mRNA_Ecto-sp13_S_contig7366.18538.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7366.18538.1
Unique NamemRNA_Ecto-sp13_S_contig7366.18538.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7366.18538.1 vs. uniprot
Match: D7FX74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI)

HSP 1 Score: 405 bits (1040), Expect = 5.230e-123
Identity = 267/297 (89.90%), Postives = 273/297 (91.92%), Query Frame = 2 
Query:    2 ARDVLRWMKLEGFQASEEAYMLAIEACCNPTVPQGSPAAPQQQSSFTTPPATSRQRLPLPPPAVSSGATSPEDLAGVRRKLFSEGEAPESEQHSXXXXXXXXXXXXXXXXXXDDGDNGVAAVLRPATAGTSVPGVGDPASSVDEDVERGRVAEKVPAAXXXXXXXXXXXXXXXXXXXXXXXX--KAEEQPELEWVVIPGGRVSPPEFDEDGNEKNVTPPGTMGGAAWASGGATAGXXXXXXVGFGGGDGEPFSREGEVTTAAASRRDGDGGTTSPASARAGVSRAGAVNVLSPLAAA 886
            ARDVLRWMKLEGFQASEEAYMLAIEACCNP VPQ SPAAPQQ SSFTTPPATSRQRLPLPPP  +SGATSPEDLAGVRRKLFSEGEAPESEQHS  XXXXXXXXXXXXXXXX  GD+GVAAVLRPATAGTSVPGVGDPASSVDEDVERGRVAE++PA XXXXXXXXXXXXXXXXXXXXXXXX  KAE +PELEWVVIPGGRVSPPEFDEDGNEKNVTPPGTMGGAAWA+GGA AG      VGFGGGDG PF REGE TTAAASRRDGDGGTTSPASARA VSRAGAVNVLSPLAAA
Sbjct:  705 ARDVLRWMKLEGFQASEEAYMLAIEACCNPAVPQDSPAAPQQPSSFTTPPATSRQRLPLPPPTFASGATSPEDLAGVRRKLFSEGEAPESEQHSAAXXXXXXXXXXXXXXXXX-GDDGVAAVLRPATAGTSVPGVGDPASSVDEDVERGRVAEEMPAXXXXXXXXXXXXXXXXXXXXXXXXXXRKAERRPELEWVVIPGGRVSPPEFDEDGNEKNVTPPGTMGGAAWATGGAKAGPGGSGAVGFGGGDGAPFPREGEATTAAASRRDGDGGTTSPASARADVSRAGAVNVLSPLAAA 1000
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7366.18538.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 393 bits (1010), Expect = 5.560e-117
Identity = 253/300 (84.33%), Postives = 257/300 (85.67%), Query Frame = 2 
Query:    2 ARDVLRWMKLEGFQASEEAYMLAIEACCNPTVPQGSPAAPQQQSSFTTPPATSRQRLPLPPPAVSSGATSPEDLAGVRRKLFSEGEAPESEQHSXXXXXXXXXXXXXXXXXXDD--GDNGVAAVLRPATAGTSVPGVGDPASSVDEDVERGRVAEKVPAAXXXXXXXXXXXXXXXXXXXXXXXX----KAEEQPELEWVVIPGGRVSPPEFDEDGNEKNVTPPGTMGGAAWASGGATAGXXXXXXVGFGGGDGEPFSREGEVTTAAASRRDGDGGTTSPASARAGVSRAGAVNVLSPLAA 883
            ARDVLRWMKLEGFQASEEAYMLAIEACCNPTVPQ S AAPQQQS FTTPPATSRQRLPL PPAV++GA SPEDLAGVRRKLFSEGEAPESEQHS  XXXXXXXXXXXXXX  D   GDNGVAAVLR ATA TSVPGVGDPASSVDEDVERGRVAEKVPAA XXXXXXXXXX                 KAEE+P LEWVVIPGGR SPPEFDEDGNEKNV PPGTMGGAAW +GGATAGXXXX  VGFGGGD  PFSREGEVTTAA SRRDGDGGTTSPASAR  VSRAGAVNVLSPLAA
Sbjct:  963 ARDVLRWMKLEGFQASEEAYMLAIEACCNPTVPQDSLAAPQQQSPFTTPPATSRQRLPLRPPAVANGAMSPEDLAGVRRKLFSEGEAPESEQHSAAXXXXXXXXXXXXXXRDDGDXGDNGVAAVLRLATADTSVPGVGDPASSVDEDVERGRVAEKVPAAAXXXXXXXXXXSLNPQRPQPPLGEEEERKAEERPGLEWVVIPGGRASPPEFDEDGNEKNVAPPGTMGGAAWTTGGATAGXXXXGAVGFGGGDVAPFSREGEVTTAATSRRDGDGGTTSPASARGDVSRAGAVNVLSPLAA 1262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7366.18538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX74_ECTSI5.230e-12389.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LGC4_9PHAE5.560e-11784.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7366contigEcto-sp13_S_contig7366:2..2204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score395.6
