mRNA_Ecto-sp13_S_contig73802.18557.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73802.18557.1
Unique NamemRNA_Ecto-sp13_S_contig73802.18557.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig73802.18557.1 vs. uniprot
Match: A0A2G2H7N3_9FLAO (Transcriptional regulator n=1 Tax=Lutibacter sp. TaxID=1925666 RepID=A0A2G2H7N3_9FLAO)

HSP 1 Score: 55.8 bits (133), Expect = 1.390e-7
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    7 IAEQLPQLYRTHRSYLINPVFFKGFVKQKTNLSVDLGYDIRIPIARNIKGKALKDLPFKTK 189
            IA++ P+L RTHRS++INP  F+ +  +K  +SV L YDI +PI++  +     +L   TK
Sbjct:  208 IADEFPELLRTHRSFIINPFHFQSWKTEKGKISVVLSYDIEVPISKTYQDVVKSELNSTTK 268
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BLAST of mRNA_Ecto-sp13_S_contig73802.18557.1 vs. uniprot
Match: A0A2S7WRQ9_9FLAO (HTH LytTR-type domain-containing protein n=1 Tax=Polaribacter porphyrae TaxID=1137780 RepID=A0A2S7WRQ9_9FLAO)

HSP 1 Score: 55.1 bits (131), Expect = 2.570e-7
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    1 ADIAEQLPQLYRTHRSYLINPVFFKGFVKQKTNLSVDLGYDIRIPIARNIKGKALKDLPF 180
            +DI +Q P L +THRSYLINP++FK F  +   L + L     IP++R+   K  ++L F
Sbjct:  202 SDIEKQYPILLKTHRSYLINPIYFKSFENKNNKLFIMLNKGFSIPVSRSRVSKVKQELTF 261
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BLAST of mRNA_Ecto-sp13_S_contig73802.18557.1 vs. uniprot
Match: A0A5J4IY01_9FLAO (HTH LytTR-type domain-containing protein n=1 Tax=Patiriisocius marinus TaxID=1397112 RepID=A0A5J4IY01_9FLAO)

HSP 1 Score: 48.9 bits (115), Expect = 4.390e-5
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   19 LPQLYRTHRSYLINPVFFKGFVKQKTNLSVDLGYDIRIPIARNIKGK 159
            +P+L RTHRSYLINPV F+ F  ++  LSV L  +I IP+++    K
Sbjct:  209 IPELMRTHRSYLINPVHFQQFKMEQGKLSVILSAEILIPVSKTHTSK 255
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73802.18557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2G2H7N3_9FLAO1.390e-740.98Transcriptional regulator n=1 Tax=Lutibacter sp. T... [more]
A0A2S7WRQ9_9FLAO2.570e-741.67HTH LytTR-type domain-containing protein n=1 Tax=P... [more]
A0A5J4IY01_9FLAO4.390e-548.94HTH LytTR-type domain-containing protein n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73802contigEcto-sp13_S_contig73802:471..665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size195
Hectar predicted targeting categoryother localisation
Exons1
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464006.9860427-CDS-Ecto-sp13_S_contig73802:470..6651681464006.9860427-CDS-Ecto-sp13_S_contig73802:470..665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73802 471..665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73802.18557.1prot_Ecto-sp13_S_contig73802.18557.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73802 471..665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73802.18557.1

>prot_Ecto-sp13_S_contig73802.18557.1 ID=prot_Ecto-sp13_S_contig73802.18557.1|Name=mRNA_Ecto-sp13_S_contig73802.18557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
ADIAEQLPQLYRTHRSYLINPVFFKGFVKQKTNLSVDLGYDIRIPIARNI
KGKALKDLPFKTKT*
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mRNA from alignment at Ecto-sp13_S_contig73802:471..665-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73802.18557.1 ID=mRNA_Ecto-sp13_S_contig73802.18557.1|Name=mRNA_Ecto-sp13_S_contig73802.18557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73802:471..665- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGATATCGCCGAGCAGCTACCCCAGCTTTATAGAACACACCGATCGTA
TTTGATCAACCCTGTTTTCTTCAAGGGCTTTGTCAAACAGAAAACAAACC
TGTCTGTCGATCTAGGGTATGACATAAGAATACCGATTGCCAGAAACATA
AAAGGAAAGGCACTAAAAGATTTACCGTTTAAAACAAAAACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73802:471..665-

>mRNA_Ecto-sp13_S_contig73802.18557.1 ID=mRNA_Ecto-sp13_S_contig73802.18557.1|Name=mRNA_Ecto-sp13_S_contig73802.18557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73802:471..665- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGATATCGCCGAGCAGCTACCCCAGCTTTATAGAACACACCGATCGTA
TTTGATCAACCCTGTTTTCTTCAAGGGCTTTGTCAAACAGAAAACAAACC
TGTCTGTCGATCTAGGGTATGACATAAGAATACCGATTGCCAGAAACATA
AAAGGAAAGGCACTAAAAGATTTACCGTTTAAAACAAAAACGTGA
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