mRNA_Ecto-sp13_S_contig7361.18534.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7361.18534.1
Unique NamemRNA_Ecto-sp13_S_contig7361.18534.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7361.18534.1 vs. uniprot
Match: A0A6H5KRV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV0_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.990e-15
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:  304 DVIHKGCGHPGCIKRPSFGNDGSKKAEFCSQHSQQGMVN 420
            DVIHKGCGHPGCIKRPSFGNDGS KAEFCSQH+ +GMVN
Sbjct:   31 DVIHKGCGHPGCIKRPSFGNDGSTKAEFCSQHAWKGMVN 69
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BLAST of mRNA_Ecto-sp13_S_contig7361.18534.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.080e-13
Identity = 44/78 (56.41%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:  217 KRQRYATEPGTGKDCGGVGAAAARKTRMQ---DVI--HKGCGHP-----GCIKRPSFGNDGSKKAEFCSQHSQQGMVN 420
            KRQR  + PGT   CG  GAAAA KT  +    VI  H+G G P     GC  RPS+G D SKKAEFCSQH++QGMVN
Sbjct:  203 KRQRKGSAPGTKAQCGSGGAAAAHKTATKLSTPVIARHRGRGQPSCEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVN 280
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BLAST of mRNA_Ecto-sp13_S_contig7361.18534.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 3.480e-13
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  298 MQDVIHKGCGHPGCIKRPSFGNDGSKKAEFCSQHSQQGMV 417
            M DV+ K CGHPGC KRPS+GNDGSKKAE C+QH+ QGMV
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
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BLAST of mRNA_Ecto-sp13_S_contig7361.18534.1 vs. uniprot
Match: D7FTH3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH3_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.650e-11
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:  298 MQDVIHKGCGHPGCIKRPSFGNDGSKKAEFCSQHSQQGMVN 420
            M D++ K CGHPGC+K PS G DGSK+ E C+QHSQ+GMVN
Sbjct:    1 MIDLVSKRCGHPGCMKHPSHGKDGSKRPEICAQHSQEGMVN 41
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BLAST of mRNA_Ecto-sp13_S_contig7361.18534.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 3.580e-11
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  298 MQDVIHKGCGHPGCIKRPSFGNDGSKKAEFCSQHSQQGM 414
            M DV+++ C HPGC KRPSFG DGSKK EFC+QH+ QGM
Sbjct:    1 MVDVVNRRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
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BLAST of mRNA_Ecto-sp13_S_contig7361.18534.1 vs. uniprot
Match: D7G985_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G985_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.970e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:  298 MQDVIHKGCGHPGCIKRPSFGNDGSKKAEFCSQHSQQGMVN 420
            M DV+ K CGH GC+KRPS+G DGSKK EFC+QHSQQGMV+
Sbjct:    1 MIDVVCKRCGHLGCMKRPSYGTDGSKKREFCAQHSQQGMVS 41
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BLAST of mRNA_Ecto-sp13_S_contig7361.18534.1 vs. uniprot
Match: A0A6H5J8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.730e-10
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:  298 MQDVIHKGCGHPGCIKRPSFGNDGSKKAEFCSQHSQQGMV 417
            M +V  K   HPGCIK PSFGNDGSKKAEFCSQH+QQGMV
Sbjct:  348 MTNVAKKRSSHPGCIKIPSFGNDGSKKAEFCSQHAQQGMV 387
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BLAST of mRNA_Ecto-sp13_S_contig7361.18534.1 vs. uniprot
Match: D7FLV4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV4_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.660e-7
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:  301 QDVIH--KGCGHPGCIKRPSFGNDGSKKAEFCSQHSQQGMVN 420
            Q V H  + CGHP C+KRPSFG  GSK+ EFCS+H +QGMV+
Sbjct:  134 QGVAHISQTCGHPACMKRPSFGKAGSKEVEFCSRHQKQGMVD 175
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BLAST of mRNA_Ecto-sp13_S_contig7361.18534.1 vs. uniprot
Match: D7G984_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G984_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 9.100e-7
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:  298 MQDVIHKGCGHPGCIKRPSFGNDGSKKAEFCSQHSQQGMVN 420
            M D+ +K C HP C K PS+G   + KAE+CS+H  QGMVN
Sbjct:    1 MVDIRNKRCRHPDCTKYPSYGQGSTNKAEYCSKHRHQGMVN 41
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BLAST of mRNA_Ecto-sp13_S_contig7361.18534.1 vs. uniprot
Match: D7G6R2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R2_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 6.500e-6
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:  298 MQDVIHKGCGHPGCIKRPSFGNDGSKKAEFCSQHSQQGM 414
            M +V+ K C HP C+K PS+G DGSKKAEFC++H++  M
Sbjct:    1 MVNVVDKKCCHPECLKYPSYGTDGSKKAEFCAKHAKPAM 39