Seed ortholog evalue2.2e-107
Seed eggNOG ortholog2880.D7FX74
Model size2203
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size963
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.983801-UTR-Ecto-sp13_S_contig7366:1..231681464004.983801-UTR-Ecto-sp13_S_contig7366:1..23Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7366 2..23 +
1681464005.016996-UTR-Ecto-sp13_S_contig7366:986..22041681464005.016996-UTR-Ecto-sp13_S_contig7366:986..2204Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7366 987..2204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464005.004374-CDS-Ecto-sp13_S_contig7366:23..9861681464005.004374-CDS-Ecto-sp13_S_contig7366:23..986Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7366 24..986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7366.18538.1prot_Ecto-sp13_S_contig7366.18538.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7366 24..986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7366.18538.1

>prot_Ecto-sp13_S_contig7366.18538.1 ID=prot_Ecto-sp13_S_contig7366.18538.1|Name=mRNA_Ecto-sp13_S_contig7366.18538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=321bp
MKLEGFQASEEAYMLAIEACCNPTVPQGSPAAPQQQSSFTTPPATSRQRL
PLPPPAVSSGATSPEDLAGVRRKLFSEGEAPESEQHSAAAATSEVVTINP
PPPPRDDGDNGVAAVLRPATAGTSVPGVGDPASSVDEDVERGRVAEKVPA
AAAAAAAESLNQQRPQPPLGEEEERKAEEQPELEWVVIPGGRVSPPEFDE
DGNEKNVTPPGTMGGAAWASGGATAGAGGSGAVGFGGGDGEPFSREGEVT
TAAASRRDGDGGTTSPASARAGVSRAGAVNVLSPLAAAAPAAPAARRNPR
RPGGVQVAVKDERLPWTLTQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig7366:2..2204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7366.18538.1 ID=mRNA_Ecto-sp13_S_contig7366.18538.1|Name=mRNA_Ecto-sp13_S_contig7366.18538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7366:2..2204+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCCGAGACGTGCTCAGGTGGATGAAGCTGGAGGGTTTCCAGGCCAGCG
AAGAGGCGTACATGCTCGCCATAGAGGCGTGCTGCAACCCCACCGTTCCT
CAGGGCTCCCCCGCCGCCCCACAGCAGCAGTCGTCCTTCACCACACCGCC
GGCGACATCGCGGCAGCGGCTGCCGTTGCCTCCTCCCGCGGTTTCGAGCG
GGGCCACGTCTCCAGAAGACCTCGCGGGCGTCAGGCGAAAGCTGTTCTCG
GAGGGGGAAGCGCCGGAGAGCGAACAACATTCCGCCGCCGCTGCTACGAG
TGAAGTCGTCACGATAAATCCTCCTCCTCCTCCCCGTGATGATGGTGATA
ACGGCGTCGCCGCGGTGTTGCGGCCAGCCACCGCCGGCACCTCCGTCCCG
GGCGTCGGGGACCCCGCCTCGTCGGTAGACGAGGACGTCGAGCGGGGACG
GGTTGCCGAGAAGGTGCCGGCTGCGGCGGCGGCGGCGGCGGCAGAGAGCT
TGAACCAGCAGCGACCACAGCCGCCGCTGGGCGAGGAGGAGGAGAGGAAG
GCGGAGGAACAGCCGGAGTTGGAGTGGGTCGTCATCCCGGGGGGAAGGGT
AAGCCCACCCGAGTTCGACGAAGACGGCAACGAGAAGAATGTCACCCCCC
CGGGAACCATGGGCGGCGCCGCTTGGGCCTCAGGCGGAGCTACGGCGGGC
GCCGGGGGCAGTGGCGCGGTGGGCTTCGGCGGCGGTGACGGTGAACCGTT
