mRNA_Ecto-sp13_S_contig73655.18537.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73655.18537.1
Unique NamemRNA_Ecto-sp13_S_contig73655.18537.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig73655.18537.1 vs. uniprot
Match: D7FZA0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA0_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 7.180e-13
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 3 
Query:   30 DHTKGAIAGAAVAAYTALVAGAVRCVCRC*PRGCRSMPFSWGKRHSARARATTARW 197
            +  KGA+AGAA+AAYTALV  AVRC+ RC PRGC S PF WG   S  A  TTARW
Sbjct:   38 ETVKGAVAGAAMAAYTALVTDAVRCIHRCRPRGCWSTPFRWGTIDSPSAGGTTARW 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73655.18537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZA0_ECTSI7.180e-1364.29Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73655contigEcto-sp13_S_contig73655:237..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size216
Hectar predicted targeting categoryother localisation
Exons1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.866516-CDS-Ecto-sp13_S_contig73655:236..4521681464004.866516-CDS-Ecto-sp13_S_contig73655:236..452Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73655 237..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73655.18537.1prot_Ecto-sp13_S_contig73655.18537.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73655 237..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73655.18537.1

>prot_Ecto-sp13_S_contig73655.18537.1 ID=prot_Ecto-sp13_S_contig73655.18537.1|Name=mRNA_Ecto-sp13_S_contig73655.18537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
LFCFCSISPTTTPREPSRGQRWPPTPLSSRAPFDVCAVADLEDAGACRSA
GARDIPRVRGRRRQGGRGRRRP
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mRNA from alignment at Ecto-sp13_S_contig73655:237..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73655.18537.1 ID=mRNA_Ecto-sp13_S_contig73655.18537.1|Name=mRNA_Ecto-sp13_S_contig73655.18537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73655:237..452+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTTCTGCTTTTGCAGCATTTCTCCCACGACCACACCAAGGGAGCCATC
GCGGGGGCAGCGGTGGCCGCCTACACCGCTCTCGTCGCGGGCGCCGTTCG
ATGTGTGTGCCGTTGCTGACCTCGAGGATGCCGGAGCATGCCGTTCAGCT
GGGGCAAGAGACATTCCGCGCGTGCGCGGGCGACGACGGCAAGGTGGACG
AGGCCGACGCCGACCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73655:237..452+

>mRNA_Ecto-sp13_S_contig73655.18537.1 ID=mRNA_Ecto-sp13_S_contig73655.18537.1|Name=mRNA_Ecto-sp13_S_contig73655.18537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73655:237..452+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTTCTGCTTTTGCAGCATTTCTCCCACGACCACACCAAGGGAGCCATC
GCGGGGGCAGCGGTGGCCGCCTACACCGCTCTCGTCGCGGGCGCCGTTCG
ATGTGTGTGCCGTTGCTGACCTCGAGGATGCCGGAGCATGCCGTTCAGCT
GGGGCAAGAGACATTCCGCGCGTGCGCGGGCGACGACGGCAAGGTGGACG
AGGCCGACGCCGACCA
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