL 129
            VAG LVG GTR+GSGCTSGHG+CGLPRLS+RS VATLTF+
Sbjct:   65 VAGLLVGFGTRMGSGCTSGHGVCGLPRLSKRSFVATLTFM 104          
BLAST of mRNA_Ecto-sp13_S_contig73856.18563.1 vs. uniprot
Match: U3A0K1_9HYPH (Sulf_transp domain-containing protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=U3A0K1_9HYPH)

HSP 1 Score: 72.8 bits (177), Expect = 4.240e-15
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1
Query:   10 VAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFLT 132
            +AG LVG GTRLGSGCTSGHG+CGL RLSRRS+VATLTF+T
Sbjct:   92 IAGLLVGFGTRLGSGCTSGHGVCGLSRLSRRSMVATLTFMT 132          
BLAST of mRNA_Ecto-sp13_S_contig73856.18563.1 vs. uniprot
Match: A0A5J5HPX1_9SPHN (YeeE/YedE family protein n=2 Tax=Sphingobium TaxID=165695 RepID=A0A5J5HPX1_9SPHN)

HSP 1 Score: 72.8 bits (177), Expect = 4.240e-15
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1
Query:   10 VAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFLT 132
            +AG LVG GTRLGSGCTSGHG+CGL RLSRRS+VATLTF+T
Sbjct:   92 IAGLLVGFGTRLGSGCTSGHGVCGLSRLSRRSMVATLTFMT 132          
BLAST of mRNA_Ecto-sp13_S_contig73856.18563.1 vs. uniprot
Match: UPI001082911A (YeeE/YedE family protein n=1 Tax=Klebsiella quasipneumoniae TaxID=1463165 RepID=UPI001082911A)

HSP 1 Score: 72.4 bits (176), Expect = 5.230e-15
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1
Query:   10 VAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFL 129
            +AGFLVG+GTR GSGCTSGHG+CGL RLSRRS+VATLTF+
Sbjct:   89 IAGFLVGIGTRYGSGCTSGHGVCGLSRLSRRSLVATLTFM 128          
BLAST of mRNA_Ecto-sp13_S_contig73856.18563.1 vs. uniprot
Match: K9DDI3_SPHYA (Sulf_transp domain-containing protein n=5 Tax=Sphingomonadaceae TaxID=41297 RepID=K9DDI3_SPHYA)

HSP 1 Score: 72.4 bits (176), Expect = 5.860e-15
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    7 AVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFL 129
            A+AG LVG GTRLGSGCTSGHG+CGL RLSRRS+VATLTF+
Sbjct:   90 AIAGLLVGFGTRLGSGCTSGHGVCGLSRLSRRSMVATLTFM 130          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73856.18563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH2_9PHAE7.910e-1997.67Sulf_transp domain-containing protein n=2 Tax=Ecto... [more]
A0A1T0CRV9_9GAMM4.090e-1685.37Uncharacterized protein n=1 Tax=Moraxella pluranim... [more]
A0A2E9QX36_9DELT6.370e-1679.55YeeE/YedE family protein n=1 Tax=Deltaproteobacter... [more]
A0A258BP21_9SPHN2.330e-1576.74Sulf_transp domain-containing protein n=1 Tax=Sphi... [more]
A0A845AP75_9SPHN3.000e-1579.07YeeE/YedE family protein n=1 Tax=Parerythrobacter ... [more]
A0A2E5CBV8_9PROT3.990e-1582.50YeeE/YedE family protein n=1 Tax=Peredibacter sp. ... [more]
U3A0K1_9HYPH4.240e-1582.93Sulf_transp domain-containing protein n=2 Tax=Alph... [more]
A0A5J5HPX1_9SPHN4.240e-1582.93YeeE/YedE family protein n=2 Tax=Sphingobium TaxID... [more]
UPI001082911A5.230e-1582.50YeeE/YedE family protein n=1 Tax=Klebsiella quasip... [more]
K9DDI3_SPHYA5.860e-1582.93Sulf_transp domain-containing protein n=5 Tax=Sphi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73856contigEcto-sp13_S_contig73856:529..660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score87.4
Seed ortholog evalue1.8e-15
Seed eggNOG ortholog2880.D7G370
Model size132
KEGG koko:K07112
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG OGs2S27S@2759,COG2391@1
Cds size132
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464007.328141-CDS-Ecto-sp13_S_contig73856:528..6601681464007.328141-CDS-Ecto-sp13_S_contig73856:528..660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73856 529..660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73856.18563.1prot_Ecto-sp13_S_contig73856.18563.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73856 529..660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73856.18563.1

>prot_Ecto-sp13_S_contig73856.18563.1 ID=prot_Ecto-sp13_S_contig73856.18563.1|Name=mRNA_Ecto-sp13_S_contig73856.18563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
VYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATLTFLT
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mRNA from alignment at Ecto-sp13_S_contig73856:529..660-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73856.18563.1 ID=mRNA_Ecto-sp13_S_contig73856.18563.1|Name=mRNA_Ecto-sp13_S_contig73856.18563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73856:529..660- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTACGCGGTCGCGGGTTTTCTCGTGGGCTTGGGCACCAGGCTTGGCAG CGGGTGCACGAGCGGGCACGGGCTGTGCGGTCTGCCGCGGTTGTCGAGGC GCAGCATCGTCGCAACGCTCACGTTCCTCACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73856:529..660-

>mRNA_Ecto-sp13_S_contig73856.18563.1 ID=mRNA_Ecto-sp13_S_contig73856.18563.1|Name=mRNA_Ecto-sp13_S_contig73856.18563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73856:529..660- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTACGCGGTCGCGGGTTTTCTCGTGGGCTTGGGCACCAGGCTTGGCAG
CGGGTGCACGAGCGGGCACGGGCTGTGCGGTCTGCCGCGGTTGTCGAGGC
GCAGCATCGTCGCAACGCTCACGTTCCTCACC
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