CTCGCGGGAGGGCGAGGTGACGACGGCGGCGGCTTCTCGGCGGGATGGCG
ACGGCGGTACTACGTCGCCGGCGTCCGCTAGAGCGGGTGTTTCCCGCGCT
GGAGCGGTAAATGTGTTGTCGCCGCTGGCGGCGGCGGCACCGGCGGCACC
GGCGGCACGGCGGAACCCGCGGCGGCCGGGGGGGGTACAAGTAGCGGTCA
AGGACGAACGCCTCCCGTGGACCCTGACGCAGTAGTTTCCGCTGGGAGCA
GCAGTACCCCCACCGCTGCAACAGCAGACGAAGGCGGCAGCTCTTCCGTG
CCAGGCAGCGGGGCATCAAGCACCGATAGCAGGAGGTCCGTGAATAACAA
CAACAACAACGGCGGTGCGGGGGGGGGGGGGCGGACTGGGAGCGGGCCAG
GGCCATACTAGACGACATGACGGCCGCGGACCACCTACCCCCGCCCCCGG
AGGAAGCGTTTCGGGCCGTCCTCGGCGCCTGCGACTCCGCGGGGAGGGTC
GGAGAGGCCCTGGAGATCGCCCAGGTGATGGCCGGCGCCGGGTTCAGCCC
CAGCATTACCCTCATGACCCGGCTGATGGCGAGCCACGCCGACGAGTTGG
ATCGAGAGCGGAGGGAGATGGAGGAGGCGGCCGCTGAGCCCGCGGAAGAA
TGGGGCGAGACTTCGTAGACGTGTTTCGTACGGCCGGAGGCTAGGGGGGG
GGTGTGTGCGAGGAGGCGAAGAATTGGACTGGAAAGATGACCGTACCTTG
CTTTTTTTTCGGAACACGCGTTGATGTACGACGTAAGGTAGTAGTTGTTC
GGATCATGTCACGACGATTGTTATTACACACCGGAAATTTTTCTGCAACA
GAAAGATGTGTCCCGCCCGCCTTGCTTGCCGCGCAAACCTGTCCTATCCC
TTTGACCTACCTTTGGTGTGTGCATCGCGTGACAGCACGCTGCGCTTAGG
GACTGCTGTAGGCTTCCATTGGGGATGGTCCTACATGGGAAATATCGGCA
GAGGCCATCTAACCCGGCTTCTCCGTCAATTCAGCCCTTGGGTCGCGCTC
AAATTCCTTACGAGAGAGGTGTAACGGGGGCAACGAAGCCTTTACCTTAC
TGCTTCTCAGGGGAAAGGACGAGAAGGGACCGCATGCATGCGGAGTTGGC
ATGACACCTAGTAAACGTGTAAACGCATCCTTCGATCGGCCGGCCGGTGT
GATGCCCCTTCGGGATCGGCGAAAGAAAGCCTCGTTCACGCGCAGTACTG
CTGGAGTCAGACCAAAGCAAGGCCGTAGTACTGGCGAATGGTCGACACAA
CGGGCGGGACACGGGACCACGTATGTTGGGCAGATTCCTCCTCAAGTCGA
GAACACGCAGCTTTTGCTATAATCACAGCTGCGGTGAGCTAATAAACAGG
CCAGGCTCCTGCAGCAGCCTCATCTTGTGAGCGTAATAGTGTGTTTGCGT
GAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7366:2..2204+

>mRNA_Ecto-sp13_S_contig7366.18538.1 ID=mRNA_Ecto-sp13_S_contig7366.18538.1|Name=mRNA_Ecto-sp13_S_contig7366.18538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7366:2..2204+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCTGGAGGGTTTCCAGGCCAGCGAAGAGGCGTACATGCTCGCCAT
AGAGGCGTGCTGCAACCCCACCGTTCCTCAGGGCTCCCCCGCCGCCCCAC
AGCAGCAGTCGTCCTTCACCACACCGCCGGCGACATCGCGGCAGCGGCTG
CCGTTGCCTCCTCCCGCGGTTTCGAGCGGGGCCACGTCTCCAGAAGACCT
CGCGGGCGTCAGGCGAAAGCTGTTCTCGGAGGGGGAAGCGCCGGAGAGCG
AACAACATTCCGCCGCCGCTGCTACGAGTGAAGTCGTCACGATAAATCCT
CCTCCTCCTCCCCGTGATGATGGTGATAACGGCGTCGCCGCGGTGTTGCG
GCCAGCCACCGCCGGCACCTCCGTCCCGGGCGTCGGGGACCCCGCCTCGT
CGGTAGACGAGGACGTCGAGCGGGGACGGGTTGCCGAGAAGGTGCCGGCT
GCGGCGGCGGCGGCGGCGGCAGAGAGCTTGAACCAGCAGCGACCACAGCC
GCCGCTGGGCGAGGAGGAGGAGAGGAAGGCGGAGGAACAGCCGGAGTTGG
AGTGGGTCGTCATCCCGGGGGGAAGGGTAAGCCCACCCGAGTTCGACGAA
GACGGCAACGAGAAGAATGTCACCCCCCCGGGAACCATGGGCGGCGCCGC
TTGGGCCTCAGGCGGAGCTACGGCGGGCGCCGGGGGCAGTGGCGCGGTGG
GCTTCGGCGGCGGTGACGGTGAACCGTTCTCGCGGGAGGGCGAGGTGACG
ACGGCGGCGGCTTCTCGGCGGGATGGCGACGGCGGTACTACGTCGCCGGC
GTCCGCTAGAGCGGGTGTTTCCCGCGCTGGAGCGGTAAATGTGTTGTCGC
CGCTGGCGGCGGCGGCACCGGCGGCACCGGCGGCACGGCGGAACCCGCGG
CGGCCGGGGGGGGTACAAGTAGCGGTCAAGGACGAACGCCTCCCGTGGAC
CCTGACGCAGTAG
back to top