mRNA_Ecto-sp13_S_contig736.18531.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig736.18531.1
Unique NamemRNA_Ecto-sp13_S_contig736.18531.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig736.18531.1 vs. uniprot
Match: D7FTI7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI7_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.960e-39
Identity = 75/111 (67.57%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 MARRAVSVEIFAAGDGINYPQK------------------------------------VVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            MARRAVSVEIFAAGDGINYPQK                                    VVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN
Sbjct:    1 MARRAVSVEIFAAGDGINYPQKGQTVTVHYTGYLEDGTQFDSSRNRGKPFKFKLGSEQVVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 111          
BLAST of mRNA_Ecto-sp13_S_contig736.18531.1 vs. uniprot
Match: A0A7S2C1G0_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1G0_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.360e-28
Identity = 61/111 (54.95%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 MARRAVSVEIFAAGDGINYPQK------------------------------------VVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            M R  V+VEIFAAGDGINYP+K                                    V+ GLD GVSQLSIGERAK++IPAA AYG RGFPGLVPP S LVFDLELITFN
Sbjct:    1 MPRHDVAVEIFAAGDGINYPRKGQTVTVHYTGYLPDGDTFDSSRDRGKPFKFKLGAEQVILGLDQGVSQLSIGERAKISIPAALAYGERGFPGLVPPDSELVFDLELITFN 111          
BLAST of mRNA_Ecto-sp13_S_contig736.18531.1 vs. uniprot
Match: A0A6U1QP22_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QP22_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.950e-26
Identity = 56/106 (52.83%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPQ------------------------------------KVVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            V VEIFAAGDGINYPQ                                    +V+ GLD+GVSQLSIGERAK+TIP+   YG RGFPGLVPP+S LVFDLELITF 
Sbjct:    8 VKVEIFAAGDGINYPQPGKTVTVHYTGFLPDGTQFDSSRDRGKPFKFKLGAEQVISGLDEGVSQLSIGERAKITIPSQKGYGERGFPGLVPPNSQLVFDLELITFT 113          
BLAST of mRNA_Ecto-sp13_S_contig736.18531.1 vs. uniprot
Match: F0YHE6_AURAN (Peptidylprolyl isomerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHE6_AURAN)

HSP 1 Score: 101 bits (252), Expect = 2.690e-26
Identity = 54/109 (49.54%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    7 RRAVSVEIFAAGDGINYPQK------------------------------------VVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            ++ ++VEIFAAGDG+NYP+K                                    V+PGLD GVSQLSIGERAK+ IP   AYG RGFPGL+P +SAL+FDLELITFN
Sbjct:    4 KKDIAVEIFAAGDGVNYPRKGQTVTVHYSGYLPSGDMFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKIVIPPDMAYGDRGFPGLIPRNSALIFDLELITFN 112          
BLAST of mRNA_Ecto-sp13_S_contig736.18531.1 vs. uniprot
Match: A0A8J2T2V8_9STRA (Peptidylprolyl isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2V8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.590e-25
Identity = 53/106 (50.00%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYP------------------------------------QKVVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            ++VEIFAAGDG+NYP                                    ++V+PGLD GVSQLSIGERAK++IP+  AYG RGFPGL+P +SALVFDLELITF+
Sbjct:    8 IAVEIFAAGDGVNYPRQGQTVTVHYSGYLPNGEIFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKISIPSDMAYGERGFPGLIPRNSALVFDLELITFS 113          
BLAST of mRNA_Ecto-sp13_S_contig736.18531.1 vs. uniprot
Match: A0A836CL56_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL56_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.160e-22
Identity = 40/55 (72.73%), Postives = 51/55 (92.73%), Query Frame = 1
Query:   61 QKVVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            ++VVPGLD+G +QLSIGERAK+T+P + AYGA+GFPGLVPP+S LVFD+ELITF+
Sbjct:   54 EQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 108          