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7361.18534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KRV0_9PHAE3.990e-1589.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLW1_ECTSI2.080e-1356.41EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FUJ6_ECTSI3.480e-1375.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FTH3_ECTSI1.650e-1165.85EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LMB1_ECTSI3.580e-1169.23EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G985_ECTSI3.970e-1173.17EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5J8R1_9PHAE1.730e-1077.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLV4_ECTSI3.660e-761.90EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G984_ECTSI9.100e-753.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6R2_ECTSI6.500e-656.41EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7361contigEcto-sp13_S_contig7361:5475..6448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score70.9
Seed ortholog evalue5.4e-10
Seed eggNOG ortholog2880.D7FLV4
Model size596
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs29ZCP@1,2RXW0@2759
Cds size411
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.7146244-UTR-Ecto-sp13_S_contig7361:5474..56571681464004.7146244-UTR-Ecto-sp13_S_contig7361:5474..5657Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7361 5475..5657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.724893-CDS-Ecto-sp13_S_contig7361:5657..57681681464004.724893-CDS-Ecto-sp13_S_contig7361:5657..5768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7361 5658..5768 +
1681464004.7344012-CDS-Ecto-sp13_S_contig7361:6148..64481681464004.7344012-CDS-Ecto-sp13_S_contig7361:6148..6448Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7361 6149..6448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7361.18534.1prot_Ecto-sp13_S_contig7361.18534.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7361 5658..6448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7361.18534.1

>prot_Ecto-sp13_S_contig7361.18534.1 ID=prot_Ecto-sp13_S_contig7361.18534.1|Name=mRNA_Ecto-sp13_S_contig7361.18534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MVIVSSTNEPYKRQRYATEPGTGKDCGGVGAAAARKTRMQDVIHKGCGHP
GCIKRPSFGNDGSKKAEFCSQHSQQGMVNVVSKRCGHPGCTKHPTYGQAG
SKKAEFCSQHAWTGMANVVSKRCGHPGCMKYPTFGQA
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mRNA from alignment at Ecto-sp13_S_contig7361:5475..6448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7361.18534.1 ID=mRNA_Ecto-sp13_S_contig7361.18534.1|Name=mRNA_Ecto-sp13_S_contig7361.18534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=974bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7361:5475..6448+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGCTTCGGTTGCGTCCATAACGTCGCAAACGGAGGTCACAGTGGTACA
CTCACGATGGTCATAGCCCATCATATCCATCCTGCTGCACCTTTTCGAGT
GAAGCGAATCGCGGGGCGACTGAGTACCATCTTCGCCCCAATAGTGTTCT
GTCTCGGTACCACTGTATGACTGTTTAATCCCCATGGTGATTGTCAGCTC
CACAAACGAGCCGTACAAGCGCCAACGGTATGCCACTGAGCCGGGAACAG
GGAAAGATTGTGGGGGCGTTGGGGCGGCGGCAGCACGCAAGACGGTGAGT
TGTTTGGAAATTCGTTTTTCGTATTTCAGCATTTCCATATCAACAAACAT
GGATGGTGCACTTTGCTTGTGCAAACTGCGCTAATCTTCGTTCAGCACGC
CACTCACAGTTACCCCTTTCTCGGAAAGGTGGTTTGTGAAAATGATAGGG
TAGCGGGGTATTTAGTAGGTTCTGCAGTCTTGCTGCTGGGACAACACATC
ATTAGCAACTGTTAGCGGCCCGTCGAGACACGACGCGATCTATTCGGCCT
CCCCCGTCCACCTGTCTTTTCTCAATTCGCTGCTTCTCCTCCTCCTCCTG
CTGGAGAAATATCTGGTATCAACCATCGACTATTACCGCCCACGTATGTT
GACCTATTACCGCACGCGAAGCAGAGAATGCAGGACGTCATCCACAAGGG
GTGCGGTCATCCAGGTTGCATCAAGCGACCGTCGTTTGGCAATGACGGCA
GTAAGAAGGCAGAGTTTTGTTCTCAGCACAGCCAGCAGGGCATGGTCAAT
GTCGTCAGCAAGAGGTGCGGCCACCCCGGGTGCACGAAGCATCCCACATA
TGGTCAAGCTGGCAGTAAGAAGGCTGAGTTCTGCTCTCAGCACGCTTGGA
CGGGTATGGCCAATGTCGTCAGCAAGAGGTGCGGCCACCCCGGGTGCATG
AAGTATCCCACATTTGGTCAAGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7361:5475..6448+

>mRNA_Ecto-sp13_S_contig7361.18534.1 ID=mRNA_Ecto-sp13_S_contig7361.18534.1|Name=mRNA_Ecto-sp13_S_contig7361.18534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7361:5475..6448+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGATTGTCAGCTCCACAAACGAGCCGTACAAGCGCCAACGGTATGC
CACTGAGCCGGGAACAGGGAAAGATTGTGGGGGCGTTGGGGCGGCGGCAG
CACGCAAGACGAGAATGCAGGACGTCATCCACAAGGGGTGCGGTCATCCA
GGTTGCATCAAGCGACCGTCGTTTGGCAATGACGGCAGTAAGAAGGCAGA
GTTTTGTTCTCAGCACAGCCAGCAGGGCATGGTCAATGTCGTCAGCAAGA
GGTGCGGCCACCCCGGGTGCACGAAGCATCCCACATATGGTCAAGCTGGC
AGTAAGAAGGCTGAGTTCTGCTCTCAGCACGCTTGGACGGGTATGGCCAA
TGTCGTCAGCAAGAGGTGCGGCCACCCCGGGTGCATGAAGTATCCCACAT
TTGGTCAAGCT
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