BLAST of mRNA_Ecto-sp13_S_contig736.18531.1 vs. uniprot
Match: A0A485LR83_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LR83_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.100e-22
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPQK------------------------------------VVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            V VE+F AGDG+NYP+K                                    V+PGLD+G+ QL + ERAK+ IPA  AYG +GFPGLVPP++ LVFD+ELITF 
Sbjct:   21 VQVEVFVAGDGVNYPKKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIEQLCMKERAKIYIPADKAYGKKGFPGLVPPNTNLVFDIELITFK 126          
BLAST of mRNA_Ecto-sp13_S_contig736.18531.1 vs. uniprot
Match: K3WSB6_GLOUD (Peptidylprolyl isomerase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB6_GLOUD)

HSP 1 Score: 90.1 bits (222), Expect = 1.250e-21
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPQK------------------------------------VVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            + VE+F AGDGINYP+K                                    V+PGLD+GV +L + ERAK+ IPA  AYG +GFPGLVPP+S L+FDLEL+TF 
Sbjct:   16 IQVEVFIAGDGINYPKKGQTVVVHYTGYLQDGRKFDSSRDREKPFKFKLGAEQVIPGLDEGVERLCMKERAKIFIPADKAYGRKGFPGLVPPNSNLIFDLELLTFR 121          
BLAST of mRNA_Ecto-sp13_S_contig736.18531.1 vs. uniprot
Match: A0A024TRW9_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TRW9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.030e-21
Identity = 46/106 (43.40%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPQK------------------------------------VVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            + VE+F AGDGINYPQK                                    V+PGLD+G+ +L + ERAK+ IP+  AYG +GFPGLVPP++ LVFD+ELITF 
Sbjct:   21 IQVEVFVAGDGINYPQKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIERLCMKERAKIYIPSDKAYGKKGFPGLVPPNTNLVFDIELITFK 126          
BLAST of mRNA_Ecto-sp13_S_contig736.18531.1 vs. uniprot
Match: A0A7S1CR57_9STRA (Peptidylprolyl isomerase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CR57_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.860e-21
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    1 MARRAVSVEIFAAGDGINYP-------------------------------------QKVVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            M++  V+VEIF AGDG+NYP                                     ++V+ GLD+GV+QLSIGE A++ IP+  AYGA GFPGLVPP+  L FD+ELI+F+
Sbjct:   13 MSKGRVTVEIFKAGDGVNYPKPGNVVTLHYTGYYGRAQTEFDSTRTRGKPFKFKLGAEQVIEGLDEGVAQLSIGEHAQIHIPSEKAYGAHGFPGLVPPNKDLTFDVELISFS 124          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig736.18531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTI7_ECTSI2.960e-3967.57Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S2C1G0_9STRA1.360e-2854.95Peptidylprolyl isomerase n=1 Tax=Florenciella parv... [more]
A0A6U1QP22_9STRA1.950e-2652.83Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
F0YHE6_AURAN2.690e-2649.54Peptidylprolyl isomerase n=1 Tax=Aureococcus anoph... [more]
A0A8J2T2V8_9STRA1.590e-2550.00Peptidylprolyl isomerase n=1 Tax=Pelagomonas calce... [more]
A0A836CL56_9STRA2.160e-2272.73Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A485LR83_9STRA7.100e-2244.34Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
K3WSB6_GLOUD1.250e-2144.34Peptidylprolyl isomerase n=1 Tax=Globisporangium u... [more]
A0A024TRW9_9STRA2.030e-2143.40Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
A0A7S1CR57_9STRA3.860e-2141.96Peptidylprolyl isomerase n=1 Tax=Bicosoecida sp. C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig736contigEcto-sp13_S_contig736:15881..17559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score134.0
Seed ortholog evalue2.9e-29
Seed eggNOG ortholog2880.D7FTI7
Model size228
KEGG koko:K09568,ko:K15382
KEGG TC9.A.58.1
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGsCOG0545@1,KOG0544@2759
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-21_001540.1
EC5.2.1.8
Cds size228
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.5238655-CDS-Ecto-sp13_S_contig736:15880..159461681464004.5238655-CDS-Ecto-sp13_S_contig736:15880..15946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig736 15881..15946 +
1681464004.534718-CDS-Ecto-sp13_S_contig736:17024..170811681464004.534718-CDS-Ecto-sp13_S_contig736:17024..17081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig736 17025..17081 +
1681464004.5435324-CDS-Ecto-sp13_S_contig736:17454..175591681464004.5435324-CDS-Ecto-sp13_S_contig736:17454..17559Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig736 17455..17559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig736.18531.1prot_Ecto-sp13_S_contig736.18531.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig736 15881..17559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig736.18531.1

>prot_Ecto-sp13_S_contig736.18531.1 ID=prot_Ecto-sp13_S_contig736.18531.1|Name=mRNA_Ecto-sp13_S_contig736.18531.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MARRAVSVEIFAAGDGINYPQKVVPGLDDGVSQLSIGERAKVTIPAASAY
GARGFPGLVPPHSALVFDLELITFN*
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mRNA from alignment at Ecto-sp13_S_contig736:15881..17559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig736.18531.1 ID=mRNA_Ecto-sp13_S_contig736.18531.1|Name=mRNA_Ecto-sp13_S_contig736.18531.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1679bp|location=Sequence derived from alignment at Ecto-sp13_S_contig736:15881..17559+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGGCGGGCGGTTTCCGTCGAGATTTTTGCGGCAGGAGATGGCAT TAACTACCCTCAGAAGGTCGGTGAGCTTAGCCAAACATTCTGCAGGTTTG CGGTTGTCGCTGGTGCTCTGCCCACCGCATCGCGCCTGGTGTACTTGCGC ATGGTGCCTCTGCTTGATGTATCCTACGACAGCATGTTCTTACCAGACCC AATAACAACGTGGTGAGACATAACATGCACTGGTGACCACATCATCATCC GCCTTGCAATTTCCGGTACTCTATTTAGCCCAAAGAGTAGGGTTGTCGAA GAACAATCAATGTTTGTACAACATGCAGACGAAAGGTCTTCCGCTAGCCT GGCACCTTCAAAATGTGCACCACCCGCTTGTTTCTCGAACACGAGCTGTT GTGTGCCGGTATCAGAGCGGATTGACCTTCGCCTGAAGGTCGAAGCCCGC CTACGTACATCTGTCGTGCCTGCTATACCATTTATCGCGTACTACGGAAT CTACCGCCGTTCAACTCATTAACGGACCTACATAGGGGCAGACGGTGACC GTTCATTACACCGGATATTTGGAGGATGGGACACAATTCGACTCGTCTCG AAATCGAGGCAAACCTTTCAAGTTTAAGTTGGGCAGCGAGCAGGTAAGAC CAACGGGGCACGTGCGGGTGCAGTACCACGAACAGAACACCCTGGGATGA GTGCGTTTGCGGCTGAGGAACGGGTGTCGAATTGACGATGTTGAAACCTT CCGGACAGCACCATCTTGTTGCAGAATAAGCTTATTGCCAGTGCACGTCG TACATACATGTGGGCTGTTATTTGGCACCTACGCATGCATACCATGGCAC CAATGGTTGGTGGATGTCCACGCCTCGATTATGTCTCCCGCAGCTAATAT GTCAATCATCATTGAATGGTATTCGTAAGGACAATACGGGGACCTCAGTA TCACACGTTCGCGAGCGGCGTTTGAGCTTCCTTTCACTAGTCGCGACTAT TGAAATATTCCGAGAAAACTGCGGACTAACCCGGACGAAAGTGCACAGGC GGAAGTGTAGCTGTTGAGCTGTCAAGACCCACAACGCATGCCCAAGCCGC GATGCGTTACTTATGTCTTGTCATGCCTATTCGGGCTGCTGCAGGTAGTC CCGGGACTAGACGATGGCGTGAGCCAGCTCAGCATTGGAGAACGAGCAAA GGTAAACATGACAAAGGTAAAACCACATTTTAGTTTGTTTGTCTGGTGCA GTTGGACCGCAATATGGGGAGGGATAAATCTTCGGAATATGTCATTAAAA TCTGTTGTGGGTGGGTGAGATTTCAACTTGGAAGGTTTCCCACGCGTACG TGTATCTCGATTGACTTTGAAGATTTTTGCTTCGACTGTTGGTCTGAAAA CCCCTGCCCTTTCTTTTCCCCACGAATCCCTCCACAGCCTCAATGCGTCA GCGCCGGGTGCGACGGGAATCGTCCTCCTCCACCACCTGCGCTTGTTTCT ACCTCAGGAGGAACTCTCAACACTTGTTTTGTCCATTTTTTTCGCCCCTC GCTTGAACCGCCCGCCACTCCCAGGTCACAATTCCCGCGGCCTCAGCGTA CGGGGCACGAGGATTCCCGGGCCTTGTTCCCCCGCACTCGGCGCTCGTGT TTGACTTGGAGTTAATCACGTTCAATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig736:15881..17559+

>mRNA_Ecto-sp13_S_contig736.18531.1 ID=mRNA_Ecto-sp13_S_contig736.18531.1|Name=mRNA_Ecto-sp13_S_contig736.18531.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig736:15881..17559+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGGCGGGCGGTTTCCGTCGAGATTTTTGCGGCAGGAGATGGCAT
TAACTACCCTCAGAAGGTAGTCCCGGGACTAGACGATGGCGTGAGCCAGC
TCAGCATTGGAGAACGAGCAAAGGTCACAATTCCCGCGGCCTCAGCGTAC
GGGGCACGAGGATTCCCGGGCCTTGTTCCCCCGCACTCGGCGCTCGTGTT
TGACTTGGAGTTAATCACGTTCAATTGA